Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  12  of  129  ( 15449 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1755525--1755582
13
4.7
13
77
10
50
62
0
1
36
1.06
1755533--1755583
24
2.1
24
85
0
66
64
0
1
33
1.05
1755628--1755702
24
3.2
25
74
14
70
57
0
4
38
1.18
1755614--1755679
33
1.9
33
88
11
98
50
0
6
43
1.27
1755610--1755689
33
2.5
32
80
15
94
52
0
5
42
1.23
1755542--1755766
119
1.9
118
92
3
366
54
1
4
39
1.30
1756194--1756218
3
8.3
3
100
0
50
68
0
0
32
0.90
1759406--1759452
21
2.3
20
82
10
51
14
4
14
65
1.41
1761320--1761358
2
20.0
2
89
5
62
51
0
0
48
1.00
1761769--1761799
2
15.5
2
93
0
53
51
0
0
48
1.00
1765450--1765534
44
1.9
44
83
4
109
43
32
3
20
1.68
1766415--1766477
26
2.4
25
71
21
58
50
0
0
49
1.00
1775709--1775750
20
2.0
20
86
4
57
66
2
2
28
1.16
1778017--1778057
20
2.0
20
86
9
57
41
0
4
53
1.22
1783108--1783169
31
1.9
33
84
12
85
48
0
3
48
1.17
1783221--1783259
16
2.4
17
83
12
55
41
0
0
58
0.98
1783229--1783264
15
2.4
14
86
13
54
33
0
0
66
0.92
1784155--1784206
25
2.1
25
85
0
68
36
5
0
57
1.23
1789450--1789502
2
26.5
2
88
0
79
52
0
47
0
1.00
1791709--1791770
32
1.9
33
87
9
92
53
3
1
41
1.27
1803201--1803240
19
2.1
19
100
0
80
55
30
10
5
1.54
1806850--1806910
26
2.3
26
85
0
77
36
4
6
52
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1811209--1811244
4
8.8
4
87
6
54
19
2
0
77
0.88
1812829--1812856
12
2.3
12
100
0
56
21
0
14
64
1.29
1817082--1817187
52
2.0
52
92
0
176
31
17
29
21
1.97
1817913--1817942
2
15.0
2
92
0
51
46
0
3
50
1.18
1827140--1827196
30
1.9
30
85
0
78
45
0
1
52
1.11
1829766--1829869
53
2.0
50
87
9
147
39
14
12
33
1.84
1833301--1833343
15
2.9
15
75
25
54
44
0
2
53
1.13
1833323--1833386
26
2.6
24
73
17
60
43
1
1
53
1.19
1838771--1838835
34
1.9
33
84
3
85
40
0
1
58
1.07
1838800--1838843
12
3.7
12
81
6
54
34
0
4
61
1.16
1839466--1839496
2
15.0
2
93
6
53
48
0
3
48
1.17
1839512--1839548
11
3.4
11
84
0
56
48
0
0
51
1.00
1839652--1839687
19
1.9
19
88
5
56
30
0
0
69
0.89
1847659--1847726
26
2.5
27
81
11
77
33
2
10
52
1.50
1847819--1847860
20
2.0
21
86
13
61
38
7
4
50
1.51
1859832--1859858
2
13.5
2
100
0
54
51
0
0
48
1.00
1875810--1875853
21
2.1
21
95
0
79
45
25
13
15
1.83
1878249--1878293
14
3.3
14
78
15
58
35
4
0
60
1.17
1878250--1878303
27
2.0
26
82
3
63
40
3
0
55
1.17
1880648--1880725
37
2.1
37
97
0
147
29
30
3
35
1.75
1881144--1881173
13
2.3
13
94
0
51
63
0
0
36
0.95
1881424--1881451
1
28.0
1
100
0
56
100
0
0
0
0.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1881932--1881978
12
3.8
13
86
10
55
42
0
6
51
1.27
1881949--1881978
6
5.0
6
100
0
60
50
0
0
50
1.00
1882049--1882120
30
2.4
30
81
4
74
43
0
5
51
1.25
1882038--1882105
24
2.7
25
80
11
77
39
0
4
55
1.20
1890618--1890669
20
2.6
21
81
9
63
13
1
5
78
1.01
1890652--1890711
12
4.8
12
71
17
50
31
1
1
65
1.13
1890682--1890717
3
12.0
3
88
11
56
36
0
0
63
0.94
1891436--1891460
10
2.5
10
100
0
50
16
0
0
84
0.63
1891509--1891537
14
2.0
15
93
6
51
75
0
0
24
0.80
1891702--1891733
16
1.9
17
93
6
57
81
0
3
15
0.82
1893476--1893518
21
2.1
21
95
4
79
27
18
13
39
1.89
1895887--1896041
76
2.0
77
96
1
285
40
13
17
28
1.87
1897918--1898042
62
2.0
62
100
0
250
39
14
16
30
1.88
1901494--1901562
6
11.5
6
98
0
102
40
0
0
59
0.97
1909615--1909667
19
2.9
19
78
15
67
43
0
0
56
0.99
1909810--1909845
18
2.0
18
89
10
56
72
2
0
25
0.98
1914487--1915131
315
2.0
327
93
4
1109
27
13
24
34
1.93
1923354--1923414
19
3.1
20
78
15
65
42
0
0
57
0.98
1923399--1923436
12
3.3
12
82
14
53
34
2
0
63
1.09
1923279--1923435
22
6.9
23
67
24
77
45
0
1
52
1.13
1924651--1924689
17
2.2
18
86
4
53
58
17
7
15
1.59
1928969--1929157
96
2.0
96
89
2
290
39
15
12
31
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1931258--1931285
14
2.0
14
100
0
56
21
0
21
57
1.41
1935523--1935555
11
2.8
12
90
9
50
63
0
3
33
1.10
1935518--1935560
13
3.5
13
81
12
54
60
2
6
30
1.35
1935976--1936015
2
20.0
2
100
0
80
0
50
0
50
1.00
1936538--1936571
17
2.0
17
88
0
50
35
0
23
41
1.55
1936660--1936704
25
1.9
23
86
13
65
68
0
4
26
1.08
1937368--1937410
14
3.0
14
82
3
50
46
0
0
53
1.00
1940304--1940350
21
2.1
22
84
7
60
19
4
6
70
1.26
1946554--1946580
6
4.5
6
100
0
54
14
0
66
18
1.25
1947893--1948039
73
2.0
74
88
6
219
33
13
13
39
1.84
1950118--1950489
123
3.0
123
90
2
546
17
8
52
20
1.71
1950463--1950522
21
2.9
21
73
14
52
18
5
56
20
1.59
1950509--1950555
3
15.7
3
81
0
58
4
2
65
27
1.22
1950149--1950540
129
3.1
126
84
5
479
16
8
54
21
1.68
1965850--1965889
19
2.1
19
90
0
62
30
2
27
40
1.70
1966290--1966350
31
2.0
31
96
0
113
37
18
3
40
1.67
1968611--1968640
14
2.1
14
93
0
51
76
0
0
23
0.78
1972190--1972262
27
2.7
27
77
10
78
58
5
0
35
1.21
1977704--1977786
33
2.5
31
81
11
78
40
1
1
56
1.15
1978471--1978512
19
2.2
20
82
4
50
42
4
0
52
1.22
1979074--1979130
17
3.2
17
76
13
62
31
3
1
63
1.22
1979059--1979130
36
2.0
37
86
8
103
31
5
2
59
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1980310--1980475
82
2.0
82
100
0
332
27
12
22
38
1.89
1987084--1987474
117
3.3
115
86
6
513
36
12
6
44
1.69
1987083--1987474
60
6.7
58
82
7
481
35
12
6
44
1.70
1987503--1987598
17
5.9
16
74
17
74
78
3
5
13
1.05
1987526--1987599
6
12.5
6
73
18
66
81
1
4
13
0.91
1987491--1987587
48
2.0
47
84
9
126
78
3
5
13
1.04
1987501--1987598
5
19.4
5
72
17
62
78
3
5
13
1.03
1987530--1987591
11
5.9
10
75
16
54
82
1
3
12
0.87
1988485--1988559
21
3.4
21
74
15
80
68
9
6
16
1.38
1988576--1988705
66
2.0
66
81
3
154
66
5
5
22
1.32
1988708--1988767
6
9.5
6
77
10
50
78
3
1
16
0.97
1988706--1988768
11
5.6
11
73
17
58
76
3
1
19
1.01
1988725--1988786
27
2.3
27
83
8
72
77
3
6
12
1.08
1989038--1989387
83
4.2
84
83
2
404
38
22
14
24
1.91
1989039--1989387
42
8.4
42
86
1
436
38
22
14
24
1.92
1989038--1989369
125
2.7
125
87
2
452
38
22
14
24
1.91
1990646--1990686
21
2.0
21
90
0
64
0
12
0
87
0.53
1990654--1990686
10
3.2
10
91
8
57
0
9
0
90
0.44
1990657--1990688
11
2.9
11
100
0
64
0
9
0
90
0.45
1990676--1990708
17
1.9
17
100
0
66
9
12
0
78
0.95
1990638--1990691
11
4.9
11
82
8
56
3
14
0
81
0.82
1990665--1990721
28
2.0
28
86
0
78
10
14
0
75
1.05
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1994701--1994735
19
1.9
18
88
11
54
42
0
11
45
1.40
1994599--1994997
60
6.7
58
81
8
414
35
11
7
45
1.68
1994599--1994996
118
3.4
117
81
9
461
35
11
7
45
1.68
1995030--1995116
6
14.7
6
71
20
58
78
1
5
14
1.00
1995019--1995116
17
5.4
18
73
17
87
77
2
5
15
1.03
1995022--1995115
5
18.4
5
73
18
70
77
2
5
14
1.04
1995139--1995185
4
11.8
4
83
0
58
78
4
0
17
0.90
1995142--1995200
8
7.5
8
75
11
50
79
5
0
15
0.89
1995139--1995184
12
3.8
12
91
0
74
80
4
0
15
0.86
1995529--1995566
19
2.0
19
89
0
58
18
18
26
36
1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129