genome.fa.s13.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  123  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22338665--22338757	26	4.0	22	77	15	82	63	1	4	31	1.21
22338667--22338895	7	32.7	7	69	22	53	67	2	3	26	1.20
22338820--22338898	31	2.6	31	81	15	94	72	3	0	24	1.01
22338814--22338897	7	11.1	7	78	12	60	72	3	0	23	1.00
22339080--22339291	43	4.9	43	90	4	293	40	20	15	23	1.90
22339080--22339290	85	2.4	85	86	5	289	40	20	15	23	1.90
22340043--22340071	13	2.2	13	100	0	58	41	6	37	13	1.72
22340321--22340372	20	2.6	19	75	16	52	9	5	0	84	0.77
22340351--22340385	15	2.3	15	90	5	52	14	8	0	77	0.99
22350739--22351184	58	7.7	55	79	11	423	37	13	5	43	1.67
22350739--22351178	116	3.8	116	83	7	525	37	13	5	43	1.67
22351202--22351273	5	13.8	5	79	16	60	76	0	6	16	0.99
22351201--22351267	12	5.9	11	76	15	50	74	0	8	16	1.05
22351202--22351276	21	3.6	20	75	19	73	77	0	6	16	0.97
22351202--22351273	11	6.4	11	79	12	67	76	0	6	16	0.99
22351295--22351321	3	9.0	3	100	0	54	66	0	0	33	0.92
22352085--22352247	32	5.0	31	69	20	84	63	2	4	29	1.28
22352163--22352234	14	4.8	14	73	17	56	63	1	4	30	1.21
22352101--22352250	42	3.5	42	78	13	119	62	2	5	30	1.29
22352273--22352390	6	18.7	6	71	13	51	72	3	2	22	1.12
22352341--22352390	7	7.3	7	82	8	50	78	2	0	20	0.86
22352345--22352388	20	2.0	23	87	12	67	77	2	0	20	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22352670--22352709	3	13.3	3	100	0	80	32	0	0	67	0.91
22353137--22353176	19	2.1	19	85	4	53	55	0	7	37	1.29
22361894--22361946	23	2.3	24	78	15	58	35	0	1	62	1.06
22361969--22361993	13	1.9	13	100	0	50	32	20	8	40	1.81
22362337--22362366	9	3.4	9	95	4	53	53	0	0	46	1.00
22364647--22364698	28	2.0	25	85	14	70	11	13	0	75	1.06
22364783--22364808	2	13.0	2	100	0	52	50	0	0	50	1.00
22365213--22365244	15	2.1	15	94	0	55	12	3	0	84	0.74
22365213--22365246	8	4.4	8	88	7	52	14	2	0	82	0.79
22365737--22365796	3	20.3	3	93	3	104	33	0	1	65	1.03
22375751--22375828	41	1.9	41	92	5	131	21	10	28	39	1.86
22382391--22382452	21	2.9	22	82	4	81	45	1	0	53	1.10
22386833--22386863	16	1.9	16	93	0	53	35	0	0	64	0.94
22387053--22387096	22	2.0	23	81	4	54	45	13	4	36	1.64
22387092--22387127	14	2.6	14	86	4	56	50	5	2	41	1.40
22387183--22387223	21	1.9	22	90	5	66	58	2	4	34	1.32
22391802--22391831	14	2.1	14	100	0	60	40	0	6	53	1.27
22393088--22393134	16	2.9	16	84	6	51	63	0	0	36	0.94
22393574--22393625	7	7.6	7	91	4	88	42	0	0	57	0.98
22393574--22393623	20	2.5	20	93	3	82	42	0	0	58	0.98
22394884--22394955	21	3.3	21	84	7	90	55	0	0	44	0.99
22394925--22394971	16	2.9	16	84	6	51	63	0	0	36	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22395402--22395450	22	2.3	21	78	3	53	59	0	4	36	1.17
22395881--22395905	13	1.9	13	100	0	50	40	0	0	60	0.97
22395899--22395941	21	2.0	21	86	8	61	65	0	4	30	1.13
22395971--22396026	11	4.8	11	72	20	51	46	0	1	51	1.11
22395965--22396014	21	2.3	23	82	6	59	50	0	2	48	1.12
22397748--22397844	47	2.0	47	80	7	106	52	0	1	46	1.07
22398474--22398501	12	2.3	12	100	0	56	35	0	0	64	0.94
22407685--22407721	12	3.0	12	84	7	56	86	8	2	2	0.76
22413514--22413578	25	2.6	25	79	15	71	53	0	0	46	1.00
22413717--22414035	77	4.2	77	72	14	216	41	2	1	55	1.20
22413734--22414019	100	2.7	104	80	13	245	41	2	1	55	1.20
22413671--22414071	189	2.1	184	78	14	412	40	2	1	55	1.23
22413722--22414155	122	3.5	121	78	14	351	41	2	1	55	1.20
22413716--22414158	18	25.4	18	67	21	182	40	2	1	55	1.21
22414057--22414158	23	4.4	23	76	14	102	42	1	0	54	1.18
22414676--22414730	28	2.0	28	85	7	76	43	7	12	36	1.71
22415395--22415455	26	2.3	27	83	8	72	52	3	11	32	1.54
22417091--22417134	18	2.4	18	88	0	61	61	2	0	36	1.09
22426791--22427148	199	1.8	198	91	0	599	41	24	12	22	1.87
22436419--22436443	2	12.5	2	100	0	50	48	0	0	52	1.00
22436734--22436779	20	2.2	21	88	3	67	45	8	0	45	1.34
22438142--22438167	9	2.9	9	100	0	52	11	11	30	46	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22444150--22444174	13	1.9	13	100	0	50	56	0	0	44	0.99
22444153--22444210	23	2.6	22	78	10	73	58	1	1	37	1.18
22452508--22452588	20	3.8	21	73	14	58	35	2	1	60	1.18
22452530--22452592	23	2.8	24	73	26	66	33	3	1	61	1.21
22452977--22453095	63	1.9	63	81	13	147	47	1	0	50	1.17
22460411--22460442	2	16.0	2	100	0	64	50	0	0	50	1.00
22469485--22469649	82	2.0	82	96	2	305	41	22	8	27	1.82
22473401--22473467	32	2.1	33	94	2	118	37	4	2	55	1.36
22487221--22487277	29	1.9	30	92	3	98	57	3	3	35	1.33
22488653--22488688	12	3.0	12	88	11	56	61	0	0	38	0.96
22488658--22488689	13	2.4	14	85	15	50	68	0	0	31	0.90
22492014--22492046	7	4.7	7	100	0	66	15	60	12	12	1.59
22492695--22492746	24	2.2	22	83	16	61	38	1	1	57	1.21
22495845--22495895	26	2.0	26	84	7	68	52	0	0	47	1.00
22503599--22503644	24	1.9	24	83	16	60	58	2	6	32	1.36
22511998--22512032	2	17.5	2	100	0	70	51	0	48	0	1.00
22512951--22513007	29	2.0	28	83	10	71	54	0	0	45	0.99
22513804--22513847	21	2.1	21	83	8	54	54	0	0	45	0.99
22518133--22518204	31	2.4	31	90	2	110	38	5	2	52	1.39
22518537--22518570	16	2.1	17	88	5	52	55	0	0	44	0.99
22520361--22520419	27	2.2	27	79	11	68	52	1	1	44	1.21
22528333--22528366	13	2.6	13	85	0	50	41	0	5	52	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22528379--22528414	18	2.0	18	88	0	54	50	0	0	50	1.00
22528384--22528425	18	2.3	18	83	4	57	50	0	0	50	1.00
22531927--22531967	20	2.0	20	86	9	57	31	2	0	65	1.05
22533383--22533461	33	2.5	32	82	8	90	43	0	2	54	1.14
22533511--22533578	27	2.6	26	76	15	77	39	5	0	54	1.25
22533809--22533892	32	2.8	29	77	12	80	47	0	0	52	1.00
22534112--22534156	2	22.5	2	95	0	81	48	0	0	51	1.00
22536188--22536230	21	2.0	21	82	13	52	65	0	4	30	1.13
22536296--22536344	20	2.4	20	80	10	55	65	2	0	32	1.04
22536791--22536867	19	3.9	19	72	5	55	45	1	1	51	1.17
22536969--22537025	21	2.7	22	82	15	75	49	0	0	50	1.00
22537627--22537686	23	2.5	24	67	8	59	38	1	6	53	1.37
22537674--22537755	18	4.7	18	67	19	57	56	1	0	42	1.07
22537681--22537797	44	2.7	43	83	13	136	53	1	0	44	1.10
22537860--22537914	22	2.4	23	82	8	60	63	3	0	32	1.12
22537936--22537989	17	3.4	17	70	10	51	53	1	0	44	1.11
22537935--22537982	22	2.1	22	84	3	60	52	2	0	45	1.12
22538496--22538532	14	2.8	14	84	8	51	64	0	0	35	0.94
22538496--22538534	13	3.0	13	82	10	53	61	0	0	38	0.96
22538840--22538882	11	3.9	11	87	0	68	18	0	9	72	1.11
22538845--22538895	22	2.3	22	83	6	59	27	0	5	66	1.14
22538932--22538988	20	2.8	21	78	10	64	31	5	7	56	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22538957--22539024	25	2.7	25	77	13	77	33	2	2	60	1.27
22538958--22539018	15	4.2	13	77	22	52	32	1	3	62	1.21
22538980--22539018	14	2.7	15	88	4	62	33	0	0	66	0.92
22539374--22539410	2	18.5	2	88	0	56	43	2	0	54	1.14
22540100--22540134	2	17.5	2	100	0	70	51	0	48	0	1.00
22540266--22540306	20	2.0	20	86	9	57	51	2	2	43	1.28
22540275--22540317	18	2.3	18	84	11	52	58	2	0	39	1.11
22541507--22541595	32	2.9	31	78	8	92	60	5	0	33	1.20
22563975--22564021	21	2.2	21	88	3	67	40	14	0	44	1.46
22577991--22578034	22	1.9	24	86	9	65	50	0	4	45	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129