genome.fa.s13.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  96  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17219577--17219626	23	2.2	22	82	3	64	66	8	2	24	1.29
17221033--17221089	26	2.2	25	87	12	80	17	3	35	43	1.66
17221106--17221143	20	1.9	20	88	0	58	15	2	34	47	1.60
17221023--17221170	27	5.7	25	74	20	101	18	2	35	43	1.61
17223343--17223379	15	2.2	17	86	13	51	59	18	5	16	1.55
17223357--17223401	21	2.1	22	91	4	74	68	13	4	13	1.35
17223343--17223397	18	2.9	18	78	19	58	61	18	5	14	1.51
17224234--17224312	41	2.0	38	80	14	88	67	8	11	12	1.43
17224449--17224485	16	2.2	16	90	4	56	67	8	10	13	1.41
17224449--17224486	17	2.2	17	86	9	51	68	7	10	13	1.39
17224838--17224969	57	2.3	57	96	1	237	20	17	15	46	1.83
17225296--17225339	3	14.0	3	90	9	70	65	0	0	34	0.93
17230084--17230230	22	6.7	22	73	4	93	32	19	19	28	1.96
17230080--17230219	65	2.1	66	81	6	160	32	19	19	28	1.96
17230387--17230516	32	4.0	32	82	5	154	37	17	16	27	1.92
17230387--17230514	65	2.0	65	85	0	175	38	16	17	28	1.91
17230797--17230836	14	2.9	14	84	0	53	80	2	7	10	1.00
17232969--17233358	198	2.0	197	94	1	683	43	10	10	35	1.74
17235470--17235508	20	2.0	20	94	0	69	2	17	20	58	1.50
17236344--17236377	14	2.4	14	95	0	59	44	23	8	23	1.81
17239680--17239706	12	2.2	12	100	0	54	37	0	18	44	1.50
17242021--17242069	19	2.6	19	81	12	57	83	10	4	2	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17242312--17242382	37	1.9	37	88	0	106	30	21	11	36	1.88
17245984--17246101	14	8.6	14	73	20	90	79	2	15	2	0.94
17245990--17246043	18	2.9	18	91	2	81	81	0	18	0	0.69
17245984--17246095	29	3.9	28	79	12	104	79	2	15	2	0.96
17246206--17246249	19	2.3	19	80	0	52	77	4	9	9	1.12
17246214--17246255	21	2.0	20	86	4	57	61	9	9	19	1.53
17246570--17246654	17	4.9	16	75	15	64	75	2	16	5	1.10
17246614--17246642	12	2.3	13	94	5	51	82	0	17	0	0.66
17247819--17247845	14	1.9	14	100	0	54	22	14	18	44	1.86
17248592--17248678	41	2.1	41	82	2	104	40	16	10	33	1.82
17248516--17248889	40	9.3	40	73	7	193	36	13	12	37	1.82
17248636--17248886	80	3.1	79	79	5	227	35	11	13	39	1.80
17249091--17249559	22	21.4	21	75	9	264	36	25	10	27	1.89
17249090--17249644	22	25.3	22	73	11	248	36	24	11	27	1.90
17249090--17249629	44	12.3	44	73	7	355	36	24	11	27	1.90
17251840--17251936	29	3.4	28	84	4	104	47	28	4	19	1.68
17251840--17251964	29	4.4	28	80	6	99	45	29	4	20	1.69
17251924--17251985	21	2.9	21	81	11	63	43	29	3	24	1.70
17255463--17255490	12	2.3	12	100	0	56	46	17	14	21	1.84
17257221--17257273	17	3.0	17	94	5	88	28	18	28	24	1.98
17262384--17262452	21	2.9	25	65	32	60	42	2	23	31	1.69
17269114--17269138	10	2.5	10	100	0	50	12	36	0	52	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17269136--17269179	21	2.1	21	83	8	54	22	22	6	47	1.75
17270870--17271107	117	2.0	117	86	4	329	39	10	20	30	1.85
17271691--17271733	21	2.0	21	95	0	77	9	13	11	65	1.48
17271763--17274215	905	2.7	900	84	3	3149	34	16	12	36	1.86
17274184--17274240	25	2.3	25	100	0	114	45	12	12	29	1.78
17276341--17276424	35	2.5	33	79	11	91	79	4	10	4	1.02
17276391--17276425	18	1.9	18	88	0	52	77	5	11	5	1.12
17277051--17277098	21	2.5	19	78	15	53	54	0	20	25	1.45
17277523--17277568	18	2.5	18	85	3	56	63	13	2	21	1.40
17277594--17278609	49	20.4	49	76	8	706	31	14	11	42	1.82
17277597--17278535	99	9.5	96	77	8	691	31	14	11	41	1.82
17277610--17278442	145	5.6	148	75	11	529	31	14	12	42	1.82
17280820--17280913	19	4.9	20	70	10	63	42	39	3	14	1.62
17280926--17280975	7	7.5	6	81	18	55	48	32	0	20	1.50
17280932--17281017	27	3.2	27	76	5	84	44	39	0	16	1.48
17280952--17281015	33	1.9	33	83	0	83	45	40	0	14	1.44
17284488--17284588	53	1.9	53	89	0	157	35	9	9	44	1.71
17290076--17290100	13	1.9	13	100	0	50	84	0	8	8	0.79
17290237--17290273	15	2.3	17	81	13	51	78	0	13	8	0.96
17290483--17290532	24	2.1	24	92	0	82	34	12	0	54	1.38
17290803--17290833	10	2.9	11	90	9	55	58	0	0	41	0.98
17290803--17290852	21	2.3	22	83	10	59	52	2	2	44	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17293973--17293997	13	1.9	13	100	0	50	0	4	0	96	0.24
17293972--17293998	14	1.9	14	100	0	54	0	3	0	96	0.23
17294548--17296111	261	6.0	261	98	0	3053	29	13	19	37	1.91
17294548--17296111	521	3.0	522	99	0	3071	29	13	19	37	1.91
17298894--17298941	16	3.0	16	87	6	71	39	12	16	31	1.86
17299990--17300052	31	2.0	31	84	0	81	42	6	6	44	1.55
17304030--17304310	143	2.0	143	92	1	474	30	22	15	32	1.94
17304659--17304706	23	2.1	23	81	11	55	14	12	0	72	1.11
17304668--17304711	23	1.9	23	86	9	63	9	9	0	81	0.87
17305200--17305311	13	8.6	13	72	17	74	18	0	34	45	1.56
17305205--17305279	26	2.8	26	80	13	91	17	1	34	46	1.56
17305200--17305330	7	20.1	7	71	12	84	18	0	35	45	1.55
17305209--17305341	65	2.0	65	82	5	162	18	0	34	45	1.55
17307639--17307694	21	2.7	20	72	8	58	26	10	14	48	1.76
17308041--17308143	49	2.1	50	87	1	145	45	11	17	25	1.82
17311826--17312150	174	1.9	174	84	2	438	18	9	25	46	1.79
17315564--17315603	17	2.4	17	86	0	53	35	15	20	30	1.93
17316967--17317110	20	6.8	21	74	8	78	43	15	7	32	1.76
17317122--17317205	37	2.3	38	82	14	104	47	11	11	28	1.76
17317144--17317205	18	3.3	18	82	10	72	48	11	12	27	1.76
17317125--17317198	11	7.8	10	69	26	54	48	12	12	27	1.76
17317153--17317201	19	2.7	18	90	3	71	53	10	12	24	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17318744--17318779	19	1.9	19	94	5	65	16	5	11	66	1.40
17318845--17318877	15	2.2	15	94	0	57	18	9	6	66	1.40
17324087--17324665	130	4.5	129	79	8	581	48	8	7	36	1.62
17329464--17329686	113	2.0	112	88	0	329	43	14	9	32	1.78
17336215--17336279	30	2.2	28	81	5	76	36	29	12	21	1.90
17337198--17337331	69	1.9	70	90	4	218	32	14	17	34	1.91
17338781--17338824	22	2.0	21	86	4	61	29	9	27	34	1.87
17344662--17344706	21	2.1	21	83	0	54	28	17	20	33	1.95
17347129--17347263	72	1.9	70	86	3	189	40	3	13	42	1.62
17347130--17347278	72	2.1	70	82	5	174	40	4	12	42	1.62
17347639--17347678	21	2.0	20	90	5	62	27	12	15	45	1.82
17351447--17351482	2	18.0	2	100	0	72	50	0	0	50	1.00
17357958--17357999	17	2.5	17	80	7	50	78	0	4	16	0.91
17358557--17358601	15	2.9	16	83	9	58	51	8	6	33	1.59
17358558--17358605	16	3.1	16	79	11	55	52	10	4	33	1.55
17362220--17362246	3	9.0	3	100	0	54	66	33	0	0	0.92
17365711--17365787	28	3.0	24	71	17	64	7	10	3	77	1.09
17367207--17367249	21	2.1	20	86	4	59	41	0	2	55	1.12
17371279--17371308	15	2.0	15	93	0	51	60	16	0	23	1.36
17377339--17377568	109	2.1	109	100	0	460	15	9	29	45	1.77
17377376--17377550	52	3.3	52	65	10	145	16	8	29	46	1.75
17377529--17377578	20	2.5	20	87	6	66	12	20	28	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17377548--17377601	19	2.7	19	88	5	72	12	20	22	44	1.85
17377620--17377663	22	2.0	22	86	4	63	25	13	20	40	1.89
17377809--17377852	22	2.0	23	81	4	54	34	2	0	63	1.07
17379907--17379966	27	2.2	27	82	14	70	6	5	8	80	1.03
17379925--17379966	14	3.0	14	89	10	68	7	7	7	78	1.09
17379949--17380021	27	2.8	25	82	15	85	2	4	13	79	0.99
17379938--17380018	33	2.5	32	78	11	85	3	4	12	79	1.03
17380310--17380340	9	3.4	9	95	0	53	32	25	12	29	1.93
17381693--17381726	12	2.8	12	95	0	59	26	2	23	47	1.66
17382139--17382844	143	4.9	144	82	5	773	33	13	12	40	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129