genome.fa.s13.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  101  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18324209--18324331	62	2.0	62	85	6	169	34	16	8	40	1.79
18328111--18328180	35	2.0	35	82	0	86	34	17	12	35	1.88
18328969--18329528	287	2.0	287	90	0	897	37	17	14	30	1.90
18329636--18329766	63	2.1	61	81	5	147	33	16	12	37	1.86
18330224--18330256	8	4.1	8	88	11	50	12	0	3	84	0.72
18330589--18330632	23	1.9	23	85	0	61	40	34	6	18	1.77
18331576--18331608	14	2.2	16	89	10	52	36	0	0	63	0.95
18331777--18331802	2	13.0	2	100	0	52	50	0	0	50	1.00
18336923--18336968	21	2.2	21	96	0	83	56	19	0	23	1.42
18337552--18337700	80	1.9	80	86	0	217	40	19	6	33	1.78
18337644--18338139	259	1.9	260	86	0	715	40	20	7	31	1.79
18340651--18340801	50	3.1	50	75	12	143	56	6	10	25	1.57
18340644--18340815	50	3.5	47	76	15	127	56	6	10	26	1.57
18345112--18345158	16	2.9	16	84	6	51	19	8	4	68	1.33
18356914--18357037	43	2.9	43	82	7	162	31	12	12	42	1.81
18358442--18358508	4	17.0	4	76	11	59	19	5	1	73	1.12
18358454--18358508	16	3.4	16	80	12	67	21	5	1	70	1.16
18358455--18358508	20	2.7	20	80	13	74	22	5	1	70	1.18
18361689--18361739	17	3.1	17	77	11	61	56	15	3	23	1.56
18363183--18363233	18	2.8	18	87	3	75	17	3	7	70	1.27
18364040--18364069	15	2.1	14	93	6	51	83	6	6	3	0.90
18369054--18369096	11	3.9	11	75	0	50	39	2	4	53	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18369060--18369103	22	2.0	22	90	0	70	40	4	9	45	1.56
18369329--18369381	27	2.0	27	84	0	70	33	5	0	60	1.20
18375845--18376120	119	2.3	124	89	3	418	47	17	6	28	1.72
18378637--18378699	28	2.2	29	86	8	85	39	3	0	57	1.15
18379418--18379464	23	2.0	24	87	4	69	53	0	4	42	1.20
18379569--18379610	15	2.9	14	83	13	50	42	2	2	52	1.27
18381115--18381173	29	2.0	29	83	0	73	50	5	1	42	1.34
18385580--18385854	137	2.0	138	87	2	401	46	8	6	38	1.58
18386768--18386820	27	2.0	26	88	3	79	54	0	9	35	1.33
18387516--18387553	17	2.2	18	85	4	51	57	0	10	31	1.32
18388332--18388356	9	2.8	9	100	0	50	12	44	0	44	1.41
18390282--18390311	12	2.6	11	90	10	51	70	3	0	26	1.03
18390701--18390748	19	2.5	19	83	6	62	54	22	8	14	1.67
18390721--18390765	19	2.4	19	85	7	56	57	20	6	15	1.60
18391055--18391105	21	2.5	20	81	15	59	21	3	0	74	0.98
18391193--18391224	7	4.2	8	96	4	50	81	0	0	18	0.70
18391508--18391548	20	2.0	21	90	4	66	43	12	21	21	1.85
18391742--18391805	30	2.1	30	91	5	85	42	9	15	32	1.79
18392798--18392824	2	13.5	2	100	0	54	48	0	0	51	1.00
18393030--18393075	2	23.0	2	100	0	92	50	0	50	0	1.00
18393421--18393566	72	2.0	73	93	4	251	32	7	8	52	1.59
18396270--18396311	21	2.0	21	100	0	84	47	14	14	23	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18396340--18396364	2	12.5	2	100	0	50	48	0	0	52	1.00
18402133--18402162	16	1.9	16	93	6	53	66	10	0	23	1.21
18406276--18406316	9	4.7	9	85	11	50	17	9	4	68	1.35
18406267--18406316	25	2.0	25	84	11	66	18	8	4	70	1.28
18407245--18407277	16	2.0	17	88	5	50	45	6	6	42	1.53
18422843--18422867	11	2.3	11	100	0	50	32	12	32	24	1.91
18425365--18425660	149	2.0	149	94	0	520	35	22	15	26	1.94
18438352--18438665	156	2.0	158	83	3	391	40	11	7	39	1.71
18448791--18448822	3	10.7	3	100	0	64	31	0	0	68	0.90
18450061--18450128	34	2.0	34	97	0	127	44	22	11	22	1.85
18451856--18451921	31	2.1	31	88	5	98	48	3	3	45	1.33
18452688--18452740	22	2.4	21	76	14	54	64	0	1	33	1.05
18452676--18452745	24	2.9	25	76	19	78	62	1	1	34	1.13
18458258--18458433	87	2.0	87	98	0	343	20	18	15	44	1.86
18465925--18466015	34	2.6	35	73	20	84	46	1	1	51	1.15
18465996--18466026	14	2.1	15	94	5	55	48	0	0	51	1.00
18470048--18470084	18	2.1	18	89	0	56	48	0	0	51	1.00
18472441--18472481	22	1.9	21	85	5	55	17	7	24	51	1.70
18472704--18473129	195	2.2	196	86	2	590	33	8	11	45	1.72
18477199--18477252	27	2.0	27	92	0	90	24	16	20	38	1.92
18478270--18478562	146	2.0	146	100	0	586	31	10	17	40	1.83
18478668--18478978	156	2.0	156	85	3	421	29	6	21	41	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18484677--18484719	11	3.8	12	76	17	56	58	0	0	41	0.98
18487385--18487414	2	15.0	2	92	0	51	50	3	0	46	1.18
18493046--18493088	19	2.3	19	84	8	52	67	2	6	23	1.27
18493426--18493470	22	2.0	22	83	8	56	60	22	6	11	1.54
18493964--18494006	4	11.0	4	95	5	79	74	0	0	25	0.82
18497268--18497496	100	2.3	99	82	3	289	43	7	10	38	1.67
18497446--18497520	39	1.9	39	86	5	107	45	13	6	34	1.70
18498686--18498756	31	2.2	32	85	7	92	54	7	2	35	1.42
18501573--18501624	19	3.1	19	64	30	53	50	0	0	50	1.00
18501574--18501647	32	2.3	32	92	2	121	48	1	0	50	1.09
18504460--18504501	21	2.0	21	100	0	84	57	9	14	19	1.64
18509153--18509188	11	3.6	10	85	14	56	58	0	0	41	0.98
18509153--18509186	10	3.4	10	87	0	50	58	0	0	41	0.98
18510584--18511306	100	7.2	99	79	7	602	40	18	10	30	1.85
18510584--18511306	50	14.4	49	77	8	471	40	18	10	30	1.85
18519395--18519444	8	6.5	8	72	9	50	32	0	0	68	0.90
18519432--18519467	18	2.1	18	89	5	56	47	0	0	52	1.00
18523604--18523628	13	1.9	13	100	0	50	20	0	0	80	0.72
18525151--18525193	11	3.9	11	84	0	50	2	6	9	81	0.95
18528787--18529849	387	2.7	386	84	3	1370	40	7	9	42	1.67
18529951--18529989	17	2.2	18	90	4	62	66	2	0	30	1.05
18530551--18530592	2	22.0	2	90	9	70	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18533848--18533894	24	2.0	24	87	8	69	27	14	12	44	1.82
18544232--18544259	13	2.2	13	100	0	56	50	14	21	14	1.78
18548568--18548595	3	9.3	3	100	0	56	67	32	0	0	0.91
18551065--18551106	17	2.6	17	85	10	54	50	7	0	42	1.30
18551330--18551479	76	2.0	77	84	5	198	47	6	1	45	1.35
18551420--18551548	69	1.9	69	83	0	168	48	3	3	44	1.36
18557468--18557545	38	2.1	38	97	0	147	55	10	14	20	1.68
18564618--18564653	14	2.6	14	86	0	54	22	5	25	47	1.73
18564618--18564660	14	3.1	14	80	12	52	20	6	27	44	1.77
18569541--18569685	45	3.0	45	72	17	148	35	11	2	50	1.53
18571578--18571625	16	2.9	16	71	3	51	33	8	12	45	1.72
18571558--18571633	32	2.4	32	78	6	91	38	6	10	44	1.65
18572991--18573018	14	2.0	14	100	0	56	42	7	21	28	1.79
18576756--18576798	18	2.4	17	77	11	50	44	2	4	48	1.36
18576775--18576828	25	2.1	26	86	3	74	51	0	1	46	1.11
18576981--18577042	31	2.0	31	84	6	81	46	3	8	41	1.49
18577743--18577775	12	2.6	13	90	4	50	12	0	3	84	0.72
18580727--18580773	13	3.8	13	75	11	53	53	4	8	34	1.51
18580817--18580899	30	2.8	31	75	12	93	55	0	1	43	1.07
18580873--18580933	20	3.2	19	75	11	61	59	0	1	39	1.08
18580796--18580904	31	3.4	33	70	18	86	55	0	0	44	1.06
18587838--18587908	37	1.9	38	88	11	112	33	0	1	64	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18595752--18595783	12	2.6	13	85	14	50	75	25	0	0	0.81
18597039--18597100	20	3.0	20	74	4	61	54	3	6	35	1.42
18597257--18597303	18	2.6	19	80	10	62	53	0	0	46	1.00
18599443--18599477	18	1.9	18	88	0	52	54	17	2	25	1.57
18609276--18609357	18	4.6	18	82	0	92	28	34	3	34	1.75
18615214--18615250	18	2.1	18	89	0	56	45	10	16	27	1.80
18615589--18615648	21	2.8	21	80	10	68	45	20	6	28	1.76
18615612--18615752	46	3.1	45	68	9	117	43	14	7	34	1.75
18615732--18615795	31	2.1	30	86	13	87	50	7	6	35	1.57
18615762--18615835	22	3.3	21	70	17	51	43	13	9	33	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129