genome.fa.s13.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  99  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17944792--17944831	20	2.0	20	90	0	62	80	0	0	20	0.72
17945661--17945726	9	7.3	9	77	5	53	69	3	3	24	1.16
17945671--17945723	3	17.7	3	86	0	70	66	1	3	28	1.20
17945664--17945722	30	2.0	30	96	0	109	66	3	3	27	1.24
17945761--17945825	26	2.5	26	74	0	67	44	16	15	23	1.86
17951925--17951977	23	2.3	23	83	0	61	37	22	11	28	1.89
17951976--17952009	12	2.8	12	86	0	50	41	20	11	26	1.87
17956400--17956460	17	3.4	18	78	15	72	54	9	4	31	1.55
17956659--17956701	14	3.1	14	78	15	54	69	0	2	27	1.00
17956720--17956757	15	2.4	16	82	4	51	84	2	5	7	0.86
17958043--17958169	43	3.0	43	85	0	164	40	18	19	22	1.92
17958291--17958337	22	2.1	22	84	7	60	25	17	17	40	1.90
17958651--17958733	18	4.7	17	82	10	87	30	16	25	27	1.97
17959104--17959164	22	2.8	22	68	9	52	45	13	11	29	1.78
17959029--17959197	44	3.8	44	77	9	150	44	11	8	35	1.71
17959117--17959290	95	1.8	95	82	4	226	41	13	9	35	1.77
17959197--17959290	45	2.1	45	86	4	127	40	12	10	36	1.78
17959212--17959294	22	3.8	22	75	10	89	38	14	7	39	1.74
17960396--17960434	11	3.6	11	86	3	53	0	10	0	89	0.48
17960397--17960433	19	1.9	19	94	0	65	0	10	0	89	0.49
17960399--17960457	10	6.1	9	76	18	57	5	13	0	81	0.85
17963276--17963325	21	2.3	21	82	3	64	64	12	4	20	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17964549--17964659	20	6.4	16	70	21	57	50	10	6	32	1.62
17964611--17964662	16	2.9	17	80	13	61	46	11	5	36	1.64
17964715--17964771	30	1.9	30	85	3	80	57	12	3	26	1.50
17964874--17964912	18	2.2	18	86	4	53	82	0	5	12	0.83
17969737--17969784	3	16.7	3	82	8	64	33	0	2	64	1.05
17969744--17969785	22	1.9	22	90	0	66	33	0	2	64	1.07
17969735--17969799	31	2.2	29	78	8	69	30	0	7	61	1.24
17970644--17970707	6	10.8	6	80	12	62	18	1	3	76	1.00
17970645--17970706	13	5.4	11	81	12	72	19	1	3	75	1.02
17970644--17970701	18	3.2	17	83	11	71	18	1	3	75	1.03
17970645--17970706	24	2.7	23	83	14	74	19	1	3	75	1.02
17970651--17970733	43	2.0	42	81	11	98	21	4	3	69	1.22
17970812--17970921	54	2.1	55	82	5	136	61	8	5	24	1.45
17971279--17971328	21	2.5	20	90	6	75	42	8	2	48	1.44
17973618--17973648	12	2.6	12	94	0	53	41	25	12	19	1.87
17973676--17973749	15	5.0	14	72	16	51	63	25	0	10	1.27
17973674--17973739	25	2.6	25	79	13	73	62	25	0	12	1.30
17973676--17973724	15	3.3	15	82	5	64	63	24	0	12	1.29
17973705--17973749	10	4.4	10	82	2	54	64	26	0	8	1.23
17973705--17973755	20	2.5	21	87	6	77	60	27	1	9	1.39
17981181--17981226	21	2.1	22	88	4	67	52	2	2	43	1.25
17985700--17985861	78	2.1	78	90	2	254	37	8	23	31	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17990750--17990792	21	2.0	22	86	13	63	55	2	0	41	1.12
17991806--17991841	19	1.9	19	94	5	65	19	5	5	69	1.29
17992782--17992942	48	3.5	47	75	7	134	54	13	6	26	1.62
17994510--17994572	32	2.0	32	93	0	108	28	19	22	30	1.98
17995185--17995244	29	2.0	30	83	3	77	40	6	5	48	1.51
17995899--17995965	16	3.9	16	71	19	55	47	2	0	49	1.16
18002461--18002486	3	8.7	3	100	0	52	30	0	0	69	0.89
18002464--18002522	13	4.4	13	82	8	57	28	3	0	67	1.06
18003335--18003414	27	3.1	25	75	18	74	16	3	5	75	1.13
18006103--18006188	45	1.9	45	87	0	127	44	11	10	33	1.75
18018050--18018079	15	2.1	15	93	6	53	46	26	6	20	1.75
18018734--18019097	183	2.0	183	92	1	613	40	11	13	35	1.80
18019536--18019576	15	2.5	17	81	18	52	29	4	2	63	1.28
18020437--18020510	24	2.8	27	76	14	73	48	4	0	47	1.20
18021332--18021409	29	2.7	29	77	13	72	41	8	0	50	1.34
18021347--18021422	30	2.5	30	81	8	84	43	10	0	46	1.38
18021478--18021552	29	2.6	29	91	4	116	57	4	4	34	1.36
18021907--18021931	2	12.5	2	100	0	50	48	0	0	52	1.00
18023881--18023908	14	2.0	14	100	0	56	14	21	50	14	1.78
18027254--18027566	62	5.0	61	72	12	201	32	14	12	40	1.83
18027259--18027566	124	2.5	123	75	10	279	32	13	12	40	1.83
18027293--18027516	123	1.8	123	81	7	285	33	13	14	39	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18031535--18031581	24	2.0	24	95	0	85	44	10	14	29	1.79
18032603--18032768	64	2.7	62	76	11	169	40	19	12	28	1.87
18034779--18034816	20	2.0	19	85	10	51	47	7	15	28	1.74
18037204--18037469	128	2.1	129	86	1	372	37	5	12	45	1.64
18038199--18038250	25	2.0	26	81	3	61	28	11	5	53	1.60
18039573--18039688	56	2.1	55	78	1	124	35	8	26	29	1.86
18039748--18039948	79	2.5	79	80	4	219	33	13	24	28	1.93
18042224--18042297	28	2.6	27	87	12	105	28	8	24	39	1.84
18043067--18043131	3	21.7	3	93	0	94	67	26	0	6	1.13
18043100--18043189	3	30.0	3	94	0	117	66	6	1	25	1.23
18064869--18064962	31	2.9	32	89	4	145	62	9	1	26	1.32
18065130--18065204	39	1.9	38	94	2	132	49	16	10	24	1.76
18069455--18069526	5	13.2	5	76	13	54	70	9	1	18	1.21
18069455--18069526	11	6.5	11	79	14	69	70	9	1	18	1.21
18070436--18070508	5	15.0	5	75	11	62	71	0	1	27	0.95
18070435--18070507	16	4.2	16	77	17	67	72	0	1	26	0.93
18070970--18071094	66	1.9	66	80	6	146	47	14	20	18	1.83
18071528--18071631	18	5.7	19	73	10	83	44	14	12	28	1.82
18071898--18072205	45	6.9	45	77	6	236	40	17	9	33	1.81
18072005--18072074	24	3.1	22	74	8	70	44	15	5	34	1.71
18072005--18072075	22	3.1	22	76	6	79	45	15	5	33	1.70
18071913--18072205	90	3.3	90	81	5	306	40	17	9	32	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18071895--18072196	135	2.2	136	83	4	364	41	16	9	32	1.81
18077213--18077250	19	2.0	20	84	5	51	42	0	0	57	0.98
18078067--18078110	23	1.9	23	81	9	54	59	20	9	11	1.59
18078363--18078391	8	3.8	8	95	4	51	20	0	0	79	0.74
18089587--18089641	29	1.9	28	88	3	83	41	3	1	52	1.29
18089590--18089724	30	4.5	30	77	4	121	41	7	2	48	1.43
18090093--18090171	39	2.0	39	82	7	97	58	6	10	25	1.54
18092867--18092922	28	2.0	28	89	0	85	23	26	8	41	1.84
18100146--18100325	49	3.6	49	82	5	168	37	11	11	38	1.78
18102567--18102591	12	2.1	12	100	0	50	48	44	0	8	1.32
18102840--18102905	6	10.8	6	74	9	53	28	0	6	65	1.17
18110651--18110688	17	2.2	18	85	4	51	7	2	23	65	1.32
18111135--18111159	7	3.6	7	100	0	50	0	12	0	88	0.53
18113419--18113479	19	3.2	19	77	9	61	45	37	0	16	1.47
18113410--18113497	38	2.3	38	84	5	115	43	38	1	17	1.56
18113431--18113493	19	3.3	19	84	4	74	44	38	0	17	1.49
18113519--18113552	17	1.9	18	88	5	52	47	47	0	5	1.26
18114507--18114578	20	3.5	20	74	10	67	25	5	15	54	1.62
18114627--18114680	24	2.2	25	83	9	76	33	3	18	44	1.67
18116125--18116210	19	4.5	19	86	5	104	45	40	2	11	1.53
18116123--18116210	38	2.3	38	82	9	117	44	40	2	12	1.55
18117234--18117308	20	3.7	19	76	5	60	28	6	13	52	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18117354--18117408	24	2.3	23	81	6	56	34	1	14	49	1.54
18117367--18117406	19	2.1	19	86	9	55	32	0	15	52	1.43
18120320--18121626	160	8.2	160	77	5	985	42	16	9	31	1.80
18120350--18121560	321	3.8	320	78	6	1121	42	16	9	32	1.80
18133470--18133494	9	2.8	9	100	0	50	44	56	0	0	0.99
18142025--18142085	19	3.2	19	77	9	61	45	37	0	16	1.47
18142016--18142103	38	2.3	38	82	5	115	43	37	2	17	1.61
18142037--18142097	19	3.2	19	83	4	70	45	36	0	18	1.49
18143118--18143185	20	3.3	20	72	11	59	26	4	14	54	1.59
18143109--18143188	41	2.0	40	85	11	110	26	3	15	55	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129