genome.fa.s13.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  111  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19980843--19980939	39	2.5	39	83	11	110	56	8	0	35	1.29
19980989--19981037	19	2.5	19	86	3	62	53	4	0	42	1.20
19981070--19981122	27	2.0	27	85	7	72	56	1	0	41	1.10
19981110--19981138	12	2.5	12	94	5	51	79	0	0	20	0.74
19981161--19981244	30	2.8	29	77	12	89	55	5	1	36	1.32
19981156--19981252	10	9.7	10	69	4	61	52	5	1	41	1.30
19981308--19981341	17	1.9	18	88	5	52	41	5	5	47	1.52
19981375--19981423	17	2.8	17	84	9	55	77	6	2	14	1.05
19981605--19981653	18	2.7	18	84	9	64	36	2	4	57	1.30
19981604--19981666	19	3.4	18	80	10	65	41	1	3	53	1.26
19981720--19981763	19	2.3	19	84	4	52	31	0	6	61	1.22
19981857--19981893	10	3.8	10	89	10	51	43	0	2	54	1.14
19981859--19982023	40	4.2	40	65	16	101	36	1	5	56	1.33
19981840--19982059	119	1.9	116	80	10	263	35	2	5	56	1.35
19982339--19982367	13	2.1	14	93	6	51	62	0	3	34	1.12
19984009--19984046	3	12.7	3	100	0	76	31	0	0	68	0.90
19988660--19988713	26	2.2	24	81	18	60	68	3	3	24	1.22
19990223--19990294	29	2.5	27	84	11	81	37	8	4	50	1.52
19990245--19990303	29	2.0	29	81	12	68	38	5	3	52	1.40
19990223--19990360	30	4.7	29	79	13	115	40	6	2	50	1.40
19990378--19990447	28	2.5	28	90	4	106	61	0	1	37	1.05
19990403--19990459	28	2.0	28	82	0	69	63	3	1	31	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19992545--19992581	19	1.9	19	94	0	65	56	5	10	27	1.55
19994082--19994222	66	2.1	66	81	8	162	46	6	4	41	1.51
19994264--19994338	37	2.0	37	89	5	116	45	4	0	50	1.20
19994669--19994698	16	1.9	16	93	6	53	26	10	0	63	1.26
20004947--20005302	189	1.9	191	79	8	404	39	9	5	46	1.58
20005238--20005302	26	2.6	27	76	11	75	43	10	3	43	1.55
20005330--20005367	20	1.9	20	84	10	51	21	2	0	76	0.91
20006498--20006936	43	10.3	43	79	6	261	43	18	12	25	1.85
20006487--20006879	170	2.3	168	79	5	391	41	19	12	25	1.87
20006675--20006914	125	1.9	129	82	3	308	42	20	13	24	1.88
20007036--20007067	15	2.1	15	94	0	55	50	21	3	25	1.64
20007328--20007520	44	4.4	44	77	11	175	36	16	10	36	1.83
20007448--20007538	42	2.2	41	84	7	112	36	19	10	32	1.87
20007399--20007674	108	2.6	107	79	8	333	36	17	12	34	1.87
20007762--20007824	22	2.9	22	83	2	74	41	15	4	38	1.69
20008888--20008955	26	2.6	25	81	6	82	8	11	0	79	0.94
20008915--20008950	15	2.4	15	90	0	54	8	5	0	86	0.72
20008895--20008935	19	2.2	19	86	4	57	4	14	0	80	0.87
20008914--20008951	8	4.9	8	83	6	51	7	5	0	86	0.69
20013273--20013313	15	2.7	15	88	0	55	17	2	24	56	1.53
20013419--20013485	21	3.1	21	78	4	71	14	0	32	52	1.43
20013437--20013580	7	19.9	7	66	9	65	18	1	33	46	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20013419--20013559	30	4.8	30	84	7	173	17	1	32	48	1.55
20013417--20013575	14	11.0	14	71	14	117	18	1	31	48	1.56
20013663--20013726	29	2.2	29	83	8	76	20	4	29	45	1.71
20013619--20013733	29	4.0	29	70	9	74	19	3	31	46	1.66
20013825--20013891	25	2.6	26	75	20	70	41	1	1	55	1.18
20013873--20013906	12	2.8	12	90	0	50	47	0	0	52	1.00
20014079--20014124	3	15.0	3	86	4	65	34	4	0	60	1.16
20014291--20014842	184	3.0	184	86	0	701	26	17	24	30	1.97
20016136--20016179	22	2.0	22	86	8	63	36	9	15	38	1.80
20016174--20016247	22	3.4	22	75	7	69	29	16	22	31	1.96
20016334--20016387	22	2.5	22	82	11	74	29	14	24	31	1.95
20016242--20016509	132	2.0	132	84	0	347	39	16	18	25	1.91
20016466--20016509	22	2.0	22	95	0	79	31	20	22	25	1.98
20016362--20016602	110	2.2	110	83	1	295	41	14	18	25	1.88
20016576--20016624	22	2.2	22	85	0	62	46	14	10	28	1.77
20016997--20017052	22	2.5	22	82	0	67	30	17	21	30	1.96
20017400--20017654	121	2.1	118	82	5	309	27	15	18	39	1.90
20019039--20019098	22	2.7	22	84	5	77	6	8	3	81	0.96
20019058--20019098	11	3.7	11	90	0	64	2	9	4	82	0.89
20023901--20023926	12	2.2	12	100	0	52	0	7	7	84	0.77
20025750--20025790	15	2.7	15	92	0	64	19	0	24	56	1.42
20025764--20025812	22	2.3	21	86	6	71	14	0	34	51	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20025785--20025853	28	2.4	28	74	9	77	17	2	28	50	1.60
20025886--20025919	14	2.4	14	90	0	50	11	0	29	58	1.33
20025895--20025958	29	2.2	30	83	8	87	17	0	29	53	1.44
20025917--20025970	21	2.5	21	82	8	56	20	1	27	50	1.59
20025946--20026093	14	10.1	14	72	14	95	21	2	30	45	1.66
20025976--20026072	29	3.3	29	76	12	101	21	3	28	46	1.66
20025946--20026072	59	2.2	58	84	7	159	22	3	29	45	1.67
20026049--20026089	7	5.9	7	82	0	55	19	0	34	46	1.50
20026111--20026191	28	2.9	27	78	12	74	23	1	32	43	1.62
20026068--20026254	29	6.4	28	69	14	110	22	2	32	42	1.67
20026606--20026651	3	15.0	3	81	4	56	32	4	2	60	1.28
20028748--20028778	16	1.9	16	93	0	53	22	3	0	74	0.96
20029336--20029384	4	12.2	4	82	8	64	73	4	0	22	1.00
20030267--20030297	2	15.5	2	100	0	62	51	0	0	48	1.00
20036195--20036224	10	3.1	10	95	4	53	36	0	0	63	0.95
20036197--20036226	9	3.2	9	95	4	51	36	0	0	63	0.95
20037564--20037601	2	19.0	2	88	0	58	50	0	0	50	1.00
20037560--20037598	12	3.2	12	88	0	60	53	0	0	46	1.00
20038919--20038966	25	2.0	24	84	12	62	27	18	14	39	1.90
20051421--20051466	4	11.5	4	85	0	56	47	17	2	32	1.60
20051425--20051466	16	2.6	16	88	0	66	47	16	2	33	1.60
20051800--20051850	8	6.4	8	82	8	68	23	1	1	72	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20051780--20051849	25	2.8	24	81	10	79	21	2	1	74	1.03
20051901--20051931	15	2.1	15	93	0	53	3	6	3	87	0.75
20052402--20052448	19	2.6	18	83	9	60	31	2	0	65	1.04
20052701--20052759	30	1.9	31	82	3	75	67	1	5	25	1.20
20058701--20058744	21	2.1	21	83	8	54	50	18	11	20	1.77
20059031--20059089	24	2.5	24	82	0	82	27	25	5	42	1.76
20060044--20060097	28	1.9	28	85	7	74	55	7	9	27	1.58
20060114--20060143	15	2.0	15	100	0	60	53	0	0	46	1.00
20065124--20065166	21	2.1	20	86	4	59	79	0	18	2	0.85
20066768--20067100	121	2.8	120	73	5	312	18	23	12	44	1.85
20067170--20067259	37	2.4	37	83	7	112	20	17	11	51	1.75
20067506--20067541	3	12.0	3	100	0	72	33	0	0	66	0.92
20068030--20068094	12	5.9	12	68	24	54	30	6	12	50	1.64
20068317--20068387	15	4.7	15	73	16	58	18	5	1	74	1.08
20068325--20068381	30	1.9	30	82	13	73	19	5	1	73	1.11
20068641--20068666	13	2.0	13	100	0	52	84	0	0	15	0.62
20069438--20069491	23	2.4	23	81	9	67	20	9	7	62	1.48
20069436--20069491	24	2.4	23	77	14	62	19	8	7	64	1.45
20074541--20074572	12	2.6	13	85	14	50	46	6	18	28	1.73
20082950--20082982	2	16.5	2	100	0	66	48	0	0	51	1.00
20084375--20084406	2	16.0	2	93	0	55	46	3	0	50	1.17
20086584--20086647	3	21.3	3	100	0	128	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20087481--20087528	18	2.7	18	83	6	53	18	4	4	72	1.17
20088485--20088514	15	1.9	16	93	6	53	13	20	0	66	1.24
20099708--20099816	3	36.0	3	81	9	96	30	5	1	62	1.28
20099755--20099816	25	2.5	25	89	0	106	29	0	0	70	0.87
20099755--20099827	25	2.8	28	83	12	100	26	0	0	73	0.83
20099759--20099830	6	11.3	6	81	14	65	23	0	0	76	0.79
20100619--20100684	6	10.7	6	75	12	53	18	4	0	77	0.94
20100627--20100684	13	4.8	12	74	23	50	18	3	0	77	0.91
20100626--20100688	30	2.1	30	88	5	92	19	3	0	77	0.90
20102812--20102851	19	2.1	19	86	9	55	75	0	2	22	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129