genome.fa.s13.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  30  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6166315--6166391	22	3.5	22	80	0	82	40	24	6	28	1.80
6167390--6167428	6	6.7	6	94	5	62	15	2	10	71	1.23
6167377--6167428	18	2.9	18	82	8	61	15	3	7	73	1.21
6170742--6170811	36	1.9	36	97	0	131	18	28	28	24	1.98
6171499--6171676	48	3.8	48	75	3	153	17	12	32	37	1.88
6171504--6171690	94	2.0	94	84	0	248	18	13	31	36	1.90
6181740--6181802	27	2.3	27	78	5	65	57	1	0	41	1.08
6182231--6182260	16	1.9	15	93	6	51	16	0	0	83	0.65
6182225--6182269	9	5.1	9	84	15	51	17	0	4	77	0.92
6182312--6182341	14	2.2	13	94	5	51	83	10	0	6	0.81
6183880--6184321	29	15.4	28	70	15	106	48	28	2	19	1.63
6183880--6183982	14	7.3	14	70	9	57	51	26	1	20	1.58
6183885--6184299	42	9.7	43	68	14	137	48	29	2	19	1.64
6183923--6183995	14	5.1	14	70	11	51	50	28	1	19	1.56
6184042--6184298	14	17.7	14	74	14	200	47	31	3	17	1.63
6184033--6184316	29	9.7	29	82	8	319	46	30	3	19	1.65
6184042--6184337	88	3.4	86	76	7	285	47	31	2	18	1.63
6186027--6186077	21	2.4	21	96	0	93	47	3	17	31	1.66
6190949--6191011	22	2.8	22	80	2	81	36	23	19	20	1.95
6191203--6191449	33	7.5	33	78	8	159	31	17	14	37	1.89
6191203--6191381	99	1.8	98	84	3	243	32	16	12	38	1.86
6192641--6192714	22	3.4	22	66	7	60	36	20	9	33	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6192793--6192876	36	2.3	36	81	4	89	20	16	17	45	1.86
6192722--6192861	71	2.0	71	80	5	158	18	15	18	47	1.83
6192822--6192890	36	1.9	36	84	0	93	23	18	14	43	1.87
6192834--6192979	74	2.0	74	80	2	168	19	19	14	47	1.83
6195090--6195181	14	6.4	14	72	15	80	52	23	3	20	1.61
6195095--6195179	43	2.0	43	88	4	127	50	25	2	21	1.60
6195097--6195201	43	2.4	42	84	4	120	51	27	1	19	1.57
6195140--6195201	14	4.3	14	74	13	54	53	29	1	16	1.52
6195168--6195215	21	2.2	22	81	3	62	52	25	0	22	1.48
6195240--6195489	29	8.7	29	72	13	185	48	29	2	19	1.61
6195255--6195367	22	5.1	23	73	14	94	51	26	0	21	1.54
6195241--6195459	87	2.6	84	89	4	323	49	28	2	20	1.61
6195350--6195389	21	2.0	20	90	5	62	47	32	2	17	1.61
6195241--6195490	14	17.4	14	70	14	107	48	29	2	19	1.61
6195240--6195574	30	11.8	29	73	13	207	48	29	2	19	1.60
6195464--6195511	21	2.3	21	88	0	69	47	33	4	14	1.63
6195405--6195563	80	2.0	81	87	1	230	47	30	2	18	1.62
6198254--6198293	2	20.0	2	100	0	80	50	0	0	50	1.00
6202691--6202904	111	1.9	111	91	1	349	44	18	22	14	1.86
6205649--6205681	13	2.5	13	95	0	57	48	0	0	51	1.00
6217877--6217994	61	1.9	62	85	1	166	39	8	7	44	1.63
6217875--6218025	61	2.5	61	80	3	151	40	7	8	43	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6218219--6218269	21	2.3	21	80	10	50	66	3	29	0	1.09
6233499--6233571	36	2.0	36	100	0	146	19	8	24	47	1.76
6234386--6234436	24	2.1	24	85	7	68	39	5	1	52	1.37
6234624--6234745	20	5.8	20	74	13	95	45	1	1	50	1.21
6234658--6234745	39	2.2	38	84	6	104	43	2	2	52	1.26
6234630--6234770	11	14.0	10	65	25	50	42	2	1	53	1.21
6234871--6234923	21	2.5	21	90	3	79	45	7	0	47	1.31
6234948--6234982	6	5.7	6	93	6	61	51	0	0	48	1.00
6236076--6236124	18	2.9	17	85	11	57	44	2	0	53	1.12
6236134--6236186	13	3.9	13	76	9	52	52	0	1	45	1.11
6236128--6236189	28	2.2	28	80	8	81	58	0	1	40	1.08
6237277--6237304	2	14.0	2	100	0	56	50	0	0	50	1.00
6240193--6240224	2	16.0	2	93	0	55	0	0	46	53	1.00
6241603--6241637	17	2.1	17	89	5	54	54	0	2	42	1.15
6241607--6241651	21	2.2	20	84	4	54	48	0	2	48	1.13
6241672--6241710	5	7.8	5	88	0	51	28	0	0	71	0.86
6241668--6241710	15	2.9	15	89	0	59	32	0	0	67	0.91
6253043--6253111	23	3.2	22	77	16	65	37	1	0	60	1.06
6253052--6253111	23	2.7	23	80	14	72	36	1	0	61	1.06
6259093--6259155	18	3.7	17	75	12	58	60	0	9	30	1.28
6277305--6277382	40	2.0	40	89	0	120	46	7	0	46	1.31
6277318--6277383	18	3.3	19	77	14	62	48	6	0	45	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6277297--6277566	114	2.4	110	85	3	342	40	8	1	49	1.43
6277432--6277495	20	3.2	20	70	24	62	43	3	1	51	1.26
6277422--6277467	22	2.0	24	83	8	60	39	6	0	54	1.26
6277464--6277620	70	2.2	73	82	4	185	41	7	2	48	1.45
6277751--6277820	26	2.7	26	80	13	72	48	0	0	51	1.00
6279327--6279395	33	2.2	30	80	10	84	46	5	4	43	1.47
6279333--6279394	33	1.9	33	87	6	92	41	6	4	46	1.51
6281339--6281382	23	1.9	23	85	0	61	70	4	0	25	1.06
6285936--6285961	7	3.7	7	100	0	52	61	0	38	0	0.96
6285936--6285970	14	2.5	14	90	0	52	57	2	40	0	1.14
6287316--6287716	117	3.4	117	85	6	569	34	13	7	44	1.72
6287733--6287813	17	4.6	16	79	17	74	80	2	3	13	0.95
6287733--6287796	26	2.4	27	84	5	76	81	3	3	12	0.93
6287728--6287801	34	2.1	34	85	7	96	79	2	4	13	0.98
6287743--6287812	11	6.2	11	78	17	63	81	2	2	12	0.91
6287729--6287818	26	3.6	25	72	19	73	78	2	5	13	1.01
6287836--6287879	4	10.8	4	80	4	52	77	2	2	18	0.98
6287839--6287874	13	2.8	13	91	4	56	80	2	0	16	0.83
6287728--6287874	16	9.0	16	69	16	81	74	4	3	18	1.12
6288725--6288761	19	1.9	19	100	0	74	75	0	5	18	0.99
6288728--6288979	4	65.2	4	70	18	80	67	2	1	27	1.13
6288758--6288868	3	35.7	3	74	20	63	67	1	1	28	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6288693--6288762	31	2.3	30	82	9	88	74	1	5	18	1.09
6288715--6288836	65	1.9	64	84	5	165	69	1	4	24	1.15
6288757--6288979	12	18.2	12	70	20	94	66	3	1	28	1.15
6288803--6288975	41	4.3	38	73	15	141	67	2	0	29	1.10
6288730--6288892	74	2.2	75	80	11	176	68	1	1	27	1.10
6288802--6288991	86	2.2	84	77	18	207	67	3	0	28	1.10
6288838--6289003	80	2.0	84	80	11	193	67	4	1	27	1.16
6289159--6289213	20	2.8	20	85	0	83	0	1	10	87	0.63
6289160--6289220	29	2.1	28	88	8	88	0	3	11	85	0.72
6289227--6289399	41	4.2	41	90	1	265	36	24	15	23	1.94
6289227--6289535	82	3.6	84	75	16	315	36	24	15	22	1.93
6289385--6289414	15	2.0	15	93	0	51	26	30	13	30	1.94
6289344--6289455	56	2.0	56	94	0	197	35	25	14	24	1.93
6289402--6289535	41	3.3	41	96	0	250	37	25	14	22	1.93
6289303--6289496	97	2.0	97	94	0	343	36	24	15	24	1.94
6289271--6289535	138	1.9	138	96	0	485	36	24	15	23	1.93
6293069--6293186	32	3.6	32	72	17	100	69	2	5	22	1.22
6293071--6293383	4	77.8	4	66	19	61	66	3	2	26	1.22
6293136--6293243	3	34.7	3	73	20	57	67	1	1	28	1.11
6293093--6293214	65	1.9	64	83	11	160	68	1	4	24	1.18
6293106--6293396	35	7.9	35	70	20	136	67	3	2	27	1.19
6293342--6293382	18	2.4	17	88	8	64	73	7	0	19	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6293125--6293394	96	2.9	91	78	12	234	67	4	1	27	1.18
6293342--6293396	15	3.5	15	76	18	51	74	5	0	20	1.01
6308346--6308376	15	2.0	15	93	6	53	90	6	0	3	0.55
6308346--6308377	16	2.0	16	93	0	55	90	6	0	3	0.53
6309019--6309043	13	1.9	13	100	0	50	64	12	0	24	1.27
6310749--6310777	14	2.1	14	100	0	58	34	13	6	44	1.71
6311033--6311066	5	6.6	5	86	6	50	17	0	0	82	0.67
6311111--6311302	109	1.8	106	82	12	250	44	11	8	34	1.71
6313272--6313382	55	2.0	55	87	3	161	36	9	6	46	1.63
6313440--6313472	3	11.0	3	87	12	50	66	0	0	33	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129