genome.fa.s13.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  127  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23180326--23180398	22	3.3	21	80	3	65	53	5	9	31	1.56
23180357--23180413	22	2.6	22	91	0	87	45	1	10	42	1.49
23180468--23180598	22	6.0	22	77	0	118	45	7	6	39	1.59
23180462--23180589	44	2.9	43	82	4	148	45	7	7	39	1.60
23180469--23180639	44	3.9	43	80	3	144	46	6	8	38	1.61
23180629--23180654	11	2.4	11	100	0	52	61	0	0	38	0.96
23180956--23181015	22	2.8	21	77	5	57	46	10	5	38	1.59
23180985--23181087	48	2.1	47	81	13	113	49	9	2	37	1.51
23181005--23181056	27	1.9	27	92	0	86	53	9	3	32	1.51
23181521--23181556	10	3.8	9	86	13	54	63	0	0	36	0.94
23181538--23181585	25	1.9	25	86	0	69	64	8	2	25	1.32
23187580--23187660	33	2.5	33	76	9	85	44	0	7	48	1.31
23195800--23195835	2	18.0	2	94	0	63	47	0	2	50	1.15
23212707--23213000	145	2.0	145	96	0	543	46	17	12	23	1.82
23214585--23214767	91	2.0	91	94	0	321	38	13	15	32	1.87
23217014--23217052	10	3.9	10	86	10	53	87	0	12	0	0.55
23221209--23221284	18	4.4	17	71	14	50	43	2	1	52	1.23
23222103--23222127	13	1.9	13	100	0	50	48	0	0	52	1.00
23224029--23224065	17	2.1	18	90	5	58	43	0	0	56	0.99
23229327--23229522	99	2.0	99	89	2	304	34	21	18	25	1.96
23233342--23233459	64	1.9	61	84	8	157	46	0	0	52	1.06
23244675--23244714	3	13.3	3	94	0	62	27	0	5	67	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23250213--23250255	20	2.1	20	87	12	61	32	4	2	60	1.30
23255859--23255905	20	2.4	19	85	3	67	74	2	17	6	1.12
23255859--23255913	23	2.6	21	83	13	60	74	1	16	7	1.12
23258047--23258076	3	10.3	3	92	7	53	30	0	0	70	0.88
23259888--23260068	95	1.9	95	89	2	283	25	14	18	41	1.89
23297599--23297652	2	27.0	2	84	0	72	50	42	5	1	1.36
23298025--23298065	3	13.7	3	94	0	73	68	2	0	29	1.03
23298068--23298098	3	10.3	3	100	0	62	67	0	32	0	0.91
23310831--23310864	17	2.1	16	88	5	50	58	14	5	20	1.57
23317137--23317247	55	2.0	55	92	0	186	38	18	21	21	1.93
23323685--23323779	39	2.4	39	80	3	111	23	14	35	26	1.93
23323755--23323932	39	4.6	39	89	0	257	30	14	34	20	1.92
23323665--23323926	78	3.4	78	82	1	274	27	14	34	22	1.94
23340823--23340848	8	3.2	8	100	0	52	38	23	11	26	1.89
23341057--23341107	25	2.0	25	92	0	84	35	15	19	29	1.93
23343003--23343419	62	6.9	59	75	5	241	51	5	8	34	1.55
23343015--23343272	62	4.2	62	80	6	256	51	4	6	36	1.48
23343059--23343096	16	2.5	15	87	8	51	52	0	0	47	1.00
23343018--23343269	122	2.0	125	82	6	307	52	4	7	35	1.49
23347314--23347385	17	4.5	15	80	16	74	80	0	18	1	0.78
23347314--23347431	33	3.3	33	82	12	105	78	0	15	5	0.93
23347314--23347419	16	6.4	15	81	15	97	79	0	16	4	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23347329--23347431	16	6.3	15	80	11	80	79	0	14	5	0.91
23347362--23347440	40	2.0	40	87	7	115	77	0	13	8	0.99
23348529--23348570	16	2.6	17	85	14	63	28	0	4	66	1.12
23348530--23348570	19	2.2	19	86	8	57	29	0	4	65	1.13
23348597--23348674	25	3.2	25	79	16	67	30	1	3	64	1.20
23349627--23349782	11	14.3	11	71	18	62	16	3	3	76	1.07
23349702--23349782	17	5.0	16	76	10	76	13	4	1	80	0.94
23349714--23349787	25	2.9	25	84	13	89	13	5	1	79	0.96
23349809--23350085	118	2.3	118	86	5	373	47	6	10	35	1.63
23349809--23350088	60	4.7	59	83	7	345	47	6	10	35	1.64
23350717--23350960	34	7.2	34	84	3	303	31	17	12	38	1.87
23350785--23350839	17	3.2	17	71	0	56	36	9	12	41	1.75
23350848--23350909	17	3.6	17	75	0	61	27	22	17	32	1.97
23350903--23350977	17	4.4	17	78	6	71	29	20	10	40	1.86
23350887--23351032	51	2.9	51	81	4	134	30	17	13	38	1.88
23350937--23351067	17	7.6	17	77	5	93	28	19	12	39	1.88
23353312--23353447	61	2.2	62	81	6	161	51	4	8	36	1.52
23353409--23353552	61	2.3	62	75	13	145	52	4	6	36	1.48
23355496--23355538	18	2.3	19	84	4	52	55	4	32	6	1.47
23357987--23358033	23	2.0	24	91	4	78	44	0	0	55	0.99
23358377--23358401	2	12.5	2	100	0	50	48	0	0	52	1.00
23359128--23359154	7	3.9	7	100	0	54	29	11	29	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23359592--23359635	2	22.5	2	90	4	72	50	2	0	47	1.13
23360548--23360580	2	16.5	2	93	0	57	51	0	0	48	1.00
23362201--23362239	21	1.9	20	89	5	60	10	7	17	64	1.48
23370074--23370098	2	12.5	2	100	0	50	48	0	0	52	1.00
23376011--23376048	17	2.2	17	90	0	58	47	0	0	52	1.00
23380236--23380279	3	14.7	3	95	0	79	31	2	0	65	1.05
23381336--23381377	21	2.0	21	85	0	57	80	7	4	7	1.00
23381732--23381781	26	2.0	26	84	7	68	62	0	0	38	0.96
23386983--23387021	19	2.1	19	95	0	69	41	5	2	51	1.38
23392309--23392337	15	1.9	15	100	0	58	20	17	27	34	1.95
23396539--23396569	2	15.5	2	93	0	53	51	3	0	45	1.17
23396635--23396665	3	10.3	3	100	0	62	32	0	0	67	0.91
23398041--23398107	33	2.0	35	88	5	102	46	7	4	41	1.52
23401414--23401479	32	2.0	33	97	2	125	24	12	15	48	1.78
23415277--23415306	2	15.5	2	93	6	53	50	0	0	50	1.00
23417834--23417858	2	12.5	2	100	0	50	0	48	0	52	1.00
23421578--23421624	3	15.7	3	95	0	67	65	6	0	27	1.16
23422752--23422852	51	2.0	51	84	3	132	36	12	9	40	1.77
23422769--23422878	51	2.1	53	80	11	129	42	10	8	38	1.70
23423457--23423502	17	2.5	19	80	16	53	19	4	2	73	1.10
23423520--23423576	3	19.7	3	89	7	91	68	0	1	29	1.00
23423529--23423641	15	8.2	13	80	10	52	71	3	1	23	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23424444--23424477	3	11.3	3	100	0	68	67	0	0	32	0.91
23424691--23425092	39	10.3	38	82	6	383	43	22	10	24	1.84
23424691--23425093	196	2.1	196	84	2	515	43	22	10	24	1.84
23425060--23425125	33	2.0	33	87	0	96	37	24	15	22	1.92
23435963--23436010	17	2.6	17	81	15	51	68	8	0	22	1.16
23435994--23436028	13	2.5	14	86	13	54	74	8	0	17	1.06
23435998--23436028	13	2.3	14	94	5	55	77	6	0	16	0.97
23436006--23436090	25	3.4	24	76	9	64	75	10	4	9	1.18
23436393--23436444	20	2.6	20	84	0	68	50	17	13	19	1.78
23439614--23439652	20	2.0	20	85	10	53	23	5	0	71	1.05
23439846--23439906	4	15.2	4	77	13	63	70	4	1	22	1.15
23440937--23440983	3	15.7	3	90	0	76	36	0	27	36	1.57
23440982--23441030	3	16.3	3	100	0	98	67	0	0	32	0.91
23441849--23442008	81	2.0	81	85	4	216	39	13	18	29	1.88
23441895--23442027	41	3.3	41	76	15	123	42	12	15	29	1.83
23441962--23442054	41	2.3	41	84	0	114	44	9	13	32	1.77
23449875--23449916	14	2.6	16	82	17	52	19	0	0	80	0.70
23449876--23449914	18	2.2	18	90	0	60	20	0	0	79	0.73
23450894--23450924	8	4.0	8	91	8	55	74	0	0	25	0.82
23461801--23461839	9	4.8	8	87	12	53	87	0	2	10	0.65
23461792--23461838	15	2.9	15	84	9	58	82	0	4	12	0.80
23461791--23461838	8	5.9	8	85	11	53	81	0	6	12	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23461792--23461840	16	3.1	16	82	8	64	83	0	4	12	0.77
23462562--23462627	33	2.0	33	81	0	78	30	16	19	33	1.94
23462842--23463029	85	2.2	84	81	10	220	27	12	13	47	1.78
23462842--23463010	43	4.0	43	84	8	213	27	13	14	45	1.81
23463744--23463776	14	2.3	15	94	5	59	24	0	0	75	0.80
23463736--23463795	21	2.8	21	75	14	61	20	0	6	73	1.05
23465420--23465449	9	3.2	9	95	4	51	63	0	0	36	0.95
23465422--23465451	10	3.1	10	95	4	53	63	0	0	36	0.95
23468185--23468228	21	2.1	21	87	8	63	18	0	9	72	1.10
23468286--23468322	3	12.7	3	83	16	51	29	0	0	70	0.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129