genome.fa.s13.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  46  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9068922--9069011	29	3.4	27	75	17	98	28	4	1	65	1.19
9070733--9070795	24	2.5	25	82	15	76	42	1	1	53	1.19
9071095--9071134	17	2.4	17	82	0	53	35	2	10	52	1.48
9072138--9072210	30	2.5	28	77	18	78	61	5	1	31	1.27
9072198--9072247	23	2.2	23	85	0	64	62	6	0	32	1.20
9072387--9072517	20	6.7	19	69	14	72	51	2	1	45	1.23
9072375--9072518	69	2.1	68	77	8	148	50	2	2	44	1.28
9072407--9072449	19	2.2	20	83	4	52	53	2	0	44	1.13
9072427--9072488	30	2.1	29	85	8	81	56	1	1	40	1.19
9072724--9072761	19	2.0	19	89	0	58	47	0	2	50	1.15
9072744--9072828	28	3.3	26	77	9	75	56	3	4	35	1.37
9072720--9072871	9	16.6	9	66	16	71	55	3	3	37	1.32
9072813--9072871	22	2.9	21	75	9	61	57	3	1	37	1.25
9073006--9073048	20	2.2	19	83	4	50	25	2	11	60	1.43
9073063--9073126	19	3.2	19	75	16	67	40	1	4	53	1.31
9073064--9073158	20	4.8	18	74	18	57	38	2	6	52	1.39
9073353--9073382	8	3.8	8	95	0	51	0	30	0	70	0.88
9076059--9076104	21	2.1	22	84	11	60	41	0	2	56	1.11
9076585--9076614	15	2.0	15	93	0	51	63	6	6	23	1.43
9076410--9077423	509	2.0	501	83	5	1288	39	9	16	34	1.80
9079955--9080016	23	2.7	23	87	5	81	33	11	12	41	1.79
9080174--9080235	1	62.0	1	77	0	61	88	0	4	6	0.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9080176--9080235	17	3.4	17	86	6	84	88	0	5	6	0.63
9080175--9080235	18	3.4	17	82	8	77	88	0	4	6	0.63
9080187--9080270	6	14.2	6	78	13	50	77	1	3	17	0.98
9080419--9080655	44	5.2	44	73	10	153	40	15	13	31	1.86
9080641--9080812	93	1.8	93	86	4	249	40	20	11	27	1.87
9080587--9080844	47	5.5	47	81	4	263	39	19	12	28	1.88
9089991--9090029	19	2.1	19	95	0	69	38	20	2	38	1.66
9094809--9094858	23	2.2	23	85	7	66	28	20	10	42	1.84
9095007--9095047	14	2.9	14	86	13	57	78	0	17	4	0.93
9100298--9100346	21	2.4	20	79	3	53	46	32	0	20	1.51
9100726--9100752	3	9.0	3	100	0	54	66	0	0	33	0.92
9100726--9100838	8	14.4	8	70	11	56	58	7	1	32	1.35
9102455--9102493	19	2.1	19	85	9	53	7	7	0	84	0.77
9107030--9107059	13	2.3	13	94	0	51	80	3	3	13	0.97
9107790--9107837	3	16.0	3	100	0	96	66	0	0	33	0.92
9110538--9110593	26	2.3	24	81	9	69	51	0	1	46	1.11
9110546--9110604	26	2.3	26	82	5	75	54	0	1	44	1.10
9110549--9110602	24	2.2	26	83	6	67	55	0	1	42	1.10
9119488--9119554	26	2.6	26	88	2	91	43	16	23	16	1.87
9119758--9119799	22	1.9	22	90	0	66	45	9	11	33	1.73
9119759--9119811	22	2.4	22	81	6	54	49	7	11	32	1.67
9119940--9119968	6	4.8	6	100	0	58	17	65	0	17	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9124638--9124679	17	2.5	17	85	11	52	28	4	0	66	1.12
9127220--9127267	13	3.9	12	78	13	53	52	2	0	45	1.12
9128644--9128687	21	2.1	21	95	0	79	54	9	0	36	1.32
9129168--9129202	18	1.9	18	88	0	52	40	0	2	57	1.14
9131419--9131456	20	1.9	20	100	0	76	23	0	0	76	0.79
9132329--9132604	41	6.8	40	74	11	249	47	17	12	22	1.81
9132337--9132601	81	3.2	81	82	3	318	49	16	12	21	1.79
9132335--9132598	122	2.2	122	82	3	316	49	16	12	21	1.78
9132787--9132822	16	2.2	16	90	0	54	36	13	11	38	1.81
9133003--9133063	28	2.1	30	84	6	81	40	24	6	27	1.80
9133027--9133073	22	2.1	22	92	7	78	44	21	8	25	1.80
9133032--9133113	21	3.9	21	81	1	83	37	14	8	39	1.77
9134314--9134357	22	2.0	22	86	0	61	2	18	0	79	0.83
9140446--9140514	28	2.4	29	85	9	88	53	2	0	43	1.15
9147157--9147216	10	5.7	10	82	4	66	46	5	1	46	1.34
9152193--9152218	13	2.0	13	100	0	52	30	0	0	69	0.89
9152016--9152600	302	1.9	304	84	5	783	39	12	7	39	1.72
9162022--9162069	24	2.0	25	87	4	71	41	0	0	58	0.98
9165265--9165312	21	2.3	20	79	13	53	43	0	16	39	1.48
9171893--9171929	19	2.1	18	90	10	58	64	0	0	35	0.94
9179007--9179053	19	2.4	21	76	20	57	59	6	2	31	1.34
9181148--9181197	13	3.7	13	84	13	57	56	0	2	42	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9181327--9181359	10	3.4	10	91	4	50	57	0	0	42	0.98
9181389--9181429	7	6.0	7	78	16	50	29	0	2	68	1.03
9181391--9181429	13	2.9	13	88	3	60	28	0	2	69	1.02
9186507--9186553	17	2.8	17	83	6	60	74	2	14	8	1.15
9187850--9187961	59	1.9	58	88	1	170	40	10	9	39	1.73
9187849--9188027	94	1.9	96	85	3	254	40	11	10	37	1.75
9187909--9188000	35	2.6	35	91	0	148	40	10	9	39	1.73
9187974--9188030	27	2.1	27	90	6	89	42	15	8	33	1.78
9188552--9188711	76	2.1	75	82	2	185	30	8	15	45	1.75
9188741--9188882	77	1.9	76	90	1	230	35	11	14	39	1.81
9188905--9189097	98	2.0	99	85	1	262	22	15	19	42	1.89
9188947--9189127	98	1.8	98	84	2	247	22	16	20	41	1.90
9189074--9189186	42	2.7	42	81	2	138	23	11	23	41	1.87
9189518--9189543	13	2.0	13	100	0	52	15	0	0	84	0.62
9189479--9189543	15	4.5	14	76	12	60	18	4	0	76	0.95
9190482--9190525	15	2.9	15	86	3	52	65	6	2	25	1.28
9193144--9193186	19	2.3	19	79	0	50	76	2	13	6	1.08
9193595--9196293	903	3.0	901	93	2	4537	37	10	17	34	1.84
9196333--9196376	23	1.9	23	85	0	61	75	2	11	11	1.15
9197038--9197096	26	2.2	26	76	8	66	71	1	15	11	1.23
9198097--9198247	33	4.6	33	73	1	106	22	19	10	47	1.79
9198127--9198352	33	7.0	33	67	7	124	19	19	13	47	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9199506--9199552	3	15.7	3	90	0	76	27	0	4	68	1.08
9200801--9200864	2	32.0	2	90	0	101	48	3	1	46	1.27
9215571--9215601	2	16.0	2	93	6	55	48	0	0	51	1.00
9219365--9219389	2	12.5	2	100	0	50	52	0	0	48	1.00
9222463--9222489	2	13.5	2	100	0	54	51	0	0	48	1.00
9225436--9225494	31	1.9	31	96	0	109	30	0	8	61	1.26
9234344--9234386	21	2.1	21	86	4	61	46	2	2	48	1.27
9235728--9235770	16	2.7	16	86	10	61	51	0	2	46	1.13
9236575--9236609	12	2.8	12	91	4	52	48	0	2	48	1.16
9239576--9239620	21	2.2	21	84	7	58	75	2	13	8	1.13
9239942--9239983	20	2.2	20	86	4	59	54	7	9	28	1.59
9242207--9242237	14	2.3	14	94	5	55	0	16	0	83	0.64
9243704--9243750	6	7.7	6	88	4	67	80	0	2	17	0.80
9243704--9243750	13	3.8	13	83	11	55	80	0	2	17	0.80
9245320--9245351	3	10.7	3	100	0	64	34	0	0	65	0.93
9248731--9248763	2	16.5	2	100	0	66	51	0	0	48	1.00
9254868--9254894	3	9.0	3	100	0	54	33	0	0	66	0.92
9254886--9254941	29	2.0	29	85	3	78	10	8	1	78	1.03
9254894--9254950	11	5.5	11	74	16	50	5	12	1	80	0.95
9254900--9254956	19	3.1	18	82	12	62	3	14	0	82	0.80
9254894--9254957	30	2.2	29	86	10	87	4	14	1	79	0.96
9268504--9268640	49	2.8	49	82	5	143	27	12	18	42	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9268620--9268916	44	6.8	44	77	7	255	31	13	13	41	1.84
9268631--9268741	43	2.5	44	82	5	136	31	15	10	42	1.81
9268989--9269022	3	11.0	3	93	6	59	32	0	0	67	0.91
9270072--9270126	22	2.7	21	76	17	53	23	0	7	69	1.14
9271337--9271368	2	16.0	2	100	0	64	50	0	50	0	1.00
9272731--9272773	22	2.0	22	85	0	59	32	6	2	58	1.38
9275860--9275939	40	2.0	41	82	7	101	50	8	3	37	1.52
9276783--9276837	28	2.0	28	92	3	94	60	0	21	18	1.37
9276997--9277040	18	2.4	17	82	14	52	65	0	29	4	1.12
9286102--9286139	19	2.0	19	94	0	67	26	10	7	55	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129