genome.fa.s13.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  98  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17702809--17702861	3	17.7	3	92	7	90	30	1	0	67	1.01
17702930--17702986	10	5.4	10	76	12	51	71	1	1	24	1.04
17702920--17703012	33	2.9	30	78	15	87	72	1	2	24	1.03
17702955--17703021	23	2.9	23	77	16	68	76	1	2	19	1.00
17703296--17703321	13	2.0	13	100	0	52	61	23	0	15	1.33
17703862--17704117	3	90.3	3	66	16	91	58	4	5	32	1.39
17703961--17703999	13	3.1	13	88	3	53	71	0	0	28	0.86
17703978--17704094	5	22.8	5	78	14	96	57	5	0	36	1.27
17703981--17704084	41	2.6	38	89	6	145	55	5	0	37	1.30
17704435--17704704	55	4.9	55	73	7	215	41	14	21	22	1.90
17704434--17704712	110	2.5	110	82	2	328	41	15	21	22	1.90
17717811--17717873	19	3.2	20	77	6	67	12	1	4	80	0.93
17718157--17718249	44	2.1	46	85	4	127	54	8	12	23	1.65
17722231--17722338	21	4.8	22	72	12	85	34	9	12	43	1.75
17722231--17722338	23	4.8	21	71	10	72	34	9	12	43	1.75
17722794--17722825	14	2.1	16	88	11	50	62	6	12	18	1.50
17724717--17724789	28	2.6	27	74	6	74	65	8	4	21	1.36
17725403--17725481	12	6.8	12	70	18	53	73	2	3	20	1.11
17725406--17725474	34	2.0	35	86	11	97	71	2	4	21	1.17
17725427--17725481	16	3.3	16	72	25	51	74	1	3	20	1.06
17726327--17726602	12	24.5	11	73	12	138	58	3	5	32	1.38
17726420--17726602	3	65.7	3	71	18	128	59	3	2	34	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17726327--17726602	31	8.1	36	68	16	137	58	3	5	32	1.38
17734371--17734434	34	1.9	33	90	3	101	43	15	18	21	1.87
17752011--17752044	14	2.4	14	95	0	59	70	11	0	17	1.16
17752018--17752064	22	2.1	22	88	0	67	68	12	0	19	1.21
17752555--17752590	18	2.1	17	94	5	63	75	8	5	11	1.19
17756009--17756157	78	1.9	77	81	8	178	39	12	12	35	1.81
17756074--17756105	15	2.2	15	94	5	57	56	15	0	28	1.40
17767722--17767761	21	1.9	21	84	0	53	40	2	2	55	1.27
17773535--17773582	22	2.1	23	85	11	64	68	0	8	22	1.16
17773535--17773585	25	2.1	23	82	13	59	70	0	7	21	1.12
17776854--17776899	21	2.2	21	84	7	58	32	6	0	60	1.22
17776940--17776974	17	2.1	17	94	0	61	8	17	0	74	1.06
17777362--17777410	26	1.9	25	83	4	62	4	6	12	77	1.09
17781873--17781918	21	2.2	21	84	7	58	23	17	15	43	1.87
17789230--17789330	52	1.9	52	92	4	168	32	8	12	45	1.74
17790450--17790475	3	8.7	3	100	0	52	30	0	0	69	0.89
17790669--17790717	23	2.2	21	82	10	62	48	12	14	24	1.77
17790675--17790717	23	1.9	22	90	4	68	41	13	16	27	1.86
17790795--17790863	30	2.4	28	80	9	77	68	7	8	15	1.38
17790795--17790865	29	2.4	29	84	13	101	67	8	8	15	1.40
17791437--17791471	12	2.9	12	95	0	61	40	2	0	57	1.14
17791951--17791984	11	3.3	11	92	8	54	79	0	0	20	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17793174--17793203	5	6.2	5	96	3	53	83	16	0	0	0.65
17794617--17794683	33	2.0	33	97	0	125	26	23	17	31	1.97
17803170--17803691	49	10.8	48	77	12	444	28	13	21	35	1.92
17803221--17803573	191	1.9	190	86	6	518	29	13	21	35	1.91
17803159--17803691	146	3.7	144	77	10	548	29	13	21	35	1.91
17803863--17803900	3	12.7	3	100	0	76	31	0	0	68	0.90
17803908--17803957	6	8.2	6	86	8	57	4	18	0	78	0.91
17803927--17803960	10	3.5	10	88	4	52	0	23	0	76	0.79
17803926--17803950	13	1.9	13	100	0	50	0	20	0	80	0.72
17805589--17805627	20	2.0	20	84	0	51	79	5	2	12	1.00
17817803--17817844	12	3.5	13	78	15	54	0	30	0	69	0.89
17818352--17818430	24	3.2	24	78	8	97	29	25	0	45	1.54
17821722--17821761	10	3.9	10	87	6	62	35	2	22	40	1.68
17821722--17821761	21	1.9	21	94	0	71	35	2	22	40	1.68
17826135--17826427	51	5.8	52	73	7	210	31	19	16	32	1.94
17826201--17826426	102	2.2	102	78	4	242	30	19	16	33	1.94
17826661--17826718	30	1.9	30	86	6	82	48	13	10	27	1.75
17827227--17827257	16	2.0	16	93	6	55	87	0	12	0	0.55
17828027--17828064	15	2.6	15	87	4	51	52	36	2	7	1.45
17828035--17828086	20	2.6	21	77	20	65	46	42	1	9	1.47
17828159--17828205	16	2.9	17	78	15	55	31	19	4	44	1.70
17831639--17831679	19	2.2	19	86	8	57	60	12	4	21	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17832754--17832795	15	2.8	15	92	0	66	57	2	23	16	1.51
17836390--17836434	19	2.4	18	88	7	63	75	2	4	17	1.07
17837558--17837695	64	2.2	64	86	2	188	39	9	25	25	1.85
17837705--17837747	23	1.9	23	95	4	79	46	16	9	27	1.77
17842987--17843033	14	3.3	14	88	8	60	76	2	2	19	0.99
17849892--17849942	19	2.7	19	82	11	52	76	1	3	17	1.03
17849912--17849946	14	2.4	14	90	4	52	80	2	0	17	0.84
17851061--17851198	64	2.2	64	86	2	188	39	9	25	25	1.85
17851208--17851249	22	1.9	22	100	0	84	45	16	9	28	1.79
17855524--17855555	9	3.4	9	91	8	55	87	0	9	3	0.64
17856501--17856535	14	2.4	14	90	4	52	80	2	0	17	0.84
17864283--17864334	21	2.5	20	77	17	54	73	5	9	11	1.25
17877929--17877971	20	2.2	19	87	4	59	23	0	25	51	1.49
17880898--17880937	13	3.1	13	81	0	53	67	2	7	22	1.28
17880929--17880980	21	2.7	20	82	8	54	76	1	3	17	1.02
17880950--17880984	14	2.5	14	90	9	54	80	0	0	20	0.72
17882195--17882482	114	2.5	112	81	7	339	37	14	24	23	1.93
17882220--17882631	114	3.6	115	78	4	303	36	14	24	24	1.93
17893923--17893976	23	2.3	23	84	6	74	77	0	1	20	0.86
17893919--17893984	18	3.6	18	80	15	73	75	0	3	21	0.93
17893918--17893984	14	4.3	15	73	17	57	76	0	2	20	0.92
17893912--17893991	18	4.6	17	77	16	67	72	0	6	21	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17893919--17893991	36	2.0	36	82	12	87	73	0	5	20	1.02
17894941--17894989	15	3.5	14	78	13	57	46	2	8	42	1.45
17897260--17897324	32	2.0	32	93	0	112	44	18	9	27	1.80
17897742--17897770	15	1.9	15	100	0	58	27	20	10	41	1.85
17898620--17898650	14	2.2	14	94	0	53	22	6	6	64	1.40
17898988--17899035	19	2.3	22	86	10	66	12	12	0	75	1.06
17908109--17908147	20	2.0	20	85	10	53	17	20	7	53	1.68
17908563--17908601	19	2.2	18	86	9	53	25	10	5	58	1.51
17909914--17909966	26	2.0	26	92	0	88	33	18	18	28	1.95
17910942--17910995	20	2.6	20	75	16	56	5	12	3	77	1.07
17911361--17911585	108	2.0	111	89	5	350	40	12	11	35	1.79
17917803--17917844	19	2.3	19	87	4	59	47	0	2	50	1.14
17918680--17918737	23	2.4	24	83	13	75	25	8	3	62	1.40
17919375--17919402	10	2.8	10	100	0	56	28	17	0	53	1.44
17920599--17920642	12	3.6	12	87	9	54	40	9	4	45	1.56
17920904--17920933	14	2.1	14	93	0	51	23	13	0	63	1.29
17922668--17922713	20	2.3	20	85	7	58	17	2	8	71	1.21
17926971--17927022	27	2.0	26	92	3	86	69	3	9	17	1.31
17927235--17927316	38	2.2	38	80	4	96	31	12	4	51	1.60
17929227--17929271	20	2.2	20	80	0	54	48	2	4	44	1.35
17929269--17929535	128	2.1	129	97	1	518	52	4	2	40	1.35
17929996--17930053	29	2.0	30	89	3	91	39	3	0	56	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17930141--17930245	29	3.7	29	72	11	99	54	3	7	34	1.47
17930718--17930766	26	1.9	26	88	12	75	57	0	0	42	0.99
17930715--17930786	25	3.0	25	81	15	82	54	0	0	45	0.99
17931209--17931234	11	2.4	11	100	0	52	73	0	0	26	0.84
17932569--17932659	3	30.3	3	88	0	128	63	2	3	30	1.22
17932693--17932865	93	1.9	93	86	2	249	28	20	30	20	1.98
17933122--17933766	240	2.7	238	83	4	771	43	14	23	18	1.87
17933123--17933764	120	5.4	120	81	5	647	42	14	23	19	1.87
17944682--17944715	15	2.3	15	94	0	59	0	14	5	79	0.91
17944792--17944839	14	3.4	14	80	11	53	81	0	2	16	0.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129