genome.fa.s13.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  47  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9290583--9290650	30	2.3	30	76	2	75	39	0	4	55	1.20
9293266--9293742	239	2.0	238	81	2	562	28	16	11	43	1.83
9301628--9301654	11	2.5	11	100	0	54	66	0	7	25	1.17
9301851--9301902	26	2.0	26	85	7	70	32	15	19	32	1.93
9303759--9303798	18	2.1	18	86	9	53	45	0	7	47	1.31
9307870--9307910	20	2.0	20	86	9	57	60	0	2	36	1.10
9312435--9312475	20	2.0	20	86	9	57	56	2	4	36	1.34
9316892--9316942	25	2.0	25	100	0	102	35	13	15	35	1.87
9324005--9324050	25	1.9	24	86	8	67	34	10	21	32	1.88
9325020--9325095	30	2.6	29	85	6	100	44	3	0	51	1.20
9326970--9327154	91	2.0	91	96	0	343	28	16	25	29	1.97
9328616--9328748	52	2.6	52	85	3	187	26	21	7	44	1.79
9328772--9328824	22	2.5	22	84	3	63	50	16	1	30	1.56
9329898--9329947	21	2.5	20	81	18	59	36	4	0	60	1.16
9329897--9329948	22	2.4	22	84	15	72	36	3	0	59	1.16
9330510--9330547	19	2.0	20	84	5	51	50	2	0	47	1.15
9333283--9333323	19	2.2	19	91	8	66	31	46	0	21	1.52
9337091--9337320	59	3.9	58	82	8	245	52	4	6	36	1.48
9342240--9342298	23	2.5	23	81	8	57	16	6	1	74	1.11
9342281--9342338	22	2.6	21	78	10	71	24	5	3	67	1.27
9344375--9344406	16	2.0	16	93	0	55	65	3	0	31	1.08
9344375--9344412	16	2.4	16	86	8	51	68	2	2	26	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9344375--9344412	15	2.4	16	86	4	51	68	2	2	26	1.16
9354432--9354490	29	2.1	27	84	9	75	40	15	16	27	1.89
9368320--9368360	15	2.9	14	86	10	57	34	2	0	63	1.08
9368802--9368848	24	2.0	24	95	0	85	42	6	10	40	1.65
9368894--9368950	9	6.3	9	75	4	53	73	1	12	12	1.17
9369558--9369597	20	2.0	20	90	0	62	17	27	32	22	1.96
9369824--9369965	75	1.9	76	92	1	241	47	4	9	38	1.57
9369892--9370124	58	3.9	58	78	14	256	48	5	9	37	1.58
9369807--9370124	127	2.4	130	87	6	432	49	5	9	36	1.57
9374231--9374265	13	2.6	13	86	4	52	82	0	0	17	0.66
9375149--9375192	23	1.9	23	90	9	72	45	4	22	27	1.72
9375525--9375566	21	2.0	21	95	0	75	38	11	9	40	1.75
9375527--9375735	79	2.6	79	87	3	303	36	12	16	33	1.87
9376033--9376271	41	5.8	41	84	2	259	27	12	16	43	1.84
9376033--9376271	123	1.9	123	86	3	338	27	12	16	43	1.84
9377171--9377203	9	3.7	9	92	8	50	18	0	0	81	0.68
9377310--9377584	62	4.3	60	81	11	298	51	5	10	32	1.59
9377310--9377575	134	2.0	129	87	5	381	51	5	10	32	1.59
9377477--9377620	62	2.4	58	80	11	159	47	6	11	34	1.66
9382380--9382425	22	2.1	22	92	4	76	63	6	4	26	1.38
9388210--9388262	24	2.3	23	81	12	63	26	1	1	69	1.09
9394347--9394380	18	1.9	18	88	5	52	2	14	26	55	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9395683--9395719	15	2.5	15	90	0	56	54	5	0	40	1.24
9397830--9397883	3	18.0	3	92	0	90	31	1	1	64	1.14
9403448--9403483	18	2.0	18	88	0	54	27	0	2	69	1.02
9408176--9408205	14	2.1	14	93	0	51	40	0	0	60	0.97
9408764--9408814	2	25.5	2	100	0	102	49	0	50	0	1.00
9412816--9412859	22	2.0	22	86	4	63	22	13	15	47	1.81
9412823--9412867	22	2.0	22	82	0	54	22	15	13	48	1.79
9423099--9423152	21	2.6	22	85	5	60	42	16	20	20	1.89
9426540--9426584	2	22.5	2	100	0	90	51	0	48	0	1.00
9434360--9434401	17	2.3	19	92	8	70	71	0	0	28	0.86
9434520--9434558	18	2.0	20	85	9	55	41	7	2	48	1.45
9438366--9438420	18	3.2	18	78	16	55	43	0	0	56	0.99
9438379--9438422	12	3.6	12	78	6	52	40	0	0	59	0.98
9445645--9445682	17	2.2	17	90	0	58	57	0	5	36	1.21
9445723--9445752	14	2.1	14	93	0	51	46	3	0	50	1.18
9446632--9446666	11	3.2	11	87	0	52	37	0	2	60	1.12
9457937--9457969	16	2.1	16	100	0	66	27	18	6	48	1.71
9466752--9466856	8	13.0	8	71	18	67	28	0	1	69	0.99
9466746--9466851	23	4.5	23	77	14	101	28	0	1	68	1.06
9466797--9466851	9	6.4	9	76	16	55	21	0	3	74	0.97
9466716--9466843	49	2.5	51	72	17	122	29	0	3	66	1.12
9466840--9466899	13	4.7	13	81	8	61	33	3	1	61	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9466880--9466914	15	2.4	14	95	4	61	34	0	5	60	1.21
9470673--9470767	38	2.5	39	84	6	122	28	5	29	36	1.79
9473010--9473075	6	10.8	6	78	15	55	24	0	3	72	0.98
9473016--9473054	16	2.4	17	87	8	55	28	0	2	69	1.02
9472999--9473094	6	18.4	5	71	16	54	21	2	2	73	1.03
9473000--9473077	25	3.2	26	79	13	87	20	1	2	75	0.99
9473592--9473634	13	3.3	13	75	12	52	46	13	2	37	1.57
9478958--9478993	18	2.0	18	89	10	56	72	11	11	5	1.28
9479425--9479479	28	2.0	28	85	0	74	7	5	63	23	1.41
9481353--9481396	22	2.0	22	86	8	63	50	11	4	34	1.59
9482777--9482841	31	2.3	26	75	25	76	38	10	4	46	1.60
9488268--9488353	27	3.1	27	80	12	88	60	1	3	34	1.21
9488304--9488362	29	2.1	27	84	6	73	61	1	1	35	1.16
9488626--9488675	24	2.0	25	81	11	59	70	2	2	26	1.09
9488783--9488840	20	3.0	20	82	17	77	39	3	3	53	1.35
9488931--9488976	19	2.4	19	85	7	58	36	0	2	60	1.09
9488949--9489007	9	6.7	9	72	16	52	35	0	0	64	0.94
9488969--9489042	29	2.7	26	80	12	69	40	2	1	55	1.22
9489030--9489096	20	3.3	20	75	4	71	29	0	7	62	1.22
9489032--9489096	21	3.1	21	77	4	78	27	0	7	64	1.20
9489023--9489096	10	7.2	10	79	10	60	29	1	6	62	1.29
9488930--9489096	18	8.8	19	67	16	53	35	1	4	59	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9491852--9491898	18	2.7	17	78	15	60	29	10	23	36	1.89
9491733--9491956	86	2.6	86	85	2	281	36	15	18	29	1.91
9491856--9491998	68	2.1	68	84	2	180	37	11	19	32	1.87
9493480--9493523	20	2.2	20	88	8	63	0	13	4	81	0.83
9493480--9493523	10	4.3	10	80	5	52	0	13	4	81	0.83
9499245--9499277	10	3.3	10	100	0	66	39	18	0	42	1.50
9499883--9499922	18	2.3	18	86	4	55	40	2	7	50	1.44
9501821--9501859	20	2.0	20	84	0	51	53	0	0	46	1.00
9502410--9502440	2	15.5	2	100	0	62	0	48	0	51	1.00
9510259--9510309	21	2.4	21	80	9	59	52	0	1	45	1.12
9514297--9514327	15	2.0	16	93	6	55	22	0	0	77	0.77
9514306--9514345	17	2.4	16	83	4	53	22	0	2	75	0.93
9537368--9537413	15	3.2	15	84	9	60	56	6	0	36	1.25
9537369--9537413	13	3.3	13	82	11	54	55	6	0	37	1.26
9539809--9539840	17	1.9	16	93	6	55	46	0	3	50	1.17
9539809--9539872	29	2.2	29	78	10	69	46	0	1	51	1.10
9539890--9539931	22	1.9	22	95	0	75	52	9	0	38	1.34
9544465--9544525	32	1.9	32	83	6	79	32	0	3	63	1.10
9544523--9544638	56	2.1	57	83	4	146	57	19	0	21	1.46
9544807--9544858	15	3.4	15	81	5	50	71	5	5	17	1.26
9556167--9556212	23	2.0	23	82	0	56	36	0	17	45	1.49
9556532--9556583	24	2.2	22	78	15	59	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9556665--9556724	32	1.9	31	89	3	93	50	5	3	41	1.41
9557368--9557435	15	4.3	15	75	15	57	52	0	0	47	1.00
9557373--9557416	19	2.4	18	88	3	61	56	0	0	43	0.99
9563279--9563349	29	2.4	29	80	15	76	43	0	1	54	1.08
9563327--9563400	31	2.3	32	84	9	98	45	0	1	52	1.09
9563289--9563452	70	2.6	61	78	19	158	43	0	1	54	1.07
9563347--9563420	30	2.5	31	84	4	89	44	0	1	54	1.08
9564813--9564857	18	2.5	18	82	7	56	73	8	4	13	1.23
9564935--9565071	67	2.0	67	94	0	238	41	8	11	38	1.71
9580422--9580661	124	1.9	123	80	7	281	43	9	12	34	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129