genome.fa.s13.2.7.7.80.10.50.1000.55.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  55  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10732538--10732607	20	3.5	20	75	14	81	32	5	15	45	1.70
10732537--10732615	40	2.0	40	92	5	133	32	5	13	48	1.65
10732618--10732705	13	7.0	13	66	21	53	29	6	12	51	1.65
10732598--10732704	47	2.2	48	83	1	135	28	6	13	51	1.65
10732641--10732680	20	2.0	21	90	5	64	30	5	10	55	1.54
10732625--10732692	34	2.0	34	82	5	84	30	5	10	52	1.59
10732729--10732811	20	4.2	20	74	10	73	31	7	13	48	1.69
10733361--10733465	54	1.9	54	90	0	165	50	23	11	14	1.75
10736436--10736481	22	2.1	22	91	0	74	52	2	19	26	1.58
10737788--10737816	14	2.1	14	100	0	58	20	6	6	65	1.40
10741650--10741751	51	2.0	51	84	0	132	41	4	1	51	1.34
10741666--10741774	51	2.1	51	80	6	114	41	4	1	52	1.33
10741738--10741786	23	2.2	21	78	7	53	48	4	0	46	1.20
10744498--10744536	16	2.6	16	88	8	55	61	0	2	35	1.10
10745438--10745584	78	1.9	76	83	6	188	23	19	9	47	1.78
10748662--10748715	15	3.5	15	80	9	63	14	14	0	70	1.17
10748663--10748719	16	3.6	16	81	6	62	14	15	0	70	1.18
10751728--10751802	12	5.8	13	68	23	52	42	0	2	54	1.14
10752394--10752453	30	2.0	30	100	0	120	43	10	3	43	1.54
10752394--10752443	17	3.2	17	67	21	54	46	10	4	40	1.56
10753491--10753524	11	3.1	11	91	0	50	58	2	2	35	1.28
10754107--10754168	19	3.4	18	78	10	63	67	8	1	22	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10754081--10754185	27	3.8	27	73	14	81	69	6	1	21	1.21
10754120--10754190	9	7.6	9	79	6	70	67	4	2	25	1.22
10754223--10754286	25	2.5	26	82	10	78	65	6	3	25	1.31
10754203--10754299	17	5.6	16	69	12	59	64	7	2	25	1.30
10756109--10756181	18	3.7	21	73	14	59	26	2	5	65	1.27
10756145--10756191	18	2.6	17	87	9	67	27	4	2	65	1.22
10756065--10756191	10	13.4	9	68	20	55	28	2	7	62	1.34
10758833--10758875	22	2.0	22	86	9	61	58	6	11	23	1.57
10764175--10764239	9	7.4	9	74	19	57	44	1	7	46	1.41
10764177--10764252	27	2.8	26	84	7	91	44	2	7	44	1.47
10765357--10765419	31	2.0	31	87	0	90	33	6	15	44	1.72
10765615--10765745	66	2.0	66	85	5	176	44	6	6	41	1.58
10766112--10766152	20	2.0	20	85	0	55	48	4	0	46	1.23
10766641--10766669	2	14.5	2	100	0	58	51	0	0	48	1.00
10769196--10769256	30	2.0	30	87	0	86	24	14	27	32	1.95
10771218--10771293	26	2.9	27	84	2	100	32	14	14	38	1.87
10777028--10777056	2	14.5	2	100	0	58	48	0	0	51	1.00
10778517--10778566	24	2.1	24	85	7	66	48	4	4	44	1.40
10779083--10779167	44	1.9	45	80	7	102	42	4	1	51	1.30
10779278--10779318	17	2.6	16	85	11	57	56	0	0	43	0.99
10788058--10788088	15	2.1	15	93	0	53	12	3	0	83	0.75
10788050--10788092	22	1.9	23	90	4	70	9	4	2	83	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10788172--10788219	18	2.9	16	81	9	60	77	2	4	16	1.03
10789122--10789151	8	3.8	8	95	0	51	60	0	3	36	1.14
10790125--10790336	86	2.5	84	81	9	241	39	12	16	32	1.85
10791824--10791871	18	2.6	18	86	3	69	6	8	2	83	0.88
10795640--10795714	12	5.9	12	69	17	53	73	4	4	18	1.15
10795641--10795714	19	3.8	19	73	19	55	74	4	4	17	1.13
10796568--10796712	3	50.7	3	74	16	121	59	2	2	35	1.24
10796568--10796714	18	8.9	17	79	10	139	59	2	2	36	1.23
10799662--10799756	48	2.0	48	81	4	111	42	11	16	29	1.84
10810821--10810857	6	6.2	6	100	0	74	0	51	0	48	1.00
10811971--10812214	121	2.0	120	90	2	382	22	17	11	48	1.79
10815445--10815493	3	16.7	3	91	4	82	67	2	0	30	1.02
10825080--10825113	9	3.7	9	88	4	50	41	8	29	20	1.82
10828444--10828473	15	2.0	15	93	0	51	40	10	16	33	1.82
10830825--10830880	24	2.3	24	87	0	76	26	23	1	48	1.61
10833804--10833849	23	2.0	24	84	16	62	65	2	6	26	1.28
10833804--10833849	24	2.0	22	83	8	56	65	2	6	26	1.28
10841473--10841505	16	2.0	17	88	5	50	30	6	3	60	1.36
10841567--10841614	14	3.4	14	91	0	69	41	16	12	29	1.85
10845548--10845606	3	19.7	3	100	0	118	67	0	0	32	0.91
10855836--10855872	6	6.2	6	100	0	74	0	51	0	48	1.00
10856988--10857231	121	2.0	120	90	2	382	22	17	11	48	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10858741--10858795	27	2.0	27	82	0	65	72	9	9	9	1.28
10860459--10860508	3	16.7	3	95	0	91	68	2	0	30	1.01
10868271--10868549	138	2.0	138	92	1	470	33	18	16	30	1.94
10872710--10872740	16	1.9	16	100	0	62	61	6	0	32	1.21
10872887--10872917	3	10.7	3	93	6	55	70	0	0	29	0.87
10872920--10872951	3	10.7	3	100	0	64	34	0	31	34	1.58
10872970--10873022	23	2.4	22	81	12	63	73	1	9	15	1.17
10872965--10873005	17	2.5	17	88	4	57	70	2	7	19	1.22
10872981--10873023	23	1.9	23	90	4	70	79	0	9	11	0.95
10873750--10873780	3	10.3	3	100	0	62	67	0	0	32	0.91
10875918--10875952	11	3.1	11	84	8	52	8	5	20	65	1.40
10875918--10875963	23	2.0	23	86	0	65	8	6	21	63	1.46
10876017--10876084	23	2.9	23	77	2	73	11	8	16	63	1.52
10876715--10876750	17	2.2	17	90	5	56	55	11	5	27	1.57
10877455--10877517	12	5.2	12	74	0	54	33	3	30	33	1.74
10877455--10877513	24	2.5	24	80	0	64	35	3	30	30	1.74
10880225--10880316	42	2.2	43	88	3	134	17	27	8	46	1.77
10880896--10880943	14	2.9	18	70	23	50	27	8	8	56	1.57
10880866--10880943	32	2.4	32	86	0	102	25	7	7	58	1.52
10890490--10890520	15	2.1	14	94	5	53	41	0	0	58	0.98
10892204--10892332	67	1.9	67	87	3	188	42	14	10	31	1.80
10894710--10894802	30	3.1	30	80	7	93	23	15	24	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10898652--10898884	125	1.9	126	91	0	387	33	11	12	42	1.78
10900801--10900852	22	2.4	22	80	6	61	80	1	0	17	0.80
10900815--10900848	17	1.9	18	88	5	52	79	0	0	20	0.73
10900801--10900850	10	4.8	10	80	7	55	80	2	0	18	0.82
10901538--10901598	13	5.2	12	75	15	56	73	8	0	18	1.07
10901843--10902097	43	6.0	41	82	5	235	45	17	13	23	1.84
10901866--10902096	86	2.7	85	81	4	259	47	15	13	23	1.81
10902475--10902528	21	2.5	22	82	8	76	33	18	11	37	1.86
10902845--10902888	23	1.9	23	86	9	63	27	25	4	43	1.74
10903689--10903725	1	37.0	1	88	0	56	0	5	0	94	0.30
10903681--10903730	14	3.5	15	86	13	70	2	10	0	88	0.61
10903681--10903725	13	3.5	13	96	0	81	0	8	0	91	0.43
10903681--10903732	13	3.6	14	89	10	79	1	9	0	88	0.59
10908532--10908707	65	2.8	61	76	11	147	33	11	13	42	1.79
10908714--10908853	60	2.3	61	80	4	160	40	16	15	27	1.89
10908628--10909047	182	2.3	181	83	4	506	38	13	15	33	1.85
10909500--10909568	34	2.1	34	86	2	95	20	18	17	43	1.88
10914404--10914434	14	2.1	15	94	5	55	35	6	0	58	1.24
10914516--10914549	15	2.3	15	95	5	61	35	5	0	58	1.22
10918930--10919821	357	2.5	356	84	2	1152	37	15	11	35	1.83
10922878--10922920	21	2.0	21	81	0	50	46	25	13	13	1.81
10932936--10932966	2	16.0	2	93	6	55	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10940220--10940261	2	21.5	2	95	4	77	52	0	0	47	1.00
10941413--10941451	20	2.0	19	90	5	60	30	0	0	69	0.89
10941472--10941554	39	2.1	39	97	0	157	43	21	2	32	1.66
10943740--10943764	13	1.9	13	100	0	50	52	0	8	40	1.31
10946543--10946590	21	2.3	20	79	13	53	43	0	16	39	1.48
10949128--10949183	27	2.1	27	96	0	103	32	8	16	42	1.79
10961364--10961426	23	2.8	23	81	9	69	23	0	25	50	1.49
10961363--10961399	15	2.4	16	91	8	60	21	0	24	54	1.45
10961572--10961659	28	3.1	27	72	15	72	17	1	26	55	1.48
10961684--10961747	24	2.8	24	74	23	66	20	0	25	54	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129