genome.fa.s13.2.7.7.80.10.50.1000.85.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  85  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15134782--15134816	18	1.9	18	88	0	52	54	0	0	45	0.99
15134923--15134977	22	2.6	21	76	18	60	43	0	1	54	1.10
15134964--15135059	35	2.7	34	78	15	88	47	2	2	47	1.25
15135493--15135664	12	14.6	12	65	24	66	48	3	1	46	1.26
15135519--15135585	26	2.6	25	77	11	73	49	5	1	43	1.36
15135586--15135627	22	1.9	22	85	9	59	42	0	0	57	0.99
15135596--15135681	22	3.4	25	72	25	67	47	2	1	48	1.22
15136875--15136934	21	2.9	21	78	11	61	56	6	0	36	1.26
15137138--15137178	20	2.1	19	86	4	55	48	4	0	46	1.23
15137172--15137232	21	3.4	17	73	18	52	45	1	3	49	1.28
15137400--15137433	17	2.0	17	88	0	50	38	2	2	55	1.30
15137447--15137527	20	3.9	21	77	11	69	46	0	1	51	1.08
15137459--15137539	25	3.2	26	80	16	89	48	0	2	49	1.14
15137682--15138239	180	3.1	179	78	5	581	43	10	6	39	1.64
15138878--15138912	13	2.8	13	87	12	56	45	0	5	48	1.26
15138863--15138909	20	2.3	21	79	17	55	44	4	4	46	1.42
15139051--15139157	43	2.4	43	80	12	101	48	2	0	47	1.22
15139139--15139175	18	2.0	18	89	5	56	48	0	2	48	1.15
15139398--15139457	27	2.2	27	96	0	111	40	18	13	28	1.88
15139678--15139749	21	3.5	19	75	11	63	27	20	26	25	1.99
15147892--15147944	26	2.0	26	85	7	72	30	9	20	39	1.84
15149333--15149384	14	3.6	16	73	19	51	42	0	1	55	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15149643--15149671	8	3.6	8	100	0	58	34	0	0	65	0.93
15150031--15150093	26	2.5	25	82	7	65	38	3	3	55	1.32
15150315--15150344	14	2.1	14	100	0	60	43	0	0	56	0.99
15150635--15150666	10	3.1	11	82	17	50	46	0	0	53	1.00
15150726--15150791	25	2.4	26	78	14	71	43	0	1	54	1.09
15150758--15150794	12	3.2	12	88	7	58	45	0	0	54	1.00
15150758--15150884	23	5.5	23	70	21	72	50	1	1	46	1.20
15150803--15150884	19	4.6	18	70	19	64	53	0	1	45	1.08
15150760--15150908	11	12.8	11	71	24	85	51	1	2	44	1.21
15150831--15150903	14	5.1	14	71	19	53	56	0	2	41	1.14
15151204--15151250	14	3.4	14	72	21	53	51	0	2	46	1.13
15151324--15151374	27	1.9	26	88	4	75	47	5	1	45	1.38
15151474--15151498	13	1.9	13	100	0	50	44	0	8	48	1.32
15151466--15151505	12	3.2	12	86	6	53	40	0	7	52	1.30
15151536--15151602	16	4.1	17	71	19	61	47	1	0	50	1.10
15151789--15151841	23	2.3	23	83	9	63	52	1	1	43	1.23
15151857--15151951	18	5.2	19	75	14	85	48	0	1	50	1.07
15153015--15153046	16	1.9	17	93	6	57	40	0	0	59	0.97
15153009--15153070	23	2.6	24	82	5	72	45	0	1	53	1.10
15153091--15153134	16	2.7	16	89	3	61	36	2	11	50	1.51
15153558--15153608	6	8.7	6	82	18	63	52	0	0	47	1.00
15154586--15154621	17	2.1	17	89	0	54	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15155588--15155747	72	2.2	72	88	2	232	27	18	20	34	1.95
15160385--15160558	72	2.4	72	84	1	224	27	18	18	35	1.94
15161454--15161490	13	2.6	14	91	8	58	37	0	5	56	1.22
15161471--15161565	27	3.5	27	72	22	81	50	0	3	46	1.17
15161639--15161701	34	1.9	32	87	6	90	57	1	0	41	1.08
15161761--15161813	17	2.8	20	75	16	58	49	0	3	47	1.19
15161913--15161967	21	2.8	19	77	20	60	45	1	5	47	1.36
15162001--15162074	31	2.3	34	81	11	93	48	2	1	47	1.24
15162029--15162073	17	2.7	18	83	10	60	44	4	0	51	1.21
15162103--15162160	10	6.0	10	76	15	68	51	0	0	48	1.00
15162100--15162164	19	3.6	18	79	20	73	52	0	0	47	1.00
15162322--15162358	18	2.2	18	85	9	51	43	2	0	54	1.14
15162573--15162616	23	1.9	23	85	0	61	40	0	4	54	1.21
15162609--15162639	15	2.0	16	93	6	55	38	0	0	61	0.96
15162604--15162656	8	6.4	8	80	10	54	41	0	0	58	0.98
15162842--15162898	24	2.4	22	82	11	60	47	1	3	47	1.29
15162951--15163006	19	2.8	20	78	13	62	57	3	0	39	1.16
15162950--15163024	33	2.2	34	80	17	86	54	2	0	42	1.14
15163070--15163163	41	2.3	41	85	1	118	46	19	12	21	1.82
15163503--15163556	9	6.1	9	74	18	51	42	1	0	55	1.10
15163746--15163779	13	2.6	13	85	0	50	67	0	5	26	1.13
15164749--15169069	181	24.0	179	76	7	2921	41	9	8	40	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15165227--15165541	166	1.9	167	84	6	433	43	7	6	42	1.57
15166280--15166330	18	2.9	18	75	24	63	39	13	3	43	1.63
15164812--15169071	544	7.9	535	76	6	3060	41	9	8	40	1.68
15164747--15169054	363	12.0	361	75	6	3030	41	9	8	40	1.68
15169106--15170781	362	4.6	357	74	8	1078	40	9	8	41	1.67
15170347--15170393	17	2.7	18	77	12	53	38	4	8	48	1.53
15169070--15170758	181	9.4	181	73	8	944	40	9	8	41	1.68
15170906--15171234	182	1.8	182	79	6	389	41	11	8	38	1.72
15171281--15173589	181	12.8	181	73	10	1350	42	9	8	40	1.67
15175271--15175621	181	1.9	181	82	3	429	38	9	8	43	1.67
15179155--15179603	225	2.0	226	95	1	819	28	8	16	46	1.76
15183745--15184265	145	3.6	145	84	3	618	31	14	13	40	1.84
15185845--15185879	18	1.9	18	94	0	61	17	11	28	42	1.83
15188163--15188192	3	10.0	3	100	0	60	33	33	0	33	1.58
15188191--15188289	3	33.0	3	91	0	135	67	6	0	26	1.13
15188936--15188968	2	16.5	2	100	0	66	0	48	0	51	1.00
15190452--15190484	16	2.1	17	88	11	52	63	0	21	15	1.30
15202167--15202303	63	2.2	63	80	11	147	35	8	11	44	1.70
15202399--15202542	63	2.3	61	81	9	166	45	11	8	34	1.71
15205828--15206255	148	2.9	145	79	6	450	51	7	17	22	1.70
15207519--15207548	15	2.0	15	93	0	51	26	20	10	43	1.83
15207646--15207704	26	2.3	26	84	0	73	37	20	10	32	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15207929--15207977	18	2.6	19	81	12	66	77	0	18	4	0.92
15208088--15208191	6	15.8	6	74	21	52	79	4	5	9	1.03
15208088--15208192	7	14.7	7	80	13	63	80	4	5	9	1.03
15208101--15208293	14	14.0	14	79	4	133	75	7	8	8	1.20
15208188--15208293	7	15.1	7	89	0	104	72	9	10	7	1.28
15208088--15208302	21	10.5	21	74	5	136	75	6	8	8	1.19
15208306--15208366	11	5.3	11	70	18	52	80	4	13	1	0.95
15208533--15208665	32	4.2	32	82	0	131	37	28	14	19	1.91
15208533--15208665	64	2.1	64	81	0	149	37	28	14	19	1.91
15208710--15208768	22	2.6	22	78	5	64	33	10	13	42	1.78
15208983--15209016	15	2.3	15	95	5	61	85	2	0	11	0.71
15222440--15222478	19	2.1	19	85	9	53	35	20	12	30	1.90
15224834--15224885	20	2.6	20	93	0	86	59	3	15	21	1.52
15229325--15229365	21	2.0	21	85	0	55	31	7	4	56	1.48
15243994--15244330	58	5.7	58	78	7	338	36	13	7	43	1.72
15246780--15246814	10	3.5	10	92	7	54	8	8	0	82	0.83
15246802--15247112	106	2.9	106	91	3	520	31	15	14	38	1.87
15247129--15247435	41	7.4	41	82	3	330	36	20	16	26	1.94
15248419--15248538	62	1.9	63	89	1	188	31	22	7	38	1.82
15249213--15249259	21	2.3	20	85	3	58	6	12	2	78	1.02
15249218--15249284	8	7.6	8	77	15	62	10	14	1	73	1.17
15249217--15249284	17	3.8	17	76	16	66	10	14	1	73	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15254050--15254424	58	6.6	58	79	14	386	36	14	6	42	1.72
15254097--15254191	48	2.0	48	89	4	147	38	15	9	35	1.80
15254050--15254424	106	3.3	107	82	8	356	36	14	6	42	1.72
15266990--15267018	1	29.0	1	100	0	58	100	0	0	0	0.00
15272632--15272998	183	2.0	183	98	0	707	43	13	11	31	1.79
15274178--15274221	5	8.8	5	100	0	88	20	0	18	61	1.35
15275446--15275537	34	2.7	34	96	0	166	36	6	16	40	1.74
15277511--15277590	33	2.4	32	80	12	81	35	11	17	36	1.86
15278207--15278286	33	2.5	33	74	9	85	48	11	12	27	1.75
15279399--15279425	2	13.5	2	100	0	54	48	0	0	51	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129