genome.fa.s13.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  7  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
879075--879367	143	2.0	143	96	0	541	39	10	7	41	1.69
879287--879446	79	2.0	79	98	0	311	38	15	6	40	1.74
879144--879590	222	2.0	223	96	0	815	38	12	7	41	1.72
879375--879715	131	2.5	137	85	7	428	40	12	6	41	1.68
879596--884415	180	27.0	180	76	7	3543	41	9	8	40	1.68
879597--884415	361	13.5	361	75	8	3460	41	9	8	40	1.68
879650--890148	181	58.8	175	71	12	838	41	9	8	40	1.69
884414--892676	181	46.2	180	75	8	5427	42	10	8	39	1.69
884414--892666	361	23.1	360	74	7	5121	42	10	8	39	1.69
887675--887707	17	2.0	17	88	5	50	39	18	0	42	1.50
888923--888958	16	2.1	17	90	10	56	44	5	5	44	1.50
890293--890331	19	2.2	17	90	9	60	61	0	2	35	1.10
892976--895676	181	15.1	171	71	11	892	40	7	9	41	1.66
893496--893962	167	2.7	166	76	8	375	41	7	9	41	1.66
893658--895676	181	11.2	181	75	5	1424	40	8	9	41	1.67
894265--894707	180	2.5	181	80	4	473	40	10	10	38	1.73
893836--895616	361	4.9	360	75	6	1035	40	8	9	41	1.68
896164--900391	181	23.8	177	71	11	1316	42	9	7	40	1.66
897005--900343	181	18.7	180	73	10	1853	42	9	7	41	1.65
897712--897759	18	2.7	19	75	15	57	45	6	6	41	1.54
899780--899822	23	1.9	23	85	4	61	60	2	2	34	1.22
898872--900340	718	2.0	721	79	7	1558	42	8	7	42	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
900236--900538	141	2.1	142	82	7	362	43	10	7	38	1.67
899771--901569	687	2.6	684	78	10	1585	42	9	7	40	1.66
901142--901627	177	2.7	178	78	5	503	44	10	7	37	1.68
901079--901846	355	2.2	351	80	6	848	41	9	8	40	1.68
902454--903332	178	5.0	177	74	10	661	38	8	9	43	1.68
903358--903838	181	2.7	177	77	6	517	42	8	8	39	1.68
903585--904122	284	1.9	286	84	3	728	43	8	9	38	1.67
903870--910514	181	36.6	182	72	10	3303	40	8	9	41	1.69
903859--920164	361	45.0	360	68	13	4271	40	8	9	41	1.69
906750--910522	360	10.5	355	74	10	1688	40	8	9	41	1.68
910568--915046	180	25.1	178	74	10	2555	40	7	9	41	1.67
911159--915046	180	21.8	179	75	8	2810	40	7	9	41	1.67
915618--916761	178	6.4	177	75	10	722	40	8	9	41	1.68
915644--916867	181	6.8	178	75	8	896	40	8	10	40	1.69
917409--920164	360	7.7	359	76	6	2062	40	8	10	41	1.69
917409--920163	181	15.3	180	74	8	1747	40	8	10	41	1.69
917620--940500	901	25.4	897	70	12	2522	39	8	10	41	1.69
920191--937437	181	95.2	180	71	11	6752	39	8	10	41	1.69
920204--928178	361	22.2	353	72	9	2991	39	8	10	42	1.69
920193--941227	721	29.1	715	73	11	5804	39	8	9	41	1.69
927768--928749	489	2.0	494	85	5	1315	38	9	10	41	1.71
929200--929239	19	2.0	22	85	14	59	42	15	15	27	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
928260--941238	362	36.1	362	75	8	8761	40	8	9	41	1.69
928260--941257	181	72.4	177	72	11	6679	40	8	9	41	1.69
932314--932346	18	1.9	17	88	11	50	48	6	6	39	1.53
933773--934077	166	1.8	164	80	4	362	40	7	7	43	1.63
933933--934388	177	2.5	179	81	7	541	38	6	9	45	1.63
934525--941257	361	18.8	359	74	9	4156	39	8	9	41	1.69
938082--938433	180	2.0	180	82	7	428	38	8	9	42	1.69
939508--940028	171	3.0	170	77	10	491	40	9	8	42	1.66
941456--941849	180	2.2	181	83	7	480	39	9	7	43	1.65
942148--943187	180	5.8	181	74	7	642	40	9	9	41	1.69
942801--943200	179	2.2	180	82	1	489	43	10	5	40	1.62
943583--944602	360	2.8	352	77	7	962	40	7	10	41	1.68
943288--944617	181	7.4	180	74	8	806	40	7	10	41	1.68
945436--947341	180	10.6	179	74	8	1272	39	7	9	42	1.67
945456--947343	357	5.3	360	74	9	956	40	7	9	42	1.67
947776--947949	87	2.0	87	92	2	287	39	7	5	48	1.54
947862--951898	181	22.5	177	70	13	1118	40	7	10	41	1.68
949799--950102	161	1.9	161	82	11	383	40	6	11	42	1.66
950118--950170	23	2.3	23	86	0	79	47	7	15	30	1.73
951973--952473	178	2.8	177	82	3	587	40	8	10	40	1.69
951961--952528	178	3.2	176	81	5	459	39	7	9	42	1.67
953538--953590	21	2.5	21	100	0	106	30	28	24	16	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
954383--954421	20	1.9	21	84	5	53	53	12	5	28	1.60
954707--955459	354	2.1	354	80	7	817	40	8	10	41	1.70
954345--955459	181	6.2	179	75	5	767	40	8	10	41	1.69
955472--959718	181	23.7	180	71	11	1890	39	8	10	41	1.68
955695--956878	364	3.3	358	75	7	846	41	8	9	40	1.68
956923--956978	25	2.3	23	79	11	58	32	0	8	58	1.29
955472--972560	361	47.4	359	71	10	7769	39	8	10	41	1.68
959936--959981	20	2.4	19	82	7	58	39	2	2	56	1.24
959790--964804	181	27.9	177	72	10	1771	39	8	10	42	1.69
960664--967150	181	35.8	181	70	13	2253	39	7	10	42	1.68
960666--964565	720	5.4	713	73	11	1731	39	8	10	42	1.68
957516--973350	539	29.3	541	70	12	5334	39	8	10	42	1.68
963558--963593	18	2.0	18	100	0	72	44	5	5	44	1.50
963577--964835	182	7.1	180	76	7	881	38	8	10	42	1.70
964862--965124	132	2.0	132	88	1	393	35	8	10	45	1.68
965224--966593	180	7.7	176	72	13	478	40	7	10	41	1.68
965211--966540	699	1.9	698	80	8	1560	39	7	10	42	1.68
967020--967296	139	2.0	140	82	3	335	45	6	9	38	1.61
967677--972560	181	27.2	179	76	6	3684	40	8	9	41	1.68
969676--969708	17	2.0	17	88	5	50	51	0	9	39	1.34
971590--971619	14	2.1	15	93	6	53	40	0	6	53	1.27
971738--971781	22	2.0	21	82	4	52	43	0	2	54	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
972402--972682	146	1.9	146	84	5	372	40	6	7	45	1.60
972548--973037	182	2.7	181	80	8	497	37	8	8	45	1.65
972075--973063	503	2.0	501	79	5	1068	38	7	9	44	1.66
973232--973464	118	2.0	118	83	5	292	40	6	8	44	1.59
973357--974099	177	4.2	172	76	9	577	40	8	10	41	1.69
980283--981629	177	7.6	180	74	10	930	38	7	10	43	1.69
981796--981851	5	10.8	5	84	7	76	17	1	0	80	0.80
981796--981896	21	4.6	21	74	23	93	18	0	3	76	1.00
981798--981913	26	4.4	26	73	23	84	20	2	3	73	1.10
981797--981881	31	2.7	33	79	15	99	17	1	4	76	1.02
981833--981916	15	5.4	15	73	13	64	21	2	4	71	1.16
981872--981986	8	15.0	7	69	18	52	31	5	0	62	1.23
981871--981974	21	4.9	21	72	14	61	31	4	0	62	1.22
981877--982021	46	3.2	45	76	13	120	31	6	0	60	1.28
981953--981984	14	2.3	14	94	0	55	31	6	0	62	1.20
981884--982001	21	5.5	21	74	16	75	32	6	0	60	1.29
981880--982006	22	5.6	22	72	15	73	31	7	0	60	1.29
982301--982351	26	2.0	24	85	7	66	25	1	13	58	1.46
982376--982436	31	2.0	31	87	6	88	21	19	14	44	1.86
982865--982921	3	17.0	3	89	10	60	29	0	0	70	0.88
982864--982921	17	3.4	17	95	4	100	29	0	0	70	0.87
982858--982954	38	2.6	37	79	10	94	26	1	4	68	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
982941--983007	5	13.0	5	87	12	100	17	2	0	79	0.86
982947--983008	32	1.9	32	93	6	108	16	4	0	79	0.90
983025--983252	61	3.7	61	83	10	277	41	7	12	38	1.71
993662--993746	9	9.8	9	74	15	63	84	0	8	7	0.77
993662--993747	17	5.1	17	81	12	97	84	0	8	6	0.76
993675--993746	37	1.9	37	88	5	110	83	0	9	6	0.81
993676--993737	9	6.5	10	87	10	78	82	0	11	6	0.84
993662--993747	16	5.1	15	76	17	82	84	0	8	6	0.76
993657--993762	28	3.9	29	78	16	86	78	0	12	8	1.01
993662--993747	1	86.0	1	76	0	55	84	0	8	6	0.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129