genome.fa.s13.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  91  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16261449--16261500	3	17.7	3	96	4	97	69	0	0	30	0.89
16273644--16273711	35	1.9	35	87	0	100	26	17	17	38	1.92
16274033--16274085	23	2.4	22	80	3	61	52	0	11	35	1.37
16278141--16278182	18	2.3	19	83	4	50	30	4	9	54	1.53
16278140--16278182	19	2.3	19	84	8	52	30	4	9	55	1.52
16279686--16279734	10	4.7	10	82	7	62	83	0	14	2	0.73
16279903--16279946	14	3.2	14	81	12	56	77	4	15	2	1.04
16284336--16284383	16	2.8	17	84	9	62	83	2	12	2	0.83
16284336--16284395	19	3.6	17	77	16	63	81	1	13	3	0.89
16284337--16284395	15	3.6	16	74	14	57	81	1	13	3	0.90
16285247--16285397	65	2.3	65	85	2	196	36	17	17	27	1.93
16285247--16285749	34	15.0	34	66	14	222	36	19	15	28	1.92
16285398--16285584	67	2.7	72	79	9	231	35	21	14	28	1.93
16285446--16285644	67	3.0	67	88	2	258	38	20	12	28	1.89
16285623--16285834	66	3.2	67	82	6	252	35	18	15	30	1.92
16285456--16285772	166	1.9	165	87	4	460	37	18	13	29	1.90
16285450--16285775	33	9.8	33	69	11	193	37	19	13	29	1.90
16285523--16285736	99	2.1	100	84	5	272	38	19	13	28	1.89
16285623--16285834	65	3.2	67	82	6	243	35	18	15	30	1.92
16285884--16286041	41	4.0	40	75	14	130	37	18	9	34	1.84
16285905--16286168	41	6.9	38	71	18	133	35	18	10	34	1.86
16285950--16285981	15	2.1	15	94	0	55	21	25	12	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16286344--16286379	18	2.0	18	94	0	63	30	27	8	33	1.86
16286682--16286791	58	1.9	58	96	0	202	40	12	8	39	1.73
16286784--16286837	22	2.5	21	85	14	74	29	18	12	38	1.88
16287040--16287074	9	3.8	9	88	3	52	42	5	2	48	1.41
16287139--16287236	33	3.0	33	83	5	135	28	19	22	29	1.98
16287174--16287436	120	2.2	121	86	3	377	28	17	19	34	1.94
16287329--16287519	88	2.2	88	97	0	355	27	18	17	36	1.94
16287205--16287655	209	2.2	208	90	0	713	28	17	18	34	1.94
16287413--16287664	121	2.1	121	90	0	387	28	17	19	33	1.95
16287612--16287877	69	3.9	67	85	3	352	34	12	16	36	1.87
16293096--16293152	28	2.0	28	93	0	96	26	21	15	36	1.93
16298900--16298969	18	3.9	18	83	12	76	71	1	15	11	1.21
16298910--16298969	18	3.5	17	82	12	79	71	1	15	11	1.22
16298952--16298986	7	5.1	7	86	6	54	77	0	11	11	1.00
16300789--16300869	34	2.4	34	85	2	101	32	13	16	38	1.87
16300832--16300935	16	6.5	16	69	11	61	35	10	13	40	1.79
16300927--16301014	35	2.5	36	79	3	99	38	11	9	40	1.73
16301004--16301051	15	2.9	17	75	12	55	33	20	10	35	1.87
16305457--16305490	18	1.9	17	94	5	59	85	0	11	2	0.71
16320121--16320193	32	2.3	30	80	15	85	21	2	21	53	1.59
16320129--16320197	32	2.1	32	86	7	95	23	2	21	52	1.61
16320613--16320795	59	3.1	57	79	14	187	48	26	5	20	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16320663--16320743	19	4.2	19	70	9	65	48	27	2	22	1.63
16320754--16320794	19	2.2	19	86	8	57	51	26	7	14	1.69
16323203--16323228	7	3.7	7	100	0	52	76	0	11	11	1.01
16323781--16323842	26	2.2	28	83	8	74	61	4	6	27	1.41
16323844--16323874	15	2.0	16	93	6	55	77	0	0	22	0.77
16323825--16323887	22	2.7	22	76	11	56	76	0	3	20	0.93
16324737--16324906	3	59.3	3	66	17	76	60	3	4	31	1.35
16324818--16324889	5	14.2	5	75	18	69	61	2	0	36	1.11
16324814--16324906	21	4.5	22	77	18	101	62	3	1	33	1.18
16326110--16326149	14	2.8	14	92	3	62	5	10	2	82	0.91
16334550--16334644	26	3.8	25	77	16	101	72	2	1	24	1.02
16334552--16334647	22	4.3	23	82	11	103	72	2	1	23	1.01
16334551--16334613	4	15.8	4	72	18	51	73	1	1	23	1.01
16335493--16335728	3	81.3	3	70	12	91	56	2	4	36	1.35
16342717--16342797	33	2.4	33	75	6	83	23	16	8	51	1.71
16342776--16342867	34	2.7	34	77	14	100	23	23	9	42	1.84
16343081--16343346	33	8.1	33	75	1	176	24	18	13	43	1.85
16345768--16345823	20	2.8	20	81	2	60	50	30	5	14	1.65
16345756--16345979	59	3.8	58	76	10	204	46	30	5	16	1.70
16347810--16347858	18	2.8	17	81	6	62	63	0	8	28	1.23
16358552--16358604	23	2.3	23	75	12	54	60	3	11	24	1.47
16369009--16369042	14	2.5	13	90	9	50	79	5	8	5	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16373728--16373788	29	2.1	29	81	9	70	47	6	14	31	1.70
16373891--16373939	18	2.8	17	78	3	53	55	2	4	38	1.31
16377014--16377045	2	16.0	2	100	0	64	0	50	0	50	1.00
16377062--16377090	2	14.5	2	100	0	58	51	48	0	0	1.00
16377322--16377372	20	2.5	20	87	0	66	29	0	19	50	1.48
16377317--16377372	24	2.3	24	93	0	94	30	0	19	50	1.48
16378652--16378683	2	16.0	2	100	0	64	50	0	0	50	1.00
16380884--16380914	2	15.5	2	100	0	62	51	0	0	48	1.00
16383189--16384122	320	2.9	315	80	6	1009	41	15	10	32	1.80
16383189--16384122	160	5.8	160	82	3	902	41	15	10	32	1.80
16383192--16384207	481	2.1	481	79	4	1048	42	15	10	32	1.80
16385305--16385341	13	2.8	13	87	0	56	62	5	8	24	1.44
16390299--16390511	61	3.5	61	71	15	170	33	17	11	37	1.86
16390286--16390541	123	2.1	123	83	2	318	34	15	12	37	1.86
16390320--16390542	123	1.8	123	87	0	329	34	16	13	36	1.87
16390493--16390613	63	1.9	63	83	6	156	35	9	11	42	1.74
16390915--16391032	47	2.5	46	80	5	128	32	11	15	41	1.82
16390749--16391164	222	1.9	223	83	5	543	36	10	14	38	1.80
16391174--16391296	63	2.0	63	85	6	169	43	8	15	33	1.76
16391174--16391348	64	2.8	63	78	6	158	41	9	16	32	1.81
16391720--16391789	28	2.5	28	95	0	122	18	4	31	45	1.69
16391774--16391826	12	4.3	12	75	13	54	16	9	32	41	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16391783--16391830	25	1.9	25	91	0	78	18	8	29	43	1.79
16395096--16395543	63	7.1	62	76	11	367	33	14	14	38	1.86
16395086--16395643	63	8.9	61	74	9	347	32	15	13	38	1.86
16395080--16395690	125	4.9	124	77	9	497	32	14	14	37	1.87
16396000--16396167	64	2.7	63	77	4	189	33	17	13	36	1.88
16395979--16396169	64	3.0	62	76	7	172	32	16	13	37	1.87
16396541--16396602	29	2.2	28	82	2	70	38	6	6	48	1.55
16399202--16399252	25	2.1	23	89	7	75	15	1	15	66	1.34
16401093--16401127	11	3.2	11	87	0	52	71	0	28	0	0.86
16401352--16401376	13	1.9	13	100	0	50	40	8	12	40	1.72
16401543--16401596	25	2.1	26	93	3	92	35	0	5	59	1.21
16401720--16401791	37	2.0	35	86	10	101	48	4	1	45	1.30
16406775--16406814	18	2.2	18	86	8	55	40	0	0	60	0.97
16406796--16406839	24	1.9	22	86	9	61	45	2	0	52	1.13
16406824--16406879	17	3.3	19	74	23	61	55	0	0	44	0.99
16407223--16407254	3	10.7	3	93	0	55	31	0	3	65	1.08
16408077--16408327	9	29.6	8	66	19	68	23	5	4	66	1.30
16408069--16408119	26	1.9	27	88	4	77	21	3	0	74	0.98
16408077--16408169	30	3.0	31	75	9	82	20	4	3	72	1.16
16408228--16408266	9	4.4	9	93	6	71	20	0	10	69	1.17
16408210--16408266	26	2.1	27	87	6	80	24	1	8	64	1.31
16408210--16408250	19	2.2	19	86	0	55	24	2	7	65	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16408230--16408280	17	3.1	16	91	5	66	23	1	9	64	1.34
16411571--16411596	9	2.9	9	100	0	52	34	23	0	42	1.54
16413238--16413291	21	2.7	20	80	11	56	55	12	16	14	1.69
16415306--16415343	20	2.0	19	85	10	51	34	7	2	55	1.43
16418994--16419046	23	2.3	23	100	0	106	43	13	7	35	1.72
16426428--16426480	3	17.7	3	100	0	106	32	0	0	67	0.91
16443739--16444033	114	2.6	114	79	2	333	47	4	8	39	1.53
16443922--16443980	24	2.5	23	81	8	73	49	1	3	45	1.28
16443838--16444219	190	2.0	186	81	7	443	50	5	7	37	1.52
16443959--16444105	78	1.9	77	80	9	174	54	6	5	33	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129