genome.fa.s13.2.7.7.80.10.50.1000.63.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  63  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12081207--12081386	58	3.1	59	84	4	233	43	6	12	38	1.67
12084442--12084488	23	2.1	23	84	11	62	38	21	8	31	1.83
12088722--12088778	28	2.0	28	83	12	73	14	7	3	75	1.14
12089277--12089314	16	2.4	16	86	8	51	15	2	2	78	0.97
12089380--12089404	7	3.6	7	100	0	50	24	12	0	64	1.27
12089766--12089795	10	3.1	10	95	4	53	63	0	0	36	0.95
12091946--12091982	11	3.4	11	88	0	56	59	5	0	35	1.20
12092069--12092125	10	5.5	10	75	6	51	35	3	0	61	1.13
12092063--12092164	28	3.6	29	80	5	111	37	2	0	58	1.20
12092079--12092332	10	26.6	10	64	21	73	41	2	1	53	1.26
12092176--12092340	13	13.2	13	65	17	64	46	1	1	50	1.19
12092260--12092310	18	2.8	18	77	13	52	41	0	0	58	0.98
12092282--12092323	11	3.3	12	76	23	50	38	0	0	61	0.96
12092262--12092332	25	2.8	26	82	8	92	40	0	0	59	0.98
12092276--12092332	26	2.2	25	90	6	87	38	0	0	61	0.96
12092642--12092680	18	2.3	16	91	8	60	33	0	0	66	0.92
12093417--12093468	16	3.2	16	81	10	61	36	0	5	57	1.23
12093405--12093468	32	2.0	33	84	9	87	39	0	4	56	1.20
12094655--12094701	19	2.5	19	82	6	60	53	0	2	44	1.12
12097406--12097450	21	2.1	20	84	12	54	11	2	6	80	0.99
12097649--12098058	104	4.0	104	81	7	406	34	11	15	38	1.83
12097649--12098056	207	2.0	207	81	3	491	34	11	15	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12098035--12098077	22	2.0	22	90	0	68	37	9	16	37	1.81
12098734--12098788	26	2.1	26	89	0	83	34	14	18	32	1.91
12098843--12098904	32	1.9	32	83	0	79	27	11	25	35	1.90
12100475--12100516	19	2.2	19	83	12	50	2	19	7	71	1.20
12103869--12103907	20	2.0	19	85	5	51	33	7	5	53	1.51
12109699--12109736	20	1.9	19	85	15	51	57	7	2	31	1.41
12110374--12110450	14	5.2	14	77	10	73	19	1	32	46	1.58
12110373--12110461	15	5.9	15	76	10	83	19	1	32	47	1.57
12110383--12110503	16	7.7	15	75	14	68	22	1	28	47	1.61
12111879--12111954	18	4.3	17	78	20	68	5	1	15	77	1.01
12111878--12111940	32	1.9	33	90	9	103	4	1	14	79	0.97
12111876--12111952	39	1.9	41	84	5	104	5	1	14	79	0.97
12111927--12111970	18	2.4	18	92	0	70	11	2	13	72	1.21
12111891--12111958	32	2.1	33	83	8	86	7	0	16	76	1.00
12111886--12111972	39	2.2	39	80	9	97	8	1	13	77	1.05
12112209--12112260	22	2.4	22	87	6	70	26	19	25	28	1.98
12112231--12112444	110	1.9	110	87	1	313	39	17	21	22	1.92
12112349--12112545	87	2.2	88	85	4	265	38	18	21	21	1.93
12112250--12113158	197	4.6	195	75	9	709	39	17	20	22	1.92
12112437--12112771	109	3.1	108	82	6	397	38	17	21	22	1.93
12112633--12112676	22	2.0	22	90	0	70	34	15	20	29	1.94
12112701--12112939	87	2.7	88	82	7	281	40	15	20	23	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12112919--12112961	22	2.0	22	85	0	59	30	18	23	27	1.98
12112954--12113136	88	2.1	87	91	1	294	42	18	18	21	1.89
12113116--12113158	22	2.0	22	90	0	68	27	18	25	27	1.98
12113070--12113253	95	1.9	95	85	4	255	41	18	16	22	1.90
12113210--12113261	22	2.4	22	80	0	59	40	15	15	28	1.88
12113227--12113281	22	2.5	22	87	3	74	34	20	18	27	1.95
12113564--12113606	22	2.0	22	90	0	68	27	13	25	32	1.94
12113255--12113653	220	1.8	221	79	2	471	41	16	18	23	1.90
12113233--12113694	110	4.2	109	77	3	334	40	16	18	24	1.91
12113597--12113782	88	2.1	87	89	5	277	40	14	19	24	1.89
12113526--12113891	197	1.8	199	86	5	528	41	15	18	24	1.89
12113870--12113913	22	2.0	22	86	0	61	34	18	20	27	1.96
12113674--12114345	110	6.1	110	79	2	613	39	15	20	23	1.91
12113689--12114348	219	3.0	216	79	4	666	39	15	20	23	1.91
12113685--12114937	329	3.7	328	74	11	801	39	16	20	23	1.92
12114309--12114374	22	3.0	22	86	0	96	30	18	25	25	1.98
12114440--12114491	22	2.4	22	90	0	77	30	19	23	26	1.98
12114271--12114493	117	1.9	117	86	1	322	37	17	21	24	1.94
12114460--12114939	220	2.2	220	82	3	581	39	17	20	22	1.92
12114448--12114939	110	4.5	110	80	2	513	39	17	20	22	1.92
12114888--12114957	22	3.2	22	78	6	61	30	20	25	24	1.99
12115087--12115170	22	3.8	22	80	9	91	27	19	23	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12116619--12116651	12	2.8	12	86	4	50	6	9	0	84	0.76
12117666--12117691	11	2.4	11	100	0	52	0	7	0	92	0.39
12117665--12117716	18	2.9	18	78	10	54	3	9	1	84	0.82
12117666--12117716	27	1.9	26	84	4	66	3	7	1	86	0.77
12123425--12123513	34	2.7	34	79	16	91	35	0	3	60	1.13
12125474--12125562	33	2.6	35	81	15	114	28	4	13	53	1.59
12127733--12127775	20	2.2	19	83	4	50	58	2	11	27	1.46
12127890--12128003	57	2.0	57	94	3	203	34	10	9	45	1.71
12128500--12128548	18	2.7	18	82	14	57	30	20	2	46	1.62
12128622--12128647	13	2.0	13	100	0	52	30	23	7	38	1.83
12130335--12130403	14	4.7	15	76	16	65	18	1	5	73	1.10
12130317--12130371	19	2.9	19	81	10	60	20	3	5	70	1.22
12130470--12130556	34	2.6	32	79	15	88	24	4	13	57	1.55
12134454--12134496	21	2.0	22	86	4	61	34	6	9	48	1.62
12134697--12134744	25	1.9	25	82	0	60	25	31	2	41	1.67
12145420--12145450	13	2.4	13	94	0	53	29	0	0	70	0.87
12146483--12146527	3	15.3	3	90	4	74	66	0	2	31	1.04
12150758--12150801	21	2.1	21	100	0	88	13	13	38	34	1.84
12154764--12154797	17	2.0	17	100	0	68	23	11	23	41	1.87
12157418--12157576	78	2.0	78	87	2	230	45	21	10	22	1.82
12159301--12159332	6	5.7	6	92	7	50	0	0	9	90	0.45
12159299--12159332	16	2.1	16	94	0	59	0	0	8	91	0.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12159403--12159456	21	2.5	21	82	14	65	72	3	3	20	1.16
12159441--12159476	19	1.9	18	88	5	54	77	2	5	13	1.05
12160319--12160348	5	5.8	5	96	4	51	76	0	0	23	0.78
12162492--12162540	3	16.3	3	100	0	98	32	0	0	67	0.91
12163017--12163046	11	2.7	11	89	0	51	26	0	26	46	1.53
12163073--12163218	52	2.8	52	83	6	172	42	6	21	28	1.79
12163764--12163822	25	2.4	25	73	0	64	42	10	27	20	1.84
12164077--12164119	11	3.9	11	87	0	68	27	0	25	46	1.53
12164144--12164300	52	3.0	52	86	1	217	40	8	23	26	1.84
12165134--12165176	11	3.9	11	87	0	68	27	0	25	46	1.53
12165201--12165357	52	3.0	52	86	1	217	40	8	23	26	1.84
12169130--12169185	27	2.0	28	86	10	80	57	1	0	41	1.09
12169613--12169637	2	12.5	2	100	0	50	52	0	0	48	1.00
12169637--12169685	6	8.2	6	93	0	62	59	0	40	0	0.98
12169637--12169685	8	6.1	8	87	0	62	59	0	40	0	0.98
12169639--12169685	14	3.4	14	87	0	67	59	0	40	0	0.97
12170272--12170305	16	2.3	15	90	10	52	50	0	5	44	1.26
12170414--12170473	25	2.5	24	81	7	70	40	3	10	46	1.54
12173251--12173297	15	3.1	15	73	11	51	51	0	0	48	1.00
12176765--12176813	18	2.6	18	80	6	62	10	0	10	79	0.93
12177894--12177995	50	2.1	47	85	7	141	43	9	13	33	1.77
12177909--12178015	50	2.1	50	84	0	133	40	13	14	31	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12179046--12179089	20	2.1	21	87	4	63	25	4	11	59	1.51
12179046--12179089	19	2.2	21	84	8	56	25	4	11	59	1.51
12180453--12180506	1	54.0	1	81	0	54	1	7	1	88	0.64
12180455--12180506	9	5.8	9	86	4	70	1	7	1	88	0.66
12180835--12180877	20	2.3	19	88	8	61	16	6	4	72	1.24
12180841--12180883	20	2.2	20	86	0	59	18	4	6	69	1.29
12184037--12184085	19	2.6	19	100	0	98	51	10	16	22	1.74
12184369--12184431	22	2.9	21	80	7	63	22	3	1	73	1.07
12191728--12191818	40	2.3	40	86	5	123	31	9	12	46	1.74
12191900--12192140	78	3.2	78	88	6	343	25	10	21	41	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129