genome.fa.s13.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  61  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11820205--11820269	20	3.1	20	82	13	78	80	4	0	15	0.88
11820461--11820513	6	9.5	6	82	15	53	1	0	13	84	0.69
11820458--11820516	5	12.4	5	80	8	54	1	0	13	84	0.69
11820463--11820513	22	2.4	22	81	12	63	1	0	13	84	0.71
11820458--11820516	15	4.1	15	80	8	61	1	0	13	84	0.69
11820475--11820516	20	2.1	20	90	0	66	2	0	14	83	0.75
11820532--11820851	41	7.4	41	79	9	302	39	20	16	23	1.92
11820532--11820851	83	3.7	84	80	8	317	39	20	16	23	1.92
11821935--11822190	63	3.8	63	69	20	178	29	22	10	37	1.87
11822028--11822061	17	2.0	17	100	0	68	23	17	23	35	1.95
11821968--11822124	80	2.0	80	96	0	287	29	22	10	36	1.88
11822045--11822202	63	2.5	64	91	2	257	27	24	11	36	1.90
11822892--11822974	10	8.3	10	70	19	50	8	14	1	75	1.08
11822929--11822974	22	2.1	22	88	8	67	8	10	0	80	0.91
11827003--11827147	59	2.4	60	93	2	247	40	13	4	41	1.66
11828497--11828535	18	2.2	18	90	9	62	69	7	5	17	1.32
11828515--11828571	24	2.4	24	79	5	62	77	5	3	14	1.08
11828543--11828572	14	2.1	14	100	0	60	86	0	0	13	0.57
11829805--11829839	18	1.9	18	88	0	52	42	5	0	51	1.25
11833012--11833079	31	2.3	31	82	10	79	61	2	2	32	1.26
11839459--11839528	34	2.0	35	88	2	106	42	27	4	25	1.73
11843313--11843378	33	2.1	30	83	8	78	50	0	3	46	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11843331--11843378	17	3.0	17	79	11	57	52	0	2	45	1.12
11845654--11845708	22	2.5	22	87	0	74	49	3	10	36	1.56
11845847--11845931	22	3.9	22	82	0	89	43	4	11	40	1.62
11845847--11845931	44	1.9	44	83	4	109	43	4	11	40	1.62
11845871--11846001	22	6.2	21	67	15	56	48	3	9	38	1.53
11845960--11846032	22	3.3	21	75	7	65	47	4	12	35	1.60
11846307--11846434	22	5.9	21	78	9	96	51	7	5	35	1.54
11846343--11846454	22	5.1	22	75	10	95	48	5	8	37	1.58
11846612--11846679	22	3.1	23	76	17	74	47	5	7	39	1.56
11846712--11846782	22	3.2	22	78	11	74	46	9	7	36	1.64
11847132--11847172	11	3.7	11	86	0	55	56	2	2	39	1.26
11847108--11847408	22	13.5	22	68	14	93	48	6	7	37	1.57
11847334--11847428	44	2.2	44	82	3	111	44	6	9	40	1.62
11847487--11847535	22	2.2	22	78	7	55	51	8	14	26	1.70
11847521--11847616	22	4.4	22	73	12	81	40	7	12	39	1.71
11847590--11847646	30	1.9	30	85	7	80	40	5	12	42	1.65
11847649--11847690	22	1.9	22	85	0	57	54	7	4	33	1.49
11847695--11847816	44	2.8	43	78	13	133	43	7	9	39	1.66
11847699--11847842	66	2.2	65	79	8	159	41	7	11	39	1.69
11847695--11847876	22	8.3	22	72	4	100	43	7	10	39	1.66
11848223--11848296	21	3.5	20	77	14	78	41	12	10	35	1.77
11848218--11848314	42	2.3	42	80	3	106	46	11	9	32	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11848218--11848314	21	4.6	21	72	0	77	46	11	9	32	1.72
11848291--11848341	26	2.0	26	96	0	93	54	7	3	33	1.47
11851603--11851629	5	5.4	5	100	0	54	40	0	0	59	0.98
11853852--11854008	49	3.2	49	91	5	237	42	20	8	29	1.81
11853735--11854007	149	1.8	149	79	7	322	39	17	12	30	1.87
11858180--11858222	17	2.6	16	85	3	59	6	32	20	39	1.80
11860256--11860319	26	2.5	26	82	5	76	21	17	18	42	1.89
11860385--11860416	15	2.1	15	94	0	55	25	9	25	40	1.85
11860627--11860995	100	3.7	98	76	8	282	39	13	10	36	1.80
11860668--11861177	50	10.4	51	70	10	251	39	14	10	35	1.81
11861721--11861763	12	3.5	12	78	15	52	2	16	0	81	0.79
11861721--11861771	25	2.1	24	85	3	66	5	15	1	76	1.07
11862405--11862431	8	3.4	8	100	0	54	11	0	0	88	0.50
11868988--11869601	304	2.0	304	98	0	1174	30	16	16	35	1.92
11873321--11873382	22	2.7	22	80	11	70	59	11	3	25	1.46
11873321--11873392	12	6.1	12	70	15	51	59	12	2	25	1.46
11873632--11873697	7	10.0	7	76	12	59	80	6	1	12	0.96
11873633--11873688	6	8.7	6	81	13	51	80	7	0	12	0.90
11873639--11873697	13	4.5	13	73	23	52	79	6	1	11	0.99
11873633--11873697	33	2.0	33	84	6	87	80	6	1	12	0.97
11880582--11880644	19	3.3	19	71	20	60	49	3	0	47	1.17
11880723--11880768	17	2.8	17	74	16	51	54	6	0	39	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11880715--11880770	16	3.6	15	77	13	60	53	5	0	41	1.24
11882519--11882564	22	2.0	23	87	4	67	30	6	2	60	1.34
11901908--11901963	15	4.0	14	73	15	53	55	1	1	41	1.21
11904557--11904593	19	1.9	19	88	0	56	48	5	0	45	1.25
11908384--11908447	27	2.3	28	83	2	76	39	0	4	56	1.20
11908845--11908893	25	2.0	24	84	4	62	55	0	2	42	1.11
11910150--11910191	22	1.9	22	85	9	59	59	0	0	40	0.97
11911446--11911471	13	2.0	13	100	0	52	23	0	0	76	0.78
11913199--11913237	18	2.2	18	86	4	53	12	2	7	76	1.09
11914255--11914517	143	1.8	144	79	5	309	36	12	12	38	1.81
11914551--11914808	144	1.8	142	80	4	304	32	8	12	46	1.71
11916222--11916267	24	1.9	24	90	0	74	43	36	2	17	1.61
11916308--11916358	12	4.0	12	84	7	57	49	23	3	23	1.67
11918570--11918646	38	2.0	38	87	0	109	41	15	9	33	1.79
11923645--11923693	24	2.0	24	84	7	64	57	0	2	40	1.10
11925709--11925747	20	1.9	20	89	5	60	74	2	12	10	1.17
11926931--11927002	11	6.5	10	78	13	54	80	2	11	5	0.98
11926928--11927006	16	4.8	16	73	16	63	81	2	11	5	0.96
11926974--11927006	11	2.8	12	86	9	50	81	0	18	0	0.68
11927346--11927386	19	2.2	19	90	0	64	85	0	14	0	0.60
11927357--11927385	11	2.7	11	94	5	51	82	0	17	0	0.66
11928151--11928188	20	1.9	20	88	0	58	23	18	15	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11928471--11928642	41	4.1	42	80	11	185	31	16	11	40	1.84
11928499--11928642	41	3.5	40	85	8	191	32	15	11	40	1.83
11928471--11928642	83	2.1	83	86	4	240	31	16	11	40	1.84
11928499--11928730	83	2.7	84	79	11	238	32	14	12	41	1.82
11928689--11928767	41	2.0	40	87	2	113	31	16	11	40	1.84
11928863--11928903	18	2.3	18	100	0	82	34	17	17	31	1.93
11928825--11928956	69	1.9	69	84	7	180	31	18	16	34	1.93
11928825--11928956	68	1.9	68	84	7	178	31	18	16	34	1.93
11928993--11929160	51	3.3	51	77	4	178	28	16	17	36	1.92
11928975--11929158	102	1.8	100	84	2	251	29	18	17	34	1.94
11929128--11929200	20	3.6	19	72	15	56	19	9	26	45	1.80
11929144--11929211	22	3.2	21	70	8	57	19	13	22	45	1.84
11929023--11929307	144	2.0	144	82	6	355	27	17	17	37	1.92
11929269--11929314	20	2.2	20	88	3	65	19	15	19	45	1.85
11929277--11929497	51	4.1	51	65	19	126	27	17	17	37	1.93
11929440--11929478	20	2.0	20	94	0	69	17	20	20	41	1.91
11929277--11929677	164	2.4	164	93	0	676	28	17	17	36	1.93
11929604--11929643	21	2.0	21	90	5	64	17	22	20	40	1.92
11929553--11929650	51	1.9	51	85	4	135	25	17	17	39	1.91
11929624--11929734	31	3.6	31	81	3	125	32	21	10	35	1.88
11929277--11929758	164	2.9	163	88	4	571	28	18	16	36	1.93
11929760--11929801	20	2.1	20	90	0	66	28	23	11	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11932305--11932350	14	3.1	14	79	11	56	43	26	6	23	1.78
11932338--11932387	24	2.1	24	84	0	64	46	34	0	20	1.51
11932434--11932517	21	4.1	21	76	11	77	51	29	1	17	1.53
11932453--11932537	28	3.0	29	80	10	97	48	31	2	17	1.60
11936684--11936722	20	2.0	20	89	0	60	76	0	15	7	0.99
11937967--11938072	22	4.8	22	79	6	117	23	11	32	33	1.90
11937969--11938096	66	1.9	66	84	6	170	23	11	31	33	1.91
11937973--11938112	66	2.1	66	80	7	151	25	12	27	33	1.93
11941382--11941415	6	5.7	6	86	13	52	0	14	0	85	0.60
11946293--11946346	24	2.4	24	85	14	71	33	3	14	48	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129