genome.fa.s13.2.7.7.80.10.50.1000.71.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  71  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13519490--13519959	173	2.7	173	92	1	739	34	16	5	42	1.73
13529016--13529103	22	4.0	22	95	0	149	37	13	17	31	1.88
13530405--13530474	19	3.6	20	84	5	90	21	12	22	42	1.87
13530444--13530525	19	4.4	17	73	15	56	25	18	17	39	1.92
13530532--13530588	26	2.2	26	83	0	69	21	7	17	54	1.66
13530758--13530806	3	15.7	3	87	8	71	28	2	0	69	1.00
13530996--13531035	15	2.6	16	88	4	64	65	5	2	27	1.27
13532166--13532214	23	2.1	23	85	7	64	8	16	12	63	1.51
13532282--13532312	15	2.0	16	93	6	55	12	0	3	83	0.75
13533137--13533231	35	2.9	31	83	11	127	41	11	24	23	1.87
13533143--13533214	35	2.1	35	100	0	144	43	11	23	22	1.85
13533080--13533251	31	5.4	31	79	6	128	40	9	25	24	1.85
13533346--13533587	32	7.5	33	78	6	181	30	13	17	38	1.88
13533379--13533558	65	2.8	65	84	2	202	30	13	18	37	1.90
13533368--13533615	65	3.8	65	79	4	191	31	14	16	37	1.89
13533370--13533674	97	3.1	99	79	7	297	32	13	16	37	1.88
13533412--13533652	32	7.5	31	75	5	167	29	14	17	38	1.89
13534522--13534813	146	2.0	146	90	2	462	42	16	13	27	1.85
13535045--13535204	74	2.2	74	84	5	200	26	21	19	32	1.97
13536790--13536825	16	2.2	16	90	0	54	44	11	11	33	1.75
13543385--13543450	21	3.1	21	74	10	71	7	22	0	69	1.13
13543384--13543469	22	3.9	22	76	14	88	5	24	0	69	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13543381--13543469	24	3.9	22	72	19	67	5	24	0	69	1.10
13543920--13543987	8	8.8	8	74	16	54	7	11	1	79	0.99
13543919--13543987	31	2.2	31	85	12	97	7	11	1	79	0.98
13550360--13550403	23	1.9	23	86	9	63	25	4	0	70	1.06
13555246--13555305	20	3.1	19	80	7	75	81	1	11	5	0.91
13555251--13555305	10	5.6	10	72	20	53	81	1	12	3	0.89
13556310--13556369	24	2.6	23	84	5	77	28	5	21	45	1.73
13556310--13556361	24	2.2	24	89	3	79	26	5	21	46	1.74
13557088--13557268	66	2.8	65	74	3	166	22	20	9	46	1.80
13557035--13557268	65	3.7	65	72	12	173	22	19	9	48	1.78
13559381--13559439	3	19.7	3	100	0	118	32	0	0	67	0.91
13559493--13559534	22	1.9	22	85	0	57	35	11	7	45	1.69
13563439--13563480	22	1.9	22	90	0	66	33	11	9	45	1.73
13563647--13563714	3	22.7	3	100	0	136	33	0	0	66	0.92
13563845--13563899	3	18.7	3	92	3	94	30	1	0	67	1.01
13563945--13563984	15	2.6	16	88	4	64	65	5	2	27	1.27
13563950--13564034	35	2.5	34	83	9	102	63	7	2	27	1.32
13565246--13565275	15	2.0	15	93	0	51	13	0	3	83	0.77
13565702--13565743	22	1.9	22	90	0	66	33	11	9	45	1.73
13565911--13565946	3	12.0	3	100	0	72	33	0	0	66	0.92
13566067--13566112	3	15.7	3	90	4	76	30	2	0	67	1.03
13566158--13566197	15	2.6	16	88	4	64	65	5	2	27	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13566163--13566247	35	2.5	34	83	9	102	63	7	2	27	1.32
13567914--13567955	22	1.9	22	85	0	57	33	14	9	42	1.78
13568278--13568314	3	12.7	3	94	5	67	29	0	0	70	0.88
13568360--13568399	15	2.6	16	88	4	64	65	5	2	27	1.27
13568365--13568449	35	2.5	34	83	9	102	63	7	2	27	1.32
13570753--13570818	20	3.3	19	79	14	55	77	3	18	1	0.98
13571907--13572108	39	5.2	39	78	2	172	23	11	17	48	1.79
13571907--13572108	78	2.6	78	76	3	235	23	11	17	48	1.79
13573459--13573540	29	2.9	28	74	18	71	14	2	6	76	1.07
13573471--13573529	22	2.5	24	79	20	72	13	3	5	77	1.05
13573478--13573540	22	3.2	20	85	14	87	12	3	4	79	1.01
13573486--13573540	22	2.6	22	91	8	89	12	3	5	78	1.06
13578246--13578293	25	1.9	25	100	0	96	43	8	22	25	1.81
13580983--13581025	23	1.9	22	85	4	59	44	2	2	51	1.27
13581437--13581679	124	2.0	123	83	4	310	36	11	13	38	1.81
13584542--13584588	20	2.3	20	92	0	76	51	8	6	34	1.58
13585442--13585487	20	2.3	20	84	0	56	28	13	10	47	1.76
13603043--13603174	36	3.7	36	82	4	160	31	6	18	43	1.74
13609080--13609136	25	2.3	24	85	11	80	45	3	1	49	1.29
13609114--13609154	16	2.6	16	84	0	55	53	0	4	41	1.22
13609094--13609143	25	2.0	25	88	0	73	48	4	2	46	1.32
13609134--13609189	18	3.0	19	80	15	55	53	0	1	44	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13612637--13612761	17	7.7	16	66	18	53	22	4	26	47	1.69
13612775--13612862	24	3.5	25	76	9	81	21	3	21	53	1.60
13613281--13613320	15	2.6	16	88	4	55	45	0	2	52	1.14
13616380--13616458	22	3.5	22	79	8	79	22	21	27	27	1.99
13616551--13616627	28	2.7	29	78	8	77	29	16	20	32	1.95
13625891--13625960	27	2.6	27	81	0	95	30	1	22	45	1.61
13625945--13626091	15	9.9	15	68	20	76	22	2	27	47	1.65
13625969--13626104	72	1.9	71	84	4	184	20	3	30	45	1.68
13626108--13626163	17	3.2	17	76	14	60	28	7	23	41	1.80
13626121--13626219	9	11.7	9	67	16	50	18	5	30	46	1.70
13626154--13626243	24	3.7	25	88	4	121	15	3	32	48	1.61
13633524--13633566	18	2.4	17	88	7	59	72	4	4	18	1.20
13633553--13633577	11	2.3	11	100	0	50	76	0	0	24	0.80
13634310--13634371	3	20.7	3	88	0	88	38	0	25	35	1.56
13634383--13634425	19	2.3	19	84	11	54	53	2	4	39	1.34
13634419--13634472	3	18.0	3	100	0	108	66	0	0	33	0.92
13634387--13634588	15	14.5	13	70	17	63	51	8	2	36	1.48
13660160--13660200	21	2.0	21	85	0	55	29	29	31	9	1.89
13663047--13663089	21	2.0	21	95	0	77	39	27	2	30	1.69
13668651--13668994	145	2.4	145	92	0	553	37	18	17	27	1.93
13669619--13669650	14	2.3	14	94	0	55	46	0	9	43	1.35
13673075--13673101	9	3.0	9	100	0	54	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13677058--13677092	10	3.6	10	88	3	54	5	20	0	74	1.02
13678724--13678754	2	15.5	2	100	0	62	51	0	0	48	1.00
13683788--13683843	18	3.2	17	76	18	53	16	0	32	51	1.44
13687236--13687503	134	2.0	134	85	1	367	38	15	9	36	1.81
13688172--13688219	6	7.7	6	81	9	51	29	0	12	58	1.35
13688172--13688231	19	3.2	19	83	2	77	28	1	11	58	1.43
13688171--13688236	12	5.4	12	75	12	55	27	1	12	59	1.42
13690066--13690106	6	6.8	6	88	0	64	34	0	14	51	1.43
13690105--13690160	12	4.9	11	84	6	60	21	0	7	71	1.09
13690062--13690143	18	4.6	18	79	10	78	28	0	9	62	1.27
13690105--13690149	18	2.6	18	83	16	67	22	0	6	71	1.09
13691243--13691297	7	7.9	7	86	8	76	87	10	0	1	0.63
13691244--13691300	28	2.0	29	93	3	98	85	10	0	3	0.70
13692079--13692135	26	2.2	27	87	6	82	42	5	14	38	1.68
13692657--13692736	40	2.0	40	83	11	101	15	3	5	76	1.10
13692739--13692789	21	2.3	23	86	6	70	13	5	1	78	1.02
13692742--13692819	30	2.5	31	79	14	79	11	7	2	78	1.06
13692739--13692799	21	2.8	21	80	9	61	11	8	1	78	1.02
13692742--13692814	21	3.5	20	80	16	60	12	8	1	78	1.03
13692656--13692792	10	13.9	9	68	19	51	15	4	3	76	1.08
13692841--13693168	57	5.7	57	91	1	521	45	7	11	35	1.69
13692829--13693168	115	3.0	114	93	3	560	46	7	11	35	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13693819--13693882	32	2.0	32	90	6	103	26	21	3	48	1.65
13694891--13694931	3	14.0	3	84	5	57	63	2	0	34	1.08
13694894--13694935	20	2.0	21	95	4	77	61	4	0	33	1.17
13695047--13695117	29	2.5	28	79	9	81	46	1	5	46	1.35
13695752--13695805	24	2.2	24	78	12	58	75	0	11	12	1.04
13706533--13706601	19	3.7	19	86	3	95	17	5	33	43	1.73
13709481--13709520	3	13.0	3	84	5	53	32	2	0	65	1.06
13709842--13710299	129	3.7	126	81	7	463	42	5	9	42	1.61
13710850--13710895	2	23.0	2	100	0	92	50	0	0	50	1.00
13711097--13711132	4	9.2	4	93	6	65	25	25	0	50	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129