genome.fa.s13.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  106  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19107094--19107144	26	2.0	26	88	0	75	60	7	3	27	1.42
19110303--19110398	25	3.9	26	71	16	87	38	1	0	60	1.04
19110333--19110381	13	3.8	13	81	5	64	32	0	0	67	0.91
19110339--19110405	25	2.8	24	75	13	66	29	1	0	68	0.98
19113501--19113537	19	2.0	18	89	5	56	45	0	2	51	1.15
19113894--19113938	14	3.2	13	84	12	54	48	0	2	48	1.13
19114170--19114207	15	2.4	16	82	4	51	42	0	10	47	1.38
19115657--19115704	26	1.9	25	87	8	71	77	4	0	18	0.93
19116131--19116168	3	12.7	3	88	0	58	31	2	2	63	1.22
19116525--19116571	2	24.0	2	91	4	78	48	2	0	48	1.13
19117540--19117567	2	14.0	2	100	0	56	50	0	0	50	1.00
19118135--19118168	16	2.1	16	89	10	52	64	0	2	32	1.08
19118135--19118168	17	2.1	16	88	5	50	64	0	2	32	1.08
19119151--19119235	29	3.0	28	86	10	111	54	1	0	44	1.07
19119267--19119342	29	2.6	28	89	6	116	52	3	1	42	1.28
19122660--19122685	3	8.7	3	100	0	52	30	0	0	69	0.89
19134496--19134527	16	2.0	16	100	0	64	37	18	25	18	1.94
19136842--19136885	17	2.6	18	86	10	58	45	0	2	52	1.13
19137338--19137379	13	3.1	14	80	12	52	50	2	0	47	1.14
19137337--19137386	15	3.4	15	78	13	59	48	2	0	50	1.12
19137905--19138062	80	2.0	81	83	6	205	34	8	21	35	1.85
19139047--19139128	31	2.6	31	90	0	128	37	15	10	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19145515--19145554	9	3.9	10	84	15	55	0	10	2	87	0.63
19147660--19147686	14	1.9	14	100	0	54	88	0	0	11	0.50
19149516--19149571	30	1.9	30	85	7	80	51	0	3	44	1.18
19150006--19150036	16	1.9	16	93	0	53	38	0	0	61	0.96
19152415--19152701	153	1.9	153	86	2	416	42	8	10	38	1.69
19155144--19155202	29	2.0	29	93	0	100	20	23	18	37	1.94
19157301--19157369	30	2.2	33	85	14	94	69	0	10	20	1.17
19160863--19161091	66	3.7	62	79	10	211	34	12	4	48	1.62
19160902--19161157	66	3.9	66	76	14	197	33	11	6	48	1.64
19160977--19161100	59	2.1	58	88	5	180	37	10	6	45	1.64
19160971--19161105	58	2.3	56	86	8	189	34	10	5	48	1.62
19161022--19161178	72	2.2	73	85	5	214	37	8	5	49	1.55
19161141--19161373	63	3.7	60	72	18	179	39	9	3	48	1.51
19161103--19161217	58	2.0	58	84	6	153	39	10	5	45	1.61
19161156--19161286	70	1.9	70	87	6	194	41	9	2	45	1.50
19161240--19161373	63	2.1	63	87	4	191	36	8	3	50	1.52
19161447--19161490	3	14.7	3	100	0	88	68	0	0	31	0.90
19161860--19161923	11	5.7	11	75	10	58	56	14	1	28	1.47
19162561--19163057	44	11.3	44	84	1	541	47	18	10	24	1.79
19162548--19163057	132	3.9	132	84	2	598	46	18	10	24	1.80
19164017--19164063	20	2.3	21	82	10	62	10	6	0	82	0.82
19171294--19171323	15	2.0	15	93	0	51	53	3	20	23	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19173571--19173994	59	7.2	58	83	7	500	34	12	8	44	1.72
19173994--19174055	12	5.3	11	73	21	54	80	0	4	14	0.87
19174004--19174055	25	2.0	26	89	10	81	80	0	5	13	0.88
19174078--19174112	16	2.2	16	94	0	61	65	0	0	34	0.93
19174079--19174112	12	2.8	12	86	0	50	67	0	0	32	0.91
19175222--19175262	20	2.0	21	90	4	66	24	24	26	24	2.00
19175369--19175399	8	3.9	8	95	0	53	3	0	6	90	0.55
19175355--19175402	21	2.4	20	89	6	71	4	0	8	87	0.66
19175410--19175622	41	5.1	41	89	2	309	35	23	17	23	1.95
19175410--19175622	83	2.6	83	90	1	320	35	23	17	23	1.95
19180798--19180840	19	2.1	21	87	8	63	67	0	6	25	1.15
19180798--19180840	20	2.2	20	87	8	61	67	0	6	25	1.15
19183661--19183693	3	11.0	3	100	0	66	66	0	0	33	0.92
19184345--19184570	60	3.8	59	82	9	251	35	11	5	47	1.63
19184337--19184590	63	4.3	57	79	13	246	35	9	6	48	1.62
19184572--19184846	60	4.5	59	78	15	249	36	9	4	49	1.55
19184913--19184938	3	8.7	3	100	0	52	69	0	0	30	0.89
19186015--19186505	44	11.2	44	82	2	513	46	18	11	24	1.81
19186015--19186505	175	2.8	171	81	6	574	46	18	11	24	1.81
19187465--19187521	19	3.1	19	80	14	66	8	14	0	77	0.99
19187468--19187524	20	2.9	20	77	20	66	8	14	0	77	0.99
19194774--19194803	15	2.0	15	93	0	51	53	3	20	23	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19198011--19198247	60	4.0	59	81	7	248	37	10	4	47	1.58
19198118--19198422	135	2.4	135	81	9	343	38	10	4	46	1.59
19198244--19198519	63	4.5	62	80	9	287	38	8	5	47	1.56
19198244--19198519	125	2.2	124	85	7	364	38	8	5	47	1.56
19198612--19198649	4	9.5	4	100	0	76	76	0	0	23	0.79
19199151--19199176	11	2.4	11	100	0	52	53	23	0	23	1.46
19199246--19199279	11	3.1	11	91	0	50	8	20	2	67	1.31
19200449--19200480	16	1.9	17	93	6	57	25	15	6	53	1.65
19202685--19202726	21	2.0	22	86	13	61	26	19	7	47	1.74
19203543--19203599	22	2.4	24	88	11	82	49	0	0	50	1.00
19210613--19210643	3	10.3	3	100	0	62	35	0	0	64	0.94
19211342--19211397	27	2.1	27	83	6	69	53	0	1	44	1.11
19211380--19211442	19	3.5	19	77	10	53	57	1	0	41	1.08
19211763--19211802	2	20.5	2	94	5	73	50	0	0	50	1.00
19211766--19211799	17	2.0	17	100	0	68	52	0	0	47	1.00
19212472--19212555	19	4.2	19	75	15	71	59	2	3	34	1.28
19212472--19212555	20	4.2	21	76	7	68	59	2	3	34	1.28
19212887--19212953	23	2.7	25	79	18	70	43	0	0	56	0.99
19212886--19212963	31	2.6	29	81	16	95	42	0	0	57	0.98
19212925--19212985	14	4.3	14	76	16	54	37	1	1	59	1.17
19213665--19213701	15	2.6	14	87	8	56	27	2	0	70	1.01
19215629--19215707	25	3.3	26	71	18	71	45	0	5	49	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19215624--19215699	23	3.3	24	72	20	72	48	0	3	47	1.20
19215624--19215731	47	2.3	46	81	10	119	48	0	4	47	1.22
19215827--19215882	21	2.6	21	81	18	71	50	1	0	48	1.11
19219321--19219371	23	2.3	22	82	3	66	54	0	0	45	0.99
19219321--19219373	22	2.3	23	77	3	63	56	0	0	43	0.99
19222245--19222285	12	2.9	14	79	20	50	58	0	0	41	0.98
19222654--19222721	20	3.2	21	79	6	75	32	4	2	60	1.32
19222701--19222739	11	3.2	12	85	10	53	38	2	0	58	1.12
19222645--19222729	20	4.2	19	70	16	55	35	3	2	58	1.28
19223322--19223358	17	2.2	17	90	0	56	40	0	0	59	0.97
19223322--19223358	8	4.3	9	86	10	51	40	0	0	59	0.97
19223320--19223359	15	2.7	15	88	7	55	40	0	0	60	0.97
19223405--19223430	2	13.0	2	100	0	52	50	0	0	50	1.00
19223750--19223802	19	2.8	19	82	5	63	43	0	1	54	1.11
19231582--19231633	19	2.7	20	85	11	72	51	0	0	48	1.00
19232453--19232493	21	1.9	22	85	14	59	48	7	14	29	1.71
19235625--19235657	17	2.0	17	88	5	50	27	0	3	69	1.03
19236029--19236054	11	2.4	11	100	0	52	23	0	23	53	1.46
19236100--19236142	19	2.2	20	84	12	54	23	13	20	41	1.88
19236257--19236298	15	2.5	17	85	14	52	54	0	42	2	1.13
19236257--19236296	19	2.1	19	86	9	55	57	0	40	2	1.12
19236667--19237175	63	8.2	60	77	11	465	48	4	8	37	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19236934--19237175	60	4.1	58	79	9	226	48	4	9	37	1.56
19236972--19237175	60	3.4	60	86	2	259	48	4	9	37	1.55
19243302--19243518	58	3.7	60	82	9	234	37	11	4	47	1.58
19243530--19243803	62	4.4	60	80	11	288	38	8	5	47	1.57
19243878--19243911	3	10.7	3	93	6	50	70	0	0	29	0.87
19243896--19243932	4	9.5	4	94	5	67	75	0	0	24	0.80
19244434--19244459	11	2.4	11	100	0	52	53	23	0	23	1.46
19244529--19244562	11	3.1	11	91	0	50	8	20	2	67	1.31
19245731--19245762	16	1.9	17	93	6	57	25	15	6	53	1.65
19247958--19247999	21	2.0	22	86	13	61	26	19	7	47	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129