genome.fa.s13.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  108  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19443767--19443925	58	2.7	58	85	5	196	33	11	9	45	1.72
19443954--19443992	14	2.8	14	85	11	53	76	0	7	15	0.99
19444027--19444080	19	3.1	17	82	17	67	81	0	1	16	0.78
19444878--19444909	16	1.9	17	93	6	57	81	6	0	12	0.87
19444931--19444978	20	2.5	20	80	16	64	62	6	8	22	1.46
19444961--19445047	21	3.9	22	79	16	81	62	1	5	31	1.26
19444972--19445055	26	3.5	25	81	12	97	61	1	4	32	1.24
19446979--19447140	80	2.0	80	87	2	236	32	19	11	37	1.87
19448544--19448576	13	2.8	12	86	13	50	81	3	0	15	0.80
19448542--19448577	18	1.9	19	94	5	65	80	2	0	16	0.83
19449480--19449504	3	8.3	3	100	0	50	36	0	32	32	1.58
19449692--19450189	120	4.2	120	81	3	484	42	15	24	17	1.88
19449707--19450175	240	2.0	240	80	3	541	43	14	23	18	1.87
19450277--19450512	119	2.0	119	83	0	301	38	14	26	19	1.90
19450842--19450922	34	2.4	34	81	8	92	38	17	16	28	1.91
19450837--19451017	82	2.2	82	81	0	200	40	13	16	30	1.86
19450995--19451024	13	2.3	13	100	0	60	50	10	13	26	1.73
19451911--19451995	8	10.1	8	80	12	75	3	16	0	80	0.86
19451913--19451971	9	6.4	9	84	7	75	5	11	0	83	0.81
19451913--19451997	18	4.4	18	75	11	62	3	15	0	81	0.83
19451949--19451997	14	3.5	13	81	10	53	2	16	0	81	0.78
19455884--19455928	19	2.2	21	88	7	67	24	0	13	62	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19456160--19456185	11	2.4	11	100	0	52	76	7	0	15	0.99
19457074--19457108	3	11.7	3	100	0	70	34	0	31	34	1.58
19457107--19457148	3	14.0	3	90	9	68	66	0	2	30	1.04
19464319--19464373	24	2.2	24	87	9	76	41	0	0	58	0.98
19464327--19464379	24	2.3	24	75	9	58	43	0	0	56	0.99
19464345--19464404	14	4.3	14	76	18	54	38	1	1	58	1.18
19464388--19464434	18	2.7	17	81	12	51	29	8	0	61	1.25
19464987--19465024	15	2.5	15	91	0	58	23	2	0	73	0.95
19470296--19470685	207	1.9	208	84	5	522	35	14	5	44	1.69
19470793--19470832	19	2.1	19	86	9	55	75	0	0	25	0.81
19482180--19482243	30	2.1	30	91	0	101	51	1	6	40	1.36
19482189--19482301	60	1.9	59	80	8	131	49	3	9	37	1.53
19482512--19482549	19	1.9	19	89	5	58	44	0	21	34	1.52
19484566--19484648	43	1.9	44	87	7	125	43	7	9	39	1.65
19490920--19491003	20	4.0	21	78	7	82	57	2	4	35	1.33
19491360--19491405	15	3.1	14	78	9	56	45	0	0	54	0.99
19491339--19491435	14	6.6	14	68	24	58	41	1	1	56	1.13
19492018--19492055	15	2.5	15	91	0	58	21	2	2	73	1.07
19492106--19492139	13	2.7	12	90	9	50	20	2	2	73	1.09
19493529--19493598	30	2.4	30	78	7	81	35	10	1	52	1.44
19494293--19494338	12	3.8	12	81	16	58	50	0	0	50	1.00
19494293--19494342	11	4.4	11	80	7	55	46	0	0	54	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19496688--19496731	18	2.4	19	85	7	56	45	0	6	47	1.29
19504392--19504524	30	4.6	30	71	8	105	47	3	10	39	1.53
19505992--19506059	29	2.3	31	92	5	113	23	14	23	38	1.92
19507825--19507861	16	2.2	16	90	4	56	32	0	5	62	1.18
19514843--19514879	12	3.0	12	88	4	56	62	0	0	37	0.96
19521926--19521953	2	14.0	2	100	0	56	50	0	0	50	1.00
19528237--19528283	3	15.7	3	89	8	69	36	2	0	61	1.08
19528236--19528283	16	2.9	16	93	3	78	37	2	0	60	1.09
19532624--19532752	41	3.0	40	76	11	116	33	0	5	60	1.25
19532705--19532757	18	2.8	19	85	2	63	28	0	7	64	1.21
19532705--19532775	28	2.5	28	82	8	74	29	1	7	61	1.30
19533573--19533597	10	2.5	10	100	0	50	36	0	0	64	0.94
19533623--19533685	28	2.3	28	81	10	76	36	6	4	52	1.48
19533724--19533766	18	2.3	20	80	15	56	13	6	0	79	0.93
19534219--19534253	14	2.4	15	90	4	54	65	0	0	34	0.93
19535797--19535861	24	2.6	27	83	11	84	44	4	10	40	1.60
19538158--19538353	55	3.6	53	68	8	142	21	21	16	39	1.92
19538157--19538416	111	2.3	110	77	5	265	21	21	16	40	1.91
19538694--19538954	111	2.4	111	77	1	254	24	22	13	38	1.91
19539332--19539437	3	37.3	3	71	11	53	31	4	4	59	1.39
19539392--19539421	13	2.3	13	94	0	51	40	0	3	56	1.16
19539374--19539437	18	3.4	18	81	14	76	37	4	3	54	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19539356--19539420	21	3.1	21	75	16	64	33	4	4	56	1.40
19539748--19539789	22	2.0	22	85	4	59	16	2	30	50	1.58
19539831--19539874	22	2.0	22	82	8	54	27	6	22	43	1.78
19540245--19540297	16	3.2	17	81	13	65	7	1	3	86	0.75
19540245--19540316	35	2.1	33	85	10	92	9	2	4	83	0.88
19540243--19540292	1	50.0	1	79	0	55	6	2	2	90	0.61
19542450--19542521	22	3.3	22	71	7	74	20	9	23	45	1.81
19542865--19542911	20	2.4	19	76	16	51	25	0	2	72	0.96
19543930--19543984	7	7.6	7	81	18	60	81	0	3	14	0.82
19551269--19551404	51	2.7	51	87	4	186	32	8	13	45	1.74
19551663--19552230	239	2.4	236	81	5	669	33	10	13	42	1.79
19552496--19552530	13	2.7	13	86	0	52	28	0	20	51	1.47
19553152--19553215	28	2.2	29	83	5	76	26	3	21	48	1.65
19557173--19557223	6	8.3	6	79	12	59	62	0	0	37	0.95
19557176--19557214	11	3.6	10	86	13	51	64	0	0	35	0.94
19557175--19557231	12	4.6	13	83	12	68	63	0	0	36	0.95
19557158--19557237	27	2.9	28	78	15	80	62	0	0	37	0.95
19561692--19562136	186	2.4	185	82	5	522	32	12	16	38	1.86
19562164--19562379	108	2.0	108	94	0	378	29	16	12	42	1.84
19565143--19565198	28	2.0	28	89	3	87	37	7	8	46	1.63
19565625--19565659	17	2.1	17	100	0	70	48	5	11	34	1.63
19572771--19572815	24	2.0	22	86	8	63	13	4	8	73	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19583468--19583515	8	6.0	8	85	7	62	77	0	2	20	0.88
19583470--19583516	17	2.9	17	87	6	62	80	0	2	17	0.80
19583470--19583508	9	4.4	9	93	3	62	79	0	2	17	0.84
19584248--19584310	33	1.9	33	86	0	90	30	11	19	39	1.86
19584555--19584597	19	2.3	19	91	0	68	30	4	16	48	1.66
19584905--19584968	23	2.7	24	83	9	78	20	4	3	71	1.17
19585839--19585884	17	2.8	16	86	6	56	21	0	4	73	1.00
19586535--19586626	43	2.1	46	87	6	136	60	7	8	22	1.51
19588652--19588690	18	2.2	18	86	9	53	23	15	12	48	1.79
19596534--19596715	90	2.0	88	81	8	208	34	11	9	44	1.74
19597695--19597735	6	7.3	6	84	13	52	65	2	0	31	1.05
19598145--19598373	66	3.5	67	77	8	202	47	15	18	17	1.83
19609200--19609245	21	2.2	21	88	3	67	67	4	6	21	1.32
19612017--19612116	39	2.6	38	84	6	130	28	14	14	44	1.83
19612167--19612211	21	2.1	21	87	0	63	15	17	15	51	1.77
19612187--19612370	39	4.8	38	81	6	194	24	13	17	44	1.85
19612188--19612370	77	2.4	75	81	10	203	24	13	16	44	1.84
19612188--19612370	38	4.8	38	80	8	167	24	13	16	44	1.84
19622180--19622295	13	9.7	12	68	14	69	49	29	3	18	1.64
19622194--19622285	23	4.0	23	91	4	132	46	29	4	19	1.69
19622802--19622931	62	2.1	62	87	5	183	39	13	16	31	1.86
19622903--19623365	124	3.8	123	80	7	494	37	13	14	34	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19626085--19626113	12	2.5	12	94	5	51	58	0	24	17	1.38
19629775--19629828	19	2.9	19	94	2	92	24	11	22	42	1.85
19630271--19630485	107	2.0	106	89	0	331	41	9	22	26	1.84
19632577--19632621	23	2.0	23	95	0	81	26	24	20	28	1.99
19639042--19639113	17	4.4	16	70	13	56	52	2	0	44	1.15
19639049--19639119	33	2.2	32	84	2	97	50	4	0	45	1.21
19639057--19639106	16	3.1	16	75	16	57	48	4	0	48	1.20
19639151--19639231	39	2.0	39	81	9	92	38	0	2	59	1.11
19647541--19647575	16	2.2	16	94	0	61	45	2	20	31	1.65
19650275--19650307	17	1.9	17	93	0	57	39	9	21	30	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129