Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  40  of  129  ( 15449 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8193253--8193320
24
2.7
26
73
17
72
32
1
5
60
1.30
8193526--8193566
22
1.9
21
85
5
55
73
0
21
4
1.02
8193550--8193600
23
2.2
23
82
6
59
74
0
15
9
1.06
8193530--8193617
31
2.8
31
73
16
81
72
0
20
6
1.07
8193581--8193637
29
1.9
30
82
3
71
71
0
22
5
1.05
8193952--8194079
64
2.0
65
87
1
186
38
16
5
39
1.72
8194130--8194200
30
2.4
29
86
6
90
38
7
2
52
1.44
8194357--8194498
62
2.3
61
80
6
153
41
12
3
42
1.60
8197437--8197461
2
12.5
2
100
0
50
48
0
0
52
1.00
8198873--8198948
30
2.5
30
80
14
86
42
9
3
44
1.55
8199606--8199671
3
23.7
3
82
11
79
66
0
0
33
0.92
8201188--8201234
17
2.8
17
84
15
71
51
27
0
21
1.48
8201181--8201257
33
2.4
34
78
10
90
48
28
0
23
1.51
8201181--8201258
32
2.4
32
81
8
95
47
28
0
24
1.52
8201188--8201302
17
6.9
17
71
13
69
46
28
1
23
1.62
8201161--8201377
16
13.9
16
70
15
75
46
28
1
23
1.61
8201358--8201398
21
2.0
21
85
4
57
48
34
0
17
1.47
8201324--8201430
51
2.1
51
84
6
137
49
33
0
16
1.46
8201367--8201428
14
4.2
14
80
10
61
51
32
0
16
1.44
8201318--8201428
14
7.1
15
69
20
59
50
32
0
17
1.46
8201318--8201377
14
4.1
14
79
8
66
51
31
0
16
1.45
8211880--8211933
25
2.1
26
83
10
67
40
12
1
44
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8217982--8218013
2
16.0
2
100
0
64
50
0
0
50
1.00
8220646--8220802
52
3.0
52
90
3
246
26
25
8
39
1.84
8220827--8220869
11
3.9
11
90
0
68
46
25
0
27
1.53
8221100--8221146
25
2.0
25
83
8
62
29
34
4
31
1.77
8221110--8221171
25
2.5
25
84
7
74
24
35
3
37
1.72
8221196--8221303
31
3.5
30
86
5
144
27
23
18
30
1.98
8223949--8224087
58
2.4
58
86
3
203
35
12
6
44
1.69
8227811--8227855
22
2.0
22
87
8
65
46
0
4
48
1.22
8228527--8228577
26
2.0
26
100
0
102
50
13
3
31
1.60
8230627--8230719
11
7.9
11
70
19
55
49
0
2
48
1.13
8232205--8232371
83
2.0
83
95
0
298
46
5
17
29
1.72
8237270--8237296
14
1.9
14
100
0
54
74
0
14
11
1.08
8237270--8237308
15
2.7
15
88
4
53
76
0
15
7
0.99
8237294--8237338
18
2.6
18
89
10
67
80
0
17
2
0.82
8237289--8237364
29
2.4
32
74
14
77
77
0
18
3
0.92
8237292--8237366
38
2.0
37
87
5
107
76
0
20
4
0.95
8237292--8237354
22
3.2
21
80
19
82
77
0
19
3
0.90
8237293--8237354
10
6.4
9
76
23
56
77
0
19
3
0.90
8238543--8238989
42
11.0
41
86
8
569
21
17
23
38
1.93
8238543--8238989
82
5.5
80
86
7
559
21
17
23
38
1.93
8238997--8239065
16
4.2
16
88
5
95
91
5
0
2
0.51
8238997--8239065
1
69.0
1
83
0
84
91
5
0
2
0.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8239267--8239296
16
1.9
15
93
6
51
13
0
0
86
0.57
8239950--8239992
20
2.2
19
83
4
50
23
27
20
27
1.99
8240336--8240375
12
3.2
12
82
6
53
10
0
5
85
0.75
8240341--8240379
20
2.0
20
90
10
62
12
0
5
82
0.83
8240336--8240382
11
4.0
11
82
15
58
12
0
4
82
0.80
8240460--8240746
64
4.7
60
90
7
420
47
6
12
33
1.68
8240460--8240762
65
4.9
62
88
8
417
48
7
11
32
1.68
8241624--8241726
54
1.9
54
88
4
154
45
11
13
29
1.79
8242345--8242374
13
2.2
14
94
5
53
13
13
0
73
1.10
8242727--8242767
10
3.8
11
84
12
50
4
7
4
82
0.93
8242728--8242768
11
3.6
11
86
3
55
2
7
4
85
0.81
8243554--8244423
139
6.6
133
74
12
500
48
11
12
27
1.75
8244487--8244524
16
2.4
16
90
0
58
50
2
21
26
1.62
8245680--8245819
71
2.0
70
81
5
165
51
11
7
30
1.64
8245791--8245860
24
3.0
24
83
8
83
52
7
7
32
1.56
8245824--8245879
21
2.8
20
81
7
60
50
10
8
30
1.68
8245931--8245984
26
2.0
27
86
10
76
66
9
1
22
1.30
8246425--8246468
12
3.7
12
78
0
52
52
15
11
20
1.74
8247570--8247611
21
2.0
21
90
0
66
47
14
4
33
1.65
8248150--8248207
18
3.1
18
85
5
62
44
1
1
51
1.21
8248160--8248219
19
3.2
19
86
6
70
41
1
0
56
1.09
8248417--8248448
11
2.8
11
95
4
55
53
12
0
34
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8250699--8250768
35
2.0
35
91
0
113
57
1
4
37
1.27
8251394--8251669
102
2.7
101
81
5
322
39
9
7
42
1.67
8254932--8255052
5
23.2
5
74
20
58
73
0
8
18
1.07
8254932--8255040
12
9.8
11
69
19
66
74
0
8
17
1.05
8254943--8255085
24
5.8
24
68
21
68
72
0
8
19
1.10
8254967--8255039
17
4.1
17
78
13
60
78
0
6
15
0.96
8254994--8255066
31
2.3
32
84
11
89
75
0
6
17
1.02
8255290--8255401
32
3.5
32
87
0
143
41
7
19
32
1.79
8255395--8255479
37
2.3
37
80
9
86
35
11
17
35
1.87
8259615--8259712
26
3.9
26
73
10
87
53
9
11
26
1.66
8259635--8259727
48
1.9
48
84
0
123
52
11
11
23
1.71
8262524--8262605
12
6.8
11
75
19
58
71
1
6
20
1.14
8262524--8262570
18
2.8
17
87
6
60
72
2
8
17
1.19
8262559--8262605
19
2.5
20
79
10
62
74
0
2
23
0.93
8262544--8262616
24
3.0
24
82
11
78
72
1
2
23
1.05
8262517--8262612
6
17.4
5
72
21
52
71
2
5
20
1.15
8264722--8264752
11
2.8
11
100
0
62
45
9
0
45
1.36
8266059--8266106
17
2.9
17
78
3
53
52
2
4
41
1.32
8266442--8266489
17
2.8
17
77
22
55
45
0
2
52
1.12
8266445--8266482
20
1.9
20
89
10
60
44
0
2
52
1.14
8266519--8266594
24
3.1
24
78
3
71
44
3
1
50
1.29
8269809--8269838
16
1.9
15
93
6
51
36
0
0
63
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8270596--8270832
117
2.0
117
98
0
456
36
19
21
22
1.95
8272048--8272300
126
2.0
126
89
1
382
24
10
22
42
1.85
8274177--8274206
7
4.3
7
91
0
51
16
30
26
26
1.97
8276516--8276540
9
2.8
9
100
0
50
60
0
8
32
1.26
8276509--8276598
6
14.8
6
81
6
56
70
0
5
24
1.09
8276872--8276900
15
1.9
15
100
0
58
62
0
6
31
1.22
8278300--8278788
40
12.0
40
89
6
718
22
18
20
38
1.94
8278300--8278788
121
4.0
122
95
2
840
22
18
20
38
1.94
8278300--8278788
243
2.0
246
94
2
860
22
18
20
38
1.94
8278811--8278862
7
6.8
8
89
10
74
88
11
0
0
0.52
8278795--8278861
14
4.7
14
83
12
84
88
10
0
1
0.59
8278795--8278853
7
8.6
7
85
7
77
89
8
0
1
0.54
8278795--8278854
1
60.0
1
79
0
66
90
8
0
1
0.53
8278950--8278987
20
1.9
20
89
10
60
18
31
28
21
1.97
8279050--8279168
16
7.2
17
70
16
56
29
0
6
63
1.19
8280214--8280683
122
3.9
117
87
8
637
46
7
12
33
1.69
8280214--8280683
59
7.9
58
86
9
626
46
7
12
33
1.69
8280214--8280683
179
2.6
178
88
6
655
46
7
12
33
1.69
8284210--8284260
25
2.0
26
84
3
68
50
1
0
47
1.12
8284220--8284284
29
2.2
29
89
5
96
53
1
1
43
1.19
8284284--8284341
27
2.2
27
84
9
75
37
0
3
58
1.15
8284356--8284405
24
2.1
24
84
0
64
46
2
2
50
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8287650--8287679
16
1.9
15
93
6
51
36
0
0
63
0.95
8288436--8288673
117
2.0
118
97
0
451
36
19
21
23
1.95
8288958--8288989
16
2.0
16
100
0
64
12
6
31
50
1.65
8290718--8290790
29
2.5
29
80
14
87
52
5
5
36
1.48
8290718--8290792
30
2.6
29
83
10
84
53
5
5
36
1.47
8295881--8296037
22
7.2
22
74
6
122
37
7
2
52
1.42
8295964--8296003
21
1.9
21
100
0
80
37
12
0
50
1.41
8302404--8302438
17
2.1
17
100
0
70
5
22
11
60
1.52
8302875--8302919
2
22.5
2
95
0
81
2
46
0
51
1.13
8314839--8314912
37
2.0
37
94
0
130
35
10
10
43
1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129