genome.fa.s13.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  115  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20657289--20657376	38	2.3	38	86	7	108	48	35	1	14	1.52
20658190--20658235	20	2.3	20	92	3	76	32	4	0	63	1.14
20658366--20658421	14	4.0	13	80	17	51	46	1	3	48	1.30
20658380--20658466	14	6.2	14	72	16	65	48	1	3	47	1.26
20658388--20658476	14	6.3	14	69	19	60	51	1	3	43	1.25
20661017--20661087	34	2.1	33	92	2	115	39	7	19	33	1.79
20663353--20663396	23	1.9	23	95	0	79	54	15	13	15	1.71
20667224--20667263	20	2.0	20	100	0	80	30	5	45	20	1.72
20667228--20667272	20	2.2	20	92	0	72	33	6	37	22	1.80
20669613--20669693	27	2.9	28	79	3	92	37	6	19	37	1.77
20675067--20675184	60	2.0	60	93	3	202	37	10	21	31	1.87
20683691--20683744	26	2.1	26	96	0	99	27	11	16	44	1.82
20687484--20687564	31	2.6	31	94	0	135	43	7	6	43	1.57
20688245--20688375	12	9.7	13	71	20	74	45	32	2	19	1.63
20688247--20688375	7	20.2	6	70	21	77	45	32	2	19	1.63
20688304--20688364	26	2.3	26	82	0	77	45	34	1	18	1.59
20688247--20688386	19	7.2	20	74	14	107	46	32	2	19	1.62
20688350--20688394	12	3.4	14	85	8	51	46	40	2	11	1.52
20688654--20688704	3	17.0	3	100	0	102	33	0	0	66	0.92
20689250--20689295	20	2.3	20	88	3	67	32	2	2	63	1.19
20689437--20689523	14	6.2	14	72	16	65	48	1	3	47	1.26
20689445--20689533	14	6.3	14	69	19	60	51	1	3	43	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20689620--20689690	31	2.2	33	87	7	101	40	7	14	38	1.73
20689750--20689809	21	2.9	21	84	0	75	38	30	13	18	1.89
20692064--20692133	34	2.1	34	91	0	113	41	8	18	31	1.81
20703095--20703145	21	2.5	21	96	3	95	49	0	0	50	1.00
20703111--20703181	30	2.3	30	78	2	79	57	1	0	40	1.07
20713358--20713396	21	2.0	20	85	10	53	58	7	2	30	1.39
20713855--20714067	95	2.2	95	95	1	383	49	1	8	40	1.43
20717925--20717959	14	2.5	14	95	0	61	82	0	2	14	0.77
20720739--20720883	16	9.2	16	72	10	111	47	26	2	22	1.65
20720926--20720998	30	2.4	30	80	11	78	46	30	1	21	1.60
20727458--20727493	18	1.9	18	88	5	54	88	8	2	0	0.59
20727909--20727949	13	3.4	12	81	18	50	85	0	12	2	0.70
20727907--20727949	23	1.9	22	90	4	68	83	0	13	2	0.74
20728757--20728940	32	5.7	32	82	5	165	31	20	14	33	1.93
20728757--20728940	64	2.9	64	80	8	205	31	20	14	33	1.93
20729691--20729777	37	2.3	38	88	5	142	18	18	11	51	1.75
20731149--20731198	18	2.8	19	75	22	54	24	2	4	70	1.15
20731573--20731750	15	11.2	16	76	8	141	48	28	2	20	1.62
20731582--20731705	7	16.0	7	67	15	50	49	28	2	20	1.61
20731573--20731754	48	3.8	47	79	7	172	47	29	2	21	1.63
20731579--20731728	32	4.8	31	77	8	151	47	29	2	21	1.62
20733142--20733180	16	2.4	17	86	4	53	61	0	2	35	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20733120--20733183	25	2.5	25	75	10	67	54	1	3	40	1.25
20734068--20734138	20	3.5	20	74	9	72	54	2	4	38	1.34
20734807--20734934	67	1.9	67	82	3	159	47	3	15	32	1.64
20735213--20735280	21	3.3	20	71	17	59	58	1	2	36	1.22
20735473--20735509	15	2.4	16	86	13	51	54	0	5	40	1.24
20736971--20737005	2	17.5	2	87	0	52	45	2	2	48	1.32
20737346--20737374	2	15.0	2	92	7	51	48	0	0	51	1.00
20738440--20738464	2	12.5	2	100	0	50	52	0	0	48	1.00
20740314--20740406	29	3.2	28	82	12	109	40	2	1	55	1.19
20740313--20740406	31	3.2	31	83	13	126	40	2	1	56	1.18
20740317--20740397	15	5.4	15	67	15	51	41	2	1	54	1.21
20748334--20748370	19	2.0	19	89	5	58	27	0	0	72	0.84
20749610--20749636	3	9.0	3	100	0	54	66	0	0	33	0.92
20750654--20751029	204	1.8	206	81	8	464	34	14	5	45	1.69
20752125--20752181	29	2.0	28	83	13	71	68	1	26	3	1.15
20752420--20752989	46	11.9	48	79	10	562	34	21	13	30	1.92
20752420--20752984	95	5.9	92	78	10	494	35	20	13	30	1.92
20752426--20752986	141	3.9	138	82	8	545	34	21	13	30	1.92
20757252--20757295	14	3.1	14	81	15	54	56	2	27	13	1.49
20764022--20764055	5	6.8	5	93	0	59	2	0	17	79	0.86
20764971--20764996	13	2.0	13	100	0	52	23	7	0	69	1.14
20764821--20765202	202	1.9	201	82	6	488	34	12	7	45	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20766366--20766407	18	2.4	18	84	11	52	69	0	30	0	0.89
20766426--20766455	16	1.9	15	93	6	51	86	0	6	6	0.70
20767001--20767080	13	6.0	13	77	10	72	15	3	3	77	1.05
20767002--20767108	5	21.2	5	73	20	73	18	2	3	74	1.09
20767008--20767108	35	2.9	34	77	12	89	18	1	3	75	1.06
20767302--20767333	9	3.8	9	84	16	50	78	0	0	21	0.76
20767618--20767682	3	21.7	3	100	0	130	67	0	0	32	0.91
20767613--20767699	6	14.0	6	92	4	57	68	2	0	28	1.01
20774751--20775636	232	3.9	231	81	7	866	34	9	11	43	1.74
20775882--20775919	15	2.5	15	91	0	58	71	0	23	5	1.07
20776930--20776970	20	2.0	20	90	0	64	43	0	0	56	0.99
20782231--20782258	6	4.7	6	100	0	56	85	0	0	14	0.59
20783248--20783380	41	3.3	39	74	13	126	29	15	15	40	1.87
20783375--20783480	41	2.5	42	83	7	117	30	16	15	37	1.90
20784801--20784833	9	3.8	9	92	8	59	78	0	0	21	0.75
20785428--20785542	50	2.3	50	79	7	126	40	8	13	36	1.76
20788399--20788423	13	1.9	13	100	0	50	52	0	0	48	1.00
20788469--20788500	16	2.0	16	100	0	64	56	0	0	43	0.99
20792066--20792119	22	2.3	23	93	6	92	51	0	0	48	1.00
20792832--20792860	3	9.7	3	100	0	58	68	0	0	31	0.89
20795830--20795871	18	2.3	18	84	8	50	28	2	4	64	1.26
20797185--20797222	2	19.5	2	94	5	69	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20801742--20801772	12	2.6	12	94	0	53	22	0	3	74	0.96
20801935--20801970	19	1.9	19	88	5	56	36	0	0	63	0.94
20802156--20802197	15	2.6	17	77	11	52	30	4	0	64	1.14
20803016--20803065	22	2.2	23	85	3	66	14	10	4	72	1.26
20803241--20803291	10	5.1	10	81	11	52	76	0	21	1	0.88
20803241--20803287	7	6.9	7	79	13	53	74	0	23	2	0.93
20803244--20803279	17	2.2	17	90	5	56	75	0	25	0	0.81
20805152--20805197	22	2.1	22	95	0	83	56	0	0	43	0.99
20806708--20806739	16	1.9	17	93	6	57	62	0	0	37	0.95
20806704--20806740	8	4.8	8	84	15	51	64	0	0	35	0.94
20806704--20806752	23	2.1	23	88	7	73	67	0	0	32	0.91
20807699--20807762	30	2.1	30	88	5	94	32	21	17	28	1.96
20808409--20808464	24	2.5	22	82	8	69	58	0	0	41	0.98
20808473--20808544	31	2.3	31	85	4	92	48	0	1	50	1.09
20808485--20808528	13	3.7	12	79	11	54	52	0	0	47	1.00
20808473--20808540	30	2.2	31	84	7	86	48	0	1	50	1.10
20808752--20808780	14	2.0	15	93	6	51	51	0	6	41	1.28
20808836--20808888	22	2.4	22	96	3	97	60	0	0	39	0.97
20808935--20809003	36	1.9	36	82	11	88	43	0	1	55	1.08
20811107--20811133	14	1.9	14	100	0	54	62	0	0	37	0.95
20814080--20814121	20	2.1	20	90	0	66	28	14	19	38	1.90
20814285--20814326	19	2.2	20	87	8	61	45	0	2	52	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20816167--20816233	20	3.3	20	87	0	80	35	19	16	28	1.93
20816201--20816243	20	2.2	20	91	0	68	32	23	16	27	1.96
20816507--20816547	11	3.6	12	74	12	50	60	0	0	39	0.96
20816892--20816948	21	2.9	21	73	23	61	54	1	0	43	1.10
20816923--20817004	34	2.4	35	82	8	98	46	1	1	51	1.16
20816936--20816989	15	3.6	15	71	0	54	44	1	1	51	1.22
20823086--20823115	13	2.2	14	94	5	53	10	13	0	76	1.01
20823086--20823115	7	4.4	7	91	8	53	10	13	0	76	1.01
20825571--20825627	30	1.9	29	85	3	78	35	1	5	57	1.31
20825665--20825709	23	2.0	23	86	0	63	53	4	6	35	1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129