genome.fa.s13.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  17  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3219446--3219480	12	2.8	13	86	8	54	25	0	0	74	0.82
3219445--3219491	20	2.3	21	75	17	55	27	0	2	70	0.99
3234790--3234893	33	3.2	32	73	16	97	48	0	0	50	1.14
3235915--3235959	18	2.4	19	85	7	56	26	2	4	66	1.22
3237676--3237700	13	1.9	13	100	0	50	36	0	0	64	0.94
3243326--3243356	4	7.8	4	100	0	62	51	22	0	25	1.48
3247123--3247149	2	13.5	2	100	0	54	51	0	0	48	1.00
3247195--3247244	25	2.0	25	96	0	91	46	4	22	28	1.70
3250041--3250092	25	2.1	25	88	0	77	25	30	11	32	1.91
3255052--3255100	21	2.3	21	96	0	89	40	16	10	32	1.82
3256245--3256289	19	2.3	20	88	7	67	68	4	0	26	1.08
3256955--3256981	2	13.5	2	100	0	54	51	0	0	48	1.00
3257345--3257372	2	14.0	2	100	0	56	50	0	0	50	1.00
3257372--3257398	2	13.5	2	100	0	54	0	0	48	51	1.00
3257501--3257557	2	28.5	2	100	0	114	49	0	50	0	1.00
3258042--3258093	24	2.1	25	89	3	79	48	7	3	40	1.50
3260340--3260518	89	2.0	89	95	0	322	21	36	6	35	1.80
3263246--3263304	18	3.2	18	71	4	55	62	1	1	33	1.15
3265621--3265677	27	2.1	27	96	0	105	29	14	17	38	1.89
3275841--3275986	16	9.2	16	71	6	91	19	4	28	47	1.68
3275858--3275966	31	3.5	31	82	5	130	20	4	29	45	1.70
3275905--3275975	17	4.4	17	72	12	69	21	4	29	45	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3275895--3275986	48	1.9	47	86	2	130	22	3	28	45	1.68
3276439--3276471	11	3.1	11	91	8	59	72	0	0	27	0.85
3276439--3276471	10	3.2	10	95	4	57	72	0	0	27	0.85
3276693--3276746	28	1.9	28	88	0	81	20	24	22	33	1.97
3277429--3277466	19	2.0	20	84	5	51	5	13	0	81	0.85
3281127--3281171	22	2.1	22	84	12	58	48	8	0	42	1.34
3282679--3282707	2	14.5	2	100	0	58	48	0	0	51	1.00
3284264--3284388	64	2.0	64	88	0	187	25	18	33	22	1.96
3290025--3290212	95	2.0	94	85	3	252	38	13	9	38	1.77
3304231--3304270	18	2.2	19	86	4	55	70	20	10	0	1.16
3316162--3316222	22	2.8	21	87	9	79	52	0	0	47	1.00
3317764--3317812	25	2.0	25	84	8	64	8	8	10	73	1.25
3323784--3323811	6	4.7	6	100	0	56	14	53	0	32	1.41
3332621--3332664	14	3.1	14	76	0	52	52	0	0	47	1.00
3332633--3332731	51	1.9	51	80	8	112	52	1	1	45	1.14
3339682--3339725	22	2.0	22	91	8	72	45	13	9	31	1.75
3343157--3343238	23	3.5	23	83	8	85	43	18	23	14	1.86
3354558--3354584	2	13.5	2	100	0	54	48	0	0	51	1.00
3366680--3366712	14	2.4	14	90	10	50	57	0	0	42	0.98
3369319--3369343	2	12.5	2	100	0	50	0	0	48	52	1.00
3372667--3372691	2	12.5	2	100	0	50	52	0	0	48	1.00
3374295--3374368	23	3.0	25	72	11	62	28	8	1	62	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3375008--3375066	28	2.2	25	85	8	73	47	0	1	50	1.11
3377187--3377225	20	1.9	20	89	5	60	38	0	2	58	1.12
3377214--3377251	17	2.3	16	86	13	51	50	0	0	50	1.00
3377449--3377477	12	2.5	12	94	5	51	44	0	0	55	0.99
3379419--3379447	14	2.0	15	93	6	51	31	0	6	62	1.22
3379499--3379541	23	1.9	23	85	4	61	46	2	0	51	1.13
3388644--3388688	18	2.5	19	82	10	58	37	0	0	62	0.96
3389787--3389820	16	2.1	17	88	5	52	50	0	0	50	1.00
3393549--3393577	13	2.1	14	93	6	51	0	13	24	62	1.32
3393549--3393577	7	4.3	7	91	8	51	0	13	24	62	1.32
3393714--3393827	51	2.2	52	83	10	153	42	18	16	22	1.89
3398950--3398992	22	2.0	22	81	9	52	67	6	2	23	1.27
3399948--3399992	22	2.0	22	83	8	56	31	0	4	64	1.13
3401628--3401666	19	2.1	19	85	0	51	46	2	10	41	1.51
3401846--3401876	4	7.8	4	100	0	62	74	0	0	25	0.82
3405446--3405478	2	16.5	2	100	0	66	48	0	0	51	1.00
3415429--3415496	30	2.4	29	80	11	79	33	1	1	63	1.13
3416744--3416876	69	1.9	70	92	1	223	23	9	19	48	1.77
3417003--3417065	19	2.9	23	75	20	71	31	11	14	42	1.80
3425258--3425304	21	2.2	22	96	3	87	48	0	31	19	1.49
3427685--3427732	25	2.0	24	87	4	69	50	2	0	47	1.12
3433039--3433093	21	2.4	23	79	17	69	54	1	0	43	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3433128--3433184	22	2.6	22	72	22	57	33	14	17	35	1.90
3434327--3434381	26	2.2	25	90	3	83	47	0	1	50	1.11
3434476--3434734	23	11.0	23	68	23	148	42	1	1	54	1.19
3434475--3434605	66	1.9	68	83	7	169	43	1	0	54	1.15
3434476--3434844	18	20.0	18	68	21	162	41	2	1	54	1.22
3434476--3434874	13	30.6	13	68	21	196	41	2	1	54	1.23
3434487--3434726	25	9.0	27	67	21	123	42	1	1	54	1.18
3434734--3434799	22	3.0	22	86	2	78	37	6	0	56	1.24
3434592--3434838	41	6.0	40	71	15	141	39	2	1	56	1.24
3434632--3434805	70	2.4	69	80	12	179	40	3	1	54	1.27
3434709--3434844	59	2.4	56	84	7	168	39	3	1	55	1.27
3438427--3438464	17	2.2	18	86	9	53	34	0	0	65	0.93
3438425--3438466	22	1.9	22	85	0	57	35	0	0	64	0.94
3440548--3440633	31	2.8	31	87	3	111	48	0	6	44	1.29
3440583--3440616	17	1.9	18	88	5	52	50	0	8	41	1.34
3449044--3449069	2	13.0	2	100	0	52	50	0	0	50	1.00
3449620--3449651	16	2.0	16	100	0	64	62	18	6	12	1.50
3451305--3451335	16	1.9	16	93	0	53	61	16	3	19	1.48
3453559--3453589	10	3.1	10	90	0	53	25	29	0	45	1.54
3467813--3467875	17	3.6	17	74	16	56	28	19	15	36	1.92
3468494--3468542	19	2.7	18	93	6	82	26	0	4	69	1.06
3469550--3469587	20	1.9	19	85	15	51	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3474019--3474049	14	2.2	14	94	0	53	45	3	3	48	1.34
3474398--3474432	13	2.5	14	90	9	54	51	0	0	48	1.00
3474897--3474977	31	2.6	31	88	3	110	38	6	6	49	1.53
3475106--3475169	14	4.2	15	76	15	60	43	3	0	53	1.16
3476007--3476053	20	2.3	20	81	0	58	57	4	0	38	1.18
3476458--3476510	21	2.6	21	77	16	58	47	3	0	49	1.19
3478003--3478027	12	2.1	12	100	0	50	44	16	32	8	1.76
3484556--3484582	14	1.9	14	100	0	54	51	0	0	48	1.00
3484901--3484937	15	2.5	15	86	0	56	43	0	0	56	0.99
3484899--3484945	18	2.5	20	79	10	62	48	0	0	51	1.00
3484941--3484973	17	1.9	17	93	0	57	48	3	3	45	1.33
3485431--3485483	24	2.1	25	82	6	63	56	1	0	41	1.10
3489832--3489884	21	2.8	17	78	21	52	39	5	0	54	1.24
3489899--3490024	47	2.7	47	93	0	216	34	23	4	38	1.76
3491868--3491921	21	2.6	20	77	8	54	14	9	3	72	1.24
3495080--3495113	17	2.0	17	100	0	68	23	11	11	52	1.70
3495427--3495568	8	19.3	7	72	23	66	25	0	4	69	1.08
3495422--3495568	25	5.5	27	69	24	73	25	0	4	70	1.07
3495473--3495568	32	3.1	30	78	17	92	23	0	5	70	1.07
3495491--3495568	4	19.2	4	75	20	58	24	0	5	70	1.07
3495428--3495609	85	2.0	86	79	13	190	29	0	4	66	1.11
3495576--3495628	18	3.0	18	86	5	81	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3495576--3495628	8	5.8	9	78	17	56	49	0	0	50	1.00
3495949--3496134	21	8.9	21	68	4	106	31	21	7	39	1.81
3495911--3496116	63	3.3	63	90	0	313	33	19	8	38	1.83
3496012--3496179	84	2.0	84	89	0	255	32	20	8	38	1.82
3496033--3496210	42	4.2	42	75	2	160	32	19	8	39	1.82
3496031--3496209	84	2.1	84	83	2	216	33	19	8	38	1.82
3497053--3497089	2	19.0	2	94	5	67	48	0	0	51	1.00
3498189--3498244	22	2.5	23	88	8	89	48	0	0	51	1.00
3502255--3502282	3	9.3	3	100	0	56	35	0	0	64	0.94
3503588--3503625	16	2.2	18	90	9	62	28	5	0	65	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129