genome.fa.s13.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  94  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16832770--16832803	17	2.0	17	88	11	52	8	5	14	70	1.31
16833674--16833709	14	2.6	14	90	0	63	77	0	13	8	0.98
16833664--16833709	24	1.9	24	91	8	76	76	0	15	8	1.02
16840427--16840475	20	2.3	20	89	6	71	71	8	10	10	1.31
16843012--16843088	25	3.1	25	96	3	147	37	16	5	40	1.71
16848813--16848847	16	2.2	16	89	0	52	31	11	14	42	1.81
16857916--16857953	19	2.1	19	85	5	51	47	5	21	26	1.71
16862381--16862443	31	2.1	29	85	11	83	58	14	6	20	1.57
16864934--16864974	19	2.2	18	86	4	55	43	39	2	14	1.59
16865037--16865074	12	3.0	13	80	7	51	55	28	0	15	1.41
16865107--16865148	7	6.4	7	78	15	54	40	45	2	11	1.54
16865114--16865159	18	2.6	18	86	6	58	39	47	2	10	1.51
16868136--16868163	14	2.0	14	100	0	56	28	42	14	14	1.84
16868850--16868934	12	7.5	11	73	15	59	48	36	1	14	1.51
16868851--16868934	24	3.7	23	73	16	70	48	35	1	14	1.51
16868895--16868934	19	2.1	19	90	0	62	52	35	0	12	1.39
16868898--16868953	19	2.9	19	83	2	58	50	32	1	16	1.55
16870981--16871057	23	3.4	23	74	13	63	58	7	5	28	1.48
16871006--16871044	21	1.9	21	94	5	71	56	10	7	25	1.59
16872032--16872069	17	2.2	17	90	0	58	39	10	5	44	1.61
16875688--16875731	10	4.4	10	91	0	70	0	29	0	70	0.88
16875688--16875727	15	2.7	15	88	0	62	0	30	0	70	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16875688--16875731	5	8.8	5	89	0	52	0	29	0	70	0.88
16877261--16877317	25	2.3	25	78	6	62	50	14	5	29	1.64
16877334--16877413	14	6.0	13	71	10	54	51	27	5	16	1.65
16877643--16877680	15	2.5	15	84	16	51	76	2	0	21	0.91
16877651--16877685	16	2.2	16	90	10	54	77	0	0	22	0.78
16877645--16877685	9	4.8	9	85	14	52	75	2	0	21	0.92
16878355--16878464	42	2.6	42	79	2	114	32	21	10	35	1.87
16878560--16878786	85	2.7	83	81	9	230	28	18	12	41	1.86
16879259--16879369	31	3.6	30	84	3	116	32	21	10	35	1.88
16883472--16883642	55	3.1	54	78	5	173	20	23	18	38	1.94
16883809--16883960	3	53.3	3	68	20	60	34	1	3	61	1.21
16883835--16883930	5	19.2	5	79	16	92	37	1	4	57	1.25
16883815--16883944	33	3.9	33	71	18	99	37	1	3	56	1.27
16884397--16884446	19	2.6	19	80	0	55	36	4	14	46	1.63
16884781--16884859	6	13.2	6	69	24	51	17	2	3	75	1.06
16884773--16884892	18	7.0	17	72	13	95	19	4	2	74	1.10
16884783--16884890	35	3.0	35	75	14	103	19	3	2	74	1.10
16885698--16885886	60	3.1	61	80	6	211	19	18	13	48	1.81
16885934--16885994	32	1.9	32	89	0	95	27	14	21	36	1.93
16892208--16892359	75	2.0	75	100	0	304	32	13	19	35	1.90
16893834--16894143	145	2.1	149	86	4	443	36	10	10	42	1.74
16894066--16894162	45	2.2	44	80	10	117	37	8	12	42	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16894284--16894327	10	4.8	10	81	18	60	79	0	0	20	0.73
16894261--16894330	17	4.1	16	80	8	77	72	1	2	22	1.05
16895016--16895069	20	2.5	22	76	17	58	37	9	12	40	1.76
16895135--16895206	3	25.0	3	73	18	64	63	2	1	31	1.17
16895133--16895205	13	5.2	13	76	9	56	65	2	1	30	1.15
16895135--16895285	19	7.9	19	69	21	68	56	7	0	35	1.32
16895136--16895254	5	22.2	5	70	14	51	57	6	0	34	1.31
16895249--16895293	21	2.1	22	91	4	74	51	13	0	35	1.41
16907679--16907742	25	2.5	26	80	10	69	65	3	4	26	1.27
16907726--16907770	15	3.2	13	82	14	54	77	4	0	17	0.92
16907731--16907771	19	2.1	20	95	4	75	75	4	0	19	0.98
16907731--16907770	15	2.8	14	88	11	55	77	5	0	17	0.94
16908562--16908695	3	44.3	3	71	22	79	61	5	0	32	1.26
16908623--16908718	5	18.2	5	79	14	70	57	8	0	34	1.29
16908562--16908720	21	7.8	21	71	17	63	59	7	0	32	1.30
16908566--16908718	26	5.8	26	71	25	85	59	7	0	32	1.29
16909941--16910008	21	3.2	20	77	8	73	27	11	8	51	1.68
16918734--16918770	14	2.6	14	95	0	65	32	13	27	27	1.94
16921899--16922004	55	1.9	57	81	14	132	55	1	7	34	1.39
16921982--16922016	16	2.2	16	90	10	54	71	0	0	28	0.86
16922003--16922055	23	2.3	25	75	18	60	64	3	0	32	1.12
16922088--16922134	25	1.9	24	86	4	67	55	0	2	42	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16922081--16922153	25	3.0	23	78	7	65	53	1	2	42	1.23
16926085--16926141	6	9.5	6	98	0	105	14	33	0	52	1.41
16937190--16937263	36	2.1	36	82	5	87	48	2	1	47	1.24
16949334--16949366	15	2.4	14	85	14	50	87	0	9	3	0.63
16950613--16950663	20	2.6	19	87	3	75	47	0	0	52	1.00
16953759--16953802	16	2.7	16	85	3	61	11	13	2	72	1.21
16954156--16954183	14	2.0	14	100	0	56	35	7	7	50	1.57
16957384--16960009	901	2.9	890	86	3	3511	40	14	17	27	1.88
16966637--16966691	24	2.3	25	81	9	69	50	7	20	21	1.71
16970569--16970745	50	3.6	49	78	8	162	30	13	10	45	1.78
16970666--16970921	48	5.3	48	73	8	139	30	12	13	43	1.81
16979283--16979347	34	1.9	34	87	0	94	24	13	9	52	1.70
16980988--16981012	3	8.3	3	100	0	50	68	0	32	0	0.90
16981509--16981534	9	2.9	9	100	0	52	7	23	0	69	1.14
16981518--16981622	42	2.5	41	90	4	165	12	19	9	59	1.60
16984711--16984761	19	2.7	19	81	0	57	41	31	1	25	1.67
16984770--16984808	7	5.6	7	84	9	53	46	43	0	10	1.37
16984776--16984810	13	2.7	13	95	0	61	42	48	0	8	1.33
16986777--16986811	13	2.6	14	86	9	54	85	0	11	2	0.69
16986837--16986883	20	2.4	20	82	3	60	72	0	14	12	1.13
16986818--16986881	19	3.3	20	76	10	62	75	1	15	7	1.11
16988287--16988372	43	2.0	43	83	0	109	32	9	22	36	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16995307--16995373	12	5.8	12	79	12	61	16	1	7	74	1.11
16995321--16995360	20	2.0	21	90	5	64	17	0	7	75	1.03
16996000--16996043	17	2.7	17	80	19	58	72	2	4	20	1.13
16998255--16998326	20	3.7	20	84	1	92	40	38	0	20	1.53
16998354--16998418	7	10.0	7	77	12	59	41	36	0	21	1.53
16998365--16998416	19	2.8	18	88	2	68	40	36	0	23	1.55
16998358--16998428	25	2.8	24	85	6	88	40	35	1	22	1.63
16998957--16999020	27	2.3	27	76	10	67	37	15	17	29	1.91
17004619--17004769	74	2.0	75	93	1	259	34	0	6	58	1.29
17004715--17004763	22	2.2	23	85	10	66	36	0	6	57	1.24
17005058--17005117	30	2.0	30	93	6	104	58	5	3	33	1.36
17026704--17026728	13	1.9	13	100	0	50	52	0	16	32	1.44
17041705--17041797	19	4.8	19	75	12	91	49	0	10	39	1.38
17041729--17041798	20	3.5	20	82	5	88	50	0	10	40	1.36
17042034--17042065	16	2.1	15	94	5	55	15	0	12	71	1.14
17042060--17042094	15	2.3	15	85	0	52	31	0	0	68	0.90
17042102--17042154	19	2.7	20	82	5	63	28	5	11	54	1.58
17044584--17044631	20	2.4	20	96	0	87	43	12	16	27	1.84
17069990--17070112	36	3.4	36	88	1	174	43	19	6	30	1.76
17078465--17078509	22	2.0	23	82	4	56	42	13	13	31	1.82
17089580--17089631	18	3.0	18	83	10	56	15	7	3	73	1.21
17091028--17092630	800	2.0	800	94	0	2785	34	15	16	33	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17095665--17095811	22	6.6	22	74	9	91	29	6	19	44	1.75
17095687--17095892	44	4.6	44	79	6	146	33	8	16	41	1.79
17095754--17095813	24	2.6	23	84	7	77	31	6	21	40	1.79
17095759--17095883	44	2.8	45	83	3	153	37	10	14	37	1.80
17096153--17096197	19	2.4	19	89	10	67	33	8	11	46	1.70
17096278--17096320	17	2.6	17	92	3	70	39	18	6	34	1.78
17096346--17096400	27	2.0	27	83	13	69	29	10	10	49	1.72
17096618--17096796	67	2.7	65	80	6	171	25	23	8	43	1.81
17096700--17096827	66	1.9	67	85	4	179	21	19	12	46	1.83
17098363--17098452	46	2.0	44	82	8	110	40	11	7	41	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129