genome.fa.s13.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  112  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20103044--20103073	16	1.9	15	93	6	51	46	0	3	50	1.18
20105373--20105515	70	2.0	70	98	0	277	20	19	13	46	1.83
20114051--20114109	29	2.0	29	87	6	84	49	1	0	49	1.11
20114382--20114436	23	2.5	21	82	11	65	7	7	5	80	1.04
20114386--20114433	22	2.2	22	85	7	62	6	8	4	81	0.98
20121548--20121631	34	2.5	34	74	3	80	48	5	1	44	1.34
20127354--20127386	16	2.0	17	94	5	59	54	3	0	42	1.15
20127428--20127479	23	2.3	23	89	0	77	53	1	1	42	1.23
20128188--20128236	14	3.3	15	81	16	50	46	0	0	53	1.00
20130044--20130077	2	17.0	2	93	0	59	52	0	0	47	1.00
20133430--20133719	45	6.8	42	71	13	121	43	13	26	16	1.85
20133557--20133674	45	2.7	42	84	8	148	47	11	23	16	1.80
20133557--20133721	87	1.9	87	85	7	228	45	12	24	17	1.83
20133688--20133920	117	2.0	117	93	0	394	41	13	26	19	1.88
20136042--20136073	16	2.0	16	93	0	55	84	3	6	6	0.86
20136456--20136509	11	4.7	11	82	8	72	83	0	16	0	0.65
20136460--20136500	16	2.5	17	88	4	66	82	0	17	0	0.66
20136560--20136616	29	2.0	28	83	10	71	33	1	3	61	1.23
20136649--20136713	27	2.3	30	82	12	84	46	1	1	50	1.20
20136923--20136999	4	19.8	4	72	17	56	46	1	5	46	1.33
20136968--20137013	23	2.0	23	87	8	67	41	4	2	52	1.33
20136971--20137032	27	2.2	28	80	5	72	43	3	1	51	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20136575--20137205	321	2.0	321	91	0	1030	41	9	2	46	1.50
20137268--20137297	15	2.1	14	93	6	51	83	0	6	10	0.81
20138739--20138791	27	2.0	27	96	0	97	20	13	11	54	1.69
20141188--20141230	14	3.0	14	82	3	50	83	2	13	0	0.74
20141267--20141312	17	2.7	17	86	0	65	82	0	15	2	0.76
20141267--20141308	19	2.1	20	86	8	59	83	0	14	2	0.75
20141267--20141314	21	2.5	19	86	10	62	81	0	16	2	0.79
20141270--20141330	28	2.3	26	78	13	70	77	0	21	1	0.86
20141353--20141392	20	2.0	20	90	0	62	87	5	5	2	0.73
20141345--20141408	24	2.6	25	80	9	69	79	6	10	3	1.02
20141364--20141408	21	2.0	21	87	12	63	84	4	6	4	0.87
20144713--20144747	12	2.8	13	86	8	54	22	2	5	68	1.24
20144713--20144751	12	3.2	12	85	7	53	20	2	7	69	1.26
20145321--20145365	23	2.0	23	95	4	83	31	4	8	55	1.51
20145325--20145434	22	5.6	20	71	24	74	32	5	9	52	1.56
20145313--20145465	55	2.9	55	90	3	242	31	5	9	52	1.58
20145376--20145420	23	2.0	23	91	4	74	33	4	6	55	1.46
20145406--20145467	31	2.0	31	90	0	97	33	6	9	50	1.61
20145531--20145578	19	2.5	20	83	13	64	31	4	8	56	1.48
20145677--20145768	18	5.0	19	72	16	77	32	4	13	50	1.61
20147137--20147501	139	2.6	139	92	0	595	28	11	10	50	1.70
20148492--20148530	10	3.7	10	89	6	51	84	2	12	0	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20148896--20148935	21	1.9	21	89	0	62	75	0	15	10	1.05
20150471--20150542	37	2.0	36	83	2	90	34	6	15	43	1.73
20150521--20150606	36	2.4	35	82	5	100	33	9	18	38	1.83
20150697--20150762	18	3.7	17	72	8	51	25	7	19	46	1.76
20150757--20150792	18	2.0	18	100	0	72	33	16	5	44	1.71
20150780--20150827	23	2.1	23	92	7	80	29	18	8	43	1.79
20150814--20150863	18	2.8	17	87	6	64	28	22	8	42	1.81
20150788--20150836	23	2.1	23	88	0	71	26	20	10	42	1.84
20151176--20151235	22	2.7	22	79	5	68	36	16	13	33	1.88
20151310--20151633	43	7.6	43	80	4	341	27	12	19	41	1.86
20151267--20151633	85	4.3	84	79	8	330	28	11	18	40	1.86
20151267--20151633	128	2.8	128	82	6	404	28	11	18	40	1.86
20151883--20151913	14	2.2	14	94	0	53	19	0	3	77	0.90
20151878--20151924	20	2.3	20	85	0	58	17	0	6	76	0.98
20152528--20152586	20	2.8	19	82	12	55	30	5	10	54	1.56
20152528--20152572	23	2.0	23	95	4	83	31	4	8	55	1.51
20152558--20152618	31	2.0	31	90	0	95	31	8	9	50	1.65
20152703--20152798	19	5.3	18	69	20	67	28	4	14	53	1.60
20152885--20152968	18	4.7	18	74	14	77	35	4	11	47	1.61
20152972--20153025	24	2.2	24	81	15	58	27	7	16	48	1.73
20164324--20164411	8	11.5	8	74	11	69	15	1	30	52	1.51
20164324--20164411	15	5.9	14	74	14	70	15	1	30	52	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20164324--20164434	37	2.9	38	81	11	138	18	1	28	51	1.56
20164347--20164413	23	3.0	22	77	16	66	13	2	32	50	1.56
20164424--20164471	15	3.2	15	82	8	62	22	2	25	50	1.60
20164440--20164479	15	2.6	15	88	4	62	27	0	22	50	1.50
20164834--20164888	23	2.4	23	78	6	58	21	1	32	43	1.63
20165012--20165057	16	2.9	15	79	17	56	17	4	6	71	1.24
20166144--20166184	20	2.0	21	90	9	66	4	0	21	73	1.02
20166407--20166485	3	27.3	3	78	7	65	27	2	6	63	1.32
20166407--20166436	10	2.8	11	90	10	53	36	0	0	63	0.95
20166420--20166488	24	2.9	23	82	2	84	24	2	7	65	1.32
20167270--20167313	22	1.9	23	90	9	72	11	11	2	75	1.15
20172021--20172068	16	3.1	15	78	6	51	83	0	10	6	0.81
20172021--20172068	15	3.1	15	75	16	53	83	0	10	6	0.81
20174438--20174506	3	24.3	3	79	8	74	28	1	4	65	1.21
20174438--20174502	28	2.3	28	80	12	80	29	1	4	64	1.22
20174441--20174506	34	1.9	34	87	0	96	28	1	4	65	1.21
20174426--20174509	25	3.2	24	77	19	89	26	1	5	66	1.21
20174946--20174986	10	4.2	10	84	6	57	60	9	12	17	1.57
20174948--20174985	19	2.0	20	89	5	60	60	10	10	18	1.57
20175283--20175321	18	2.4	16	87	12	53	10	2	2	84	0.81
20176536--20176644	30	3.6	30	81	4	114	47	0	8	44	1.33
20179291--20179373	43	1.9	44	90	2	132	25	7	9	57	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20181615--20181647	15	2.1	16	88	5	50	9	6	18	66	1.40
20185023--20185059	19	1.9	19	88	0	56	51	0	2	45	1.15
20185110--20185148	17	2.3	17	86	0	51	69	0	10	20	1.17
20186975--20187023	26	2.0	24	84	8	62	12	8	2	77	1.07
20187605--20187641	3	12.3	3	94	0	65	32	0	2	64	1.07
20187772--20187834	21	3.2	21	67	10	53	66	1	0	31	1.01
20193933--20193970	18	2.1	18	95	5	67	21	0	2	76	0.91
20193932--20193970	8	4.5	8	84	15	51	23	0	2	74	0.94
20194790--20194834	21	2.1	21	95	0	81	22	35	15	26	1.94
20196047--20196097	21	2.4	21	84	12	68	27	15	25	31	1.96
20196069--20196285	104	2.1	103	80	2	238	33	16	16	33	1.91
20196144--20196506	106	3.5	104	76	8	315	35	14	15	34	1.88
20196246--20196518	106	2.6	106	84	4	356	34	13	16	35	1.87
20196482--20196523	22	1.9	22	95	0	75	30	14	23	30	1.94
20196778--20197132	96	3.5	101	77	11	316	34	14	16	34	1.89
20197106--20197151	22	2.1	21	84	4	56	34	17	17	30	1.93
20197443--20197533	26	3.5	26	73	0	83	27	15	20	36	1.93
20203893--20203950	18	3.5	17	81	9	57	3	3	6	86	0.79
20203909--20203966	25	2.3	26	84	3	73	6	0	10	82	0.83
20206688--20206719	13	2.3	15	89	10	50	21	0	6	71	1.07
20207066--20207092	10	2.7	10	100	0	54	25	0	0	74	0.83
20207089--20207127	11	3.5	11	92	3	60	28	0	2	69	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20209147--20209249	30	3.5	29	76	10	102	44	2	12	39	1.57
20210277--20210308	9	3.8	9	88	12	50	75	0	15	9	1.05
20212767--20212792	1	26.0	1	100	0	52	0	0	0	100	0.00
20213579--20213662	44	1.9	44	87	4	125	42	7	8	41	1.62
20214641--20214810	86	2.0	86	96	0	313	37	8	12	41	1.73
20217779--20217835	24	2.4	24	100	0	114	36	5	7	50	1.52
20221762--20221787	3	8.7	3	100	0	52	30	0	0	69	0.89
20222141--20222190	21	2.3	23	86	6	68	2	20	2	76	0.99
20230472--20230868	145	2.7	143	82	5	467	41	12	12	33	1.80
20231345--20231392	8	5.8	8	76	9	51	2	0	12	85	0.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129