Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  28  of  129  ( 15449 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5756518--5756547
12
2.5
12
94
0
51
33
0
0
66
0.92
5757433--5757485
11
4.7
11
74
4
52
66
5
0
28
1.15
5766389--5766415
11
2.5
11
100
0
54
59
11
7
22
1.56
5769219--5769258
20
2.0
20
95
0
71
32
30
17
20
1.95
5770448--5770477
13
2.2
14
94
5
53
60
0
0
40
0.97
5775866--5776030
82
2.0
82
97
0
312
30
9
8
50
1.65
5783309--5783346
5
7.6
5
82
11
51
34
0
0
65
0.93
5783383--5783501
59
2.1
59
87
6
172
57
2
1
37
1.22
5784034--5784093
22
2.7
23
70
17
63
35
3
8
53
1.48
5795986--5796043
27
2.1
27
84
6
73
32
1
3
62
1.22
5796072--5796135
28
2.2
30
81
13
80
53
3
3
40
1.33
5806060--5806094
16
2.1
17
94
5
63
11
5
0
82
0.82
5806049--5806097
22
2.3
22
86
10
66
16
6
0
77
0.96
5806157--5806187
2
15.5
2
100
0
62
48
0
0
51
1.00
5806910--5806943
15
2.1
16
89
10
52
8
5
0
85
0.75
5807029--5807071
22
2.0
22
90
9
70
30
2
0
67
1.03
5808087--5808122
14
2.6
15
87
12
51
86
0
2
11
0.68
5811112--5811176
32
2.0
32
85
5
87
44
20
12
23
1.84
5814720--5814753
15
2.3
15
90
10
52
67
5
0
26
1.13
5816025--5816086
31
2.0
30
84
3
79
41
8
3
46
1.49
5816159--5816192
14
2.4
14
95
0
59
76
0
5
17
0.98
5818764--5818817
23
2.3
24
78
12
58
38
1
0
59
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5827470--5827533
33
2.1
31
82
11
78
23
6
20
50
1.71
5831116--5831494
187
2.0
187
99
0
749
27
25
16
30
1.97
5831545--5831579
18
1.9
18
100
0
70
28
17
22
31
1.96
5832016--5832046
14
2.1
15
94
5
55
41
0
0
58
0.98
5834720--5834747
2
14.0
2
100
0
56
50
0
0
50
1.00
5835457--5835575
36
3.1
35
67
19
85
41
1
4
52
1.30
5835441--5835599
79
2.0
82
90
3
252
42
1
3
52
1.25
5835570--5835608
3
13.0
3
100
0
78
33
0
0
66
0.92
5835707--5835772
33
2.0
33
85
8
91
51
0
6
42
1.26
5853110--5853140
3
10.3
3
100
0
62
32
0
35
32
1.58
5876607--5876641
15
2.3
15
95
0
61
17
37
11
34
1.85
5884629--5885111
242
2.0
241
93
1
815
29
13
23
33
1.93
5886830--5886887
27
2.2
26
87
3
80
37
3
0
58
1.15
5900848--5900885
2
19.5
2
83
5
51
55
0
0
44
0.99
5900849--5900901
10
5.2
10
84
9
63
56
1
0
41
1.10
5900840--5900901
29
2.1
30
82
14
76
54
1
1
41
1.19
5904140--5904188
5
10.0
5
82
12
66
77
2
2
18
0.96
5904140--5904188
9
5.0
10
82
12
66
77
2
2
18
0.96
5904139--5904188
24
2.1
24
88
7
75
76
2
2
20
0.99
5907572--5907611
14
2.8
14
92
3
62
50
5
0
45
1.23
5907835--5907884
25
2.1
23
85
7
64
38
18
8
36
1.80
5909063--5909116
17
3.2
17
78
7
65
77
1
1
18
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5909866--5909943
6
13.2
6
87
5
61
75
1
0
23
0.87
5909877--5909910
9
4.0
8
96
3
50
82
0
0
17
0.67
5909888--5909946
3
19.7
3
92
0
100
71
0
0
28
0.87
5909866--5909946
12
6.8
12
87
8
85
75
1
0
23
0.88
5909951--5910002
21
2.5
21
90
3
79
48
3
9
38
1.54
5909908--5910002
21
4.2
22
80
10
70
54
2
7
35
1.40
5909961--5910002
16
2.7
16
88
3
59
50
4
7
38
1.51
5910522--5910739
120
1.8
120
80
2
267
45
11
20
22
1.82
5910722--5910885
66
2.5
66
85
0
211
43
11
23
20
1.85
5910863--5911164
121
2.5
121
80
2
347
44
10
22
22
1.83
5911901--5911943
18
2.4
18
88
7
61
0
16
2
81
0.79
5918584--5918681
5
18.8
5
80
17
103
80
2
0
17
0.80
5918589--5918682
7
13.4
7
70
22
56
80
2
0
17
0.80
5918589--5918692
34
3.1
33
89
9
133
80
1
0
16
0.85
5918582--5918689
6
19.0
6
85
12
108
79
1
0
17
0.87
5918970--5918994
12
2.1
12
100
0
50
48
8
8
36
1.62
5919491--5919531
3
13.7
3
100
0
82
68
0
0
31
0.90
5919495--5919696
5
39.2
5
73
11
92
53
2
8
35
1.44
5919553--5919619
21
3.1
21
85
6
82
50
2
8
37
1.49
5919631--5919707
8
9.1
8
68
20
50
51
1
10
36
1.44
5921802--5921835
6
5.7
6
89
0
50
67
0
20
11
1.21
5922098--5922147
23
2.2
22
82
10
57
40
6
0
54
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5923269--5923315
8
5.8
8
76
14
51
70
0
2
27
0.99
5923266--5923315
26
2.0
26
88
4
75
68
0
2
30
1.01
5923338--5923375
16
2.4
16
90
0
58
65
13
15
5
1.43
5926989--5927030
16
2.6
17
85
11
61
42
9
0
47
1.36
5928861--5928889
2
14.5
2
100
0
58
51
0
0
48
1.00
5930474--5930535
21
2.8
23
81
16
69
54
11
4
29
1.56
5930505--5930552
21
2.3
21
82
7
53
52
12
10
25
1.71
5931108--5931146
20
2.0
20
94
0
69
56
17
5
20
1.60
5932726--5932889
44
3.7
44
77
10
154
42
12
10
34
1.78
5932891--5932964
22
3.3
21
74
10
58
40
17
5
36
1.73
5932949--5933017
22
3.2
21
73
6
66
43
20
5
30
1.75
5938949--5939068
42
2.9
43
83
12
139
54
12
5
27
1.61
5939114--5939152
14
2.9
14
85
14
55
76
10
0
12
1.01
5944359--5944397
20
2.0
20
85
10
53
28
2
2
66
1.18
5944395--5944436
18
2.3
19
87
4
59
54
0
4
40
1.21
5944404--5944446
22
1.9
23
85
4
61
55
0
6
37
1.27
5944544--5944578
18
1.9
18
94
0
61
48
0
0
51
1.00
5944552--5944675
26
4.4
27
75
20
110
58
0
0
41
1.04
5944553--5944621
23
3.1
23
82
12
74
59
0
0
40
0.97
5944551--5944667
52
2.2
53
81
13
136
56
0
0
43
0.99
5944614--5944664
16
3.3
16
76
18
63
58
0
0
41
0.98
5944754--5944787
16
2.2
16
89
5
52
47
0
0
52
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5961197--5961289
3
31.3
3
75
14
61
25
3
3
67
1.20
5961253--5961298
24
2.0
23
91
4
74
26
4
0
69
1.07
5961986--5962031
3
15.7
3
95
4
85
30
0
0
69
0.89
5962058--5962097
21
2.0
20
90
5
62
7
2
5
85
0.83
5962065--5962098
9
3.7
9
84
7
50
8
2
2
85
0.80
5962102--5962233
56
2.3
57
84
8
162
50
4
9
36
1.55
5962125--5962233
56
1.9
58
88
7
170
50
4
11
33
1.58
5962240--5962365
59
2.1
59
82
5
148
47
4
12
34
1.63
5962240--5962375
58
2.3
57
80
9
141
47
5
12
35
1.64
5962142--5962482
132
2.6
130
90
1
540
47
5
12
34
1.66
5962299--5962443
73
2.0
73
85
6
195
49
5
11
33
1.61
5962372--5962481
57
1.9
58
83
5
143
50
6
12
30
1.65
5962546--5962592
24
2.0
24
88
8
71
17
4
2
76
1.04
5972874--5972918
8
5.8
8
81
5
56
86
2
4
6
0.76
5972873--5972918
22
2.1
21
88
8
65
86
2
4
6
0.75
5973628--5973658
16
1.9
16
93
0
53
22
16
19
41
1.89
5973929--5974030
44
2.3
43
82
11
111
30
7
13
48
1.71
5974088--5974474
43
8.9
43
84
4
456
22
15
20
41
1.90
5974042--5974474
86
5.0
86
85
4
430
22
15
19
42
1.89
5974673--5974831
9
17.2
9
70
26
54
23
3
1
70
1.14
5974728--5974806
3
25.3
3
82
12
97
29
3
0
67
1.08
5974668--5974783
61
1.9
61
82
10
148
23
4
1
70
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5974728--5974821
36
2.6
36
88
9
131
27
4
0
68
1.08
5975572--5975603
3
10.7
3
100
0
64
31
0
0
68
0.90
5975686--5975811
63
2.0
63
85
11
170
51
3
7
36
1.50
5975789--5976004
73
3.0
72
87
4
290
48
6
11
34
1.64
5976177--5976210
13
2.6
13
90
9
52
20
2
0
76
0.92
5977002--5977033
3
10.7
3
100
0
64
65
0
0
34
0.93
5978393--5978473
41
2.0
41
97
0
153
51
3
9
34
1.53
5979041--5979069
6
5.0
6
95
4
51
68
0
31
0
0.89
5979437--5979483
16
2.8
17
78
18
53
25
2
0
72
0.96
5979505--5979592
26
3.2
26
69
17
70
53
2
7
36
1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129