genome.fa.s13.2.7.7.80.10.50.1000.74.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  74  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14026636--14026676	21	1.9	22	95	5	75	0	2	14	82	0.76
14026691--14026892	81	2.5	81	91	4	318	37	23	16	22	1.94
14026691--14026887	41	4.8	41	94	4	317	36	24	16	22	1.94
14027924--14027960	18	2.1	18	90	5	58	5	16	0	78	0.93
14027924--14028007	28	3.1	27	83	6	89	9	14	0	76	1.02
14027947--14028008	10	6.7	9	82	12	72	9	12	0	77	0.99
14027959--14028008	19	2.7	19	90	3	75	12	12	0	76	1.04
14038424--14038452	15	1.9	15	100	0	58	27	0	6	65	1.18
14038396--14038885	61	8.1	59	81	10	459	35	10	5	48	1.61
14038394--14038842	187	2.5	180	85	8	563	34	10	5	48	1.62
14038885--14038959	11	6.5	11	76	14	62	80	2	2	14	0.94
14038888--14038959	5	14.0	5	72	18	51	80	2	2	13	0.93
14038896--14038956	6	9.5	6	77	13	59	81	1	3	13	0.88
14039873--14039920	23	2.1	23	88	7	71	70	2	4	22	1.15
14039831--14040015	70	2.7	68	80	12	177	69	2	3	24	1.17
14039946--14039989	17	2.6	16	85	7	52	79	4	0	15	0.89
14039941--14039993	23	2.3	23	87	6	72	79	3	0	16	0.88
14039941--14039983	13	3.0	13	78	21	50	79	4	0	16	0.90
14039939--14040043	11	9.7	10	74	20	63	71	1	1	24	1.06
14039939--14040043	4	26.8	4	66	30	50	71	1	1	24	1.06
14040084--14040117	16	2.1	16	94	0	59	85	2	0	11	0.71
14043682--14043728	3	15.7	3	100	0	94	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14043727--14043759	3	11.0	3	100	0	66	33	0	0	66	0.92
14046446--14046503	24	2.4	24	88	0	80	46	8	3	41	1.51
14046968--14047011	22	2.0	22	82	8	54	29	11	9	50	1.69
14047335--14047417	33	2.5	33	82	1	87	38	6	14	40	1.71
14047360--14047422	33	1.9	32	87	3	90	39	1	12	46	1.52
14053174--14053485	147	2.2	141	81	6	351	45	6	7	41	1.57
14053199--14053410	72	2.9	73	72	14	186	46	5	7	41	1.53
14053876--14053916	16	2.4	17	84	12	57	34	24	0	41	1.55
14054651--14054688	19	2.0	19	89	0	58	55	0	2	42	1.14
14054960--14055007	20	2.4	21	83	13	66	50	0	4	45	1.21
14058374--14058400	10	2.7	10	100	0	54	29	7	11	51	1.64
14072967--14073015	6	7.8	6	84	4	53	77	4	18	0	0.92
14072967--14073025	19	3.2	18	78	7	55	76	3	20	0	0.93
14073282--14073324	22	2.0	22	85	0	59	69	2	4	23	1.18
14074178--14074247	29	2.4	29	85	2	97	41	25	11	21	1.86
14075284--14075308	2	12.5	2	100	0	50	48	0	0	52	1.00
14078176--14078218	2	21.5	2	83	9	52	46	2	0	51	1.13
14079393--14079430	11	3.5	11	92	7	60	50	7	10	31	1.66
14080450--14080496	16	2.9	16	84	12	53	82	0	4	12	0.80
14080434--14080543	27	3.9	27	77	16	91	76	4	3	15	1.09
14080467--14080543	5	13.8	5	80	12	64	77	3	1	16	0.98
14080457--14080569	10	10.2	10	72	20	66	77	5	1	15	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14080451--14080543	21	4.4	21	69	17	61	78	3	3	15	1.01
14080460--14080543	6	14.7	6	80	9	79	78	3	2	15	0.99
14080466--14080568	47	2.2	47	83	6	122	76	5	0	16	1.03
14080768--14080801	7	4.7	7	88	3	50	2	0	8	88	0.62
14080765--14080801	15	2.6	14	87	8	56	2	0	8	89	0.58
14080843--14081241	41	9.8	41	76	10	327	44	17	14	23	1.85
14080856--14081241	83	4.7	83	76	11	366	44	17	14	23	1.85
14081379--14081428	16	3.2	16	75	16	59	40	12	8	40	1.72
14081417--14081455	16	2.5	15	84	12	51	43	0	12	43	1.42
14081729--14081830	45	2.3	43	86	8	143	40	14	6	38	1.73
14081831--14081928	21	4.5	21	76	9	79	36	13	8	41	1.74
14082327--14082479	79	1.9	79	81	5	184	29	22	8	39	1.84
14083027--14083060	6	5.7	6	90	10	52	11	0	0	88	0.52
14083021--14083100	10	8.1	10	71	19	53	8	8	1	81	0.94
14083027--14083060	13	2.8	12	91	8	52	11	0	0	88	0.52
14083021--14083107	37	2.3	37	80	11	97	9	9	1	80	0.96
14088075--14088140	31	2.1	31	85	0	87	48	19	12	19	1.80
14088537--14088620	3	27.7	3	83	7	107	69	1	1	28	1.04
14088529--14088662	18	6.5	21	77	16	77	70	4	1	23	1.13
14088536--14088637	21	4.6	21	78	14	75	69	2	0	26	1.09
14089259--14089381	25	4.9	24	81	5	84	45	26	6	21	1.76
14089282--14089380	12	7.9	13	72	7	71	46	24	6	23	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14089271--14089381	50	2.2	50	86	0	168	47	25	5	21	1.72
14089383--14089439	28	2.0	28	86	0	78	49	22	3	24	1.66
14089932--14091276	186	7.2	184	80	4	1357	39	9	14	36	1.79
14097309--14097339	9	3.4	9	95	0	53	22	0	19	58	1.40
14099059--14099134	34	2.2	34	90	0	116	40	22	10	26	1.86
14102937--14103050	59	1.9	59	89	0	174	28	30	13	27	1.94
14104338--14104366	6	5.0	6	95	4	51	48	0	0	51	1.00
14105000--14105050	20	2.5	21	84	12	63	33	13	3	49	1.61
14105852--14105972	62	1.9	64	88	5	183	44	15	10	28	1.80
14105989--14106155	64	2.6	64	79	5	151	39	11	14	34	1.82
14106042--14106167	64	2.0	64	83	0	162	38	11	13	35	1.82
14107511--14108390	125	7.1	125	83	6	999	32	12	16	38	1.86
14107511--14108390	126	7.1	125	83	5	948	32	12	16	38	1.86
14107511--14108271	241	3.1	243	86	4	978	32	12	16	38	1.86
14108846--14109012	61	2.8	60	83	4	185	41	6	10	41	1.65
14112437--14112484	25	1.9	25	84	16	64	37	0	4	58	1.18
14113845--14114041	7	30.9	7	67	20	94	17	2	36	44	1.60
14113844--14113998	44	3.6	42	76	14	133	18	1	35	43	1.61
14113888--14113989	19	5.1	19	71	16	55	18	1	35	44	1.61
14113858--14113943	26	3.3	26	76	12	81	19	3	32	44	1.68
14113924--14113993	24	2.8	24	81	14	79	15	0	37	47	1.46
14113908--14114038	19	6.9	19	75	15	112	14	1	39	44	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14113904--14114038	57	2.4	54	75	11	128	14	1	38	45	1.55
14116012--14116092	38	2.2	36	80	10	85	18	3	9	67	1.34
14116053--14116104	17	3.0	18	80	8	63	23	1	11	63	1.37
14116734--14117107	62	5.9	62	76	5	268	48	16	9	25	1.75
14116967--14117065	32	3.2	31	66	21	80	53	14	6	26	1.63
14116998--14117095	30	3.2	29	69	11	70	53	13	6	27	1.63
14116707--14117098	124	3.1	124	74	6	358	48	16	8	26	1.75
14117813--14117859	18	2.5	19	82	6	60	74	10	8	6	1.22
14131942--14132155	14	15.8	13	78	14	161	17	0	33	49	1.51
14131942--14132155	7	31.8	6	78	13	142	17	0	33	49	1.51
14133606--14133870	143	1.9	142	81	5	329	43	15	10	30	1.80
14136087--14136172	42	2.0	42	95	0	154	38	3	17	40	1.67
14136360--14136391	11	2.8	12	90	9	57	37	0	0	62	0.95
14136556--14136589	9	3.8	9	96	0	59	41	11	11	35	1.78
14142743--14142775	9	3.8	9	96	4	59	66	9	0	24	1.20
14152760--14152800	22	2.0	21	90	9	66	65	9	4	19	1.40
14152974--14153102	60	2.2	59	83	5	152	37	19	15	27	1.92
14153517--14153570	24	2.2	24	83	0	72	37	12	24	25	1.91
14154770--14155097	164	2.0	164	96	0	611	41	18	17	23	1.90
14158434--14158520	43	2.0	43	97	0	165	22	24	16	36	1.94
14168920--14168964	20	2.2	21	92	4	74	42	11	0	46	1.39
14168920--14168961	11	3.9	11	78	15	52	42	11	0	45	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14168958--14169035	28	2.7	28	82	7	86	51	14	0	34	1.42
14168864--14168989	56	2.2	56	75	8	123	45	16	0	38	1.48
14169134--14169186	17	3.2	16	75	17	54	47	24	0	28	1.52
14169134--14169185	8	6.1	9	84	8	56	48	25	0	26	1.52
14171414--14171449	18	2.0	18	88	0	54	52	5	8	33	1.55
14174116--14174626	253	2.0	251	92	2	844	37	8	7	46	1.63
14182168--14182417	84	3.0	83	76	2	203	35	14	16	34	1.89
14182427--14182588	40	4.1	39	75	9	130	37	14	12	35	1.84
14182431--14182582	79	1.9	79	82	0	187	39	14	11	34	1.82
14182513--14182757	40	6.1	40	75	6	129	35	11	15	36	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129