genome.fa.s13.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  8  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
994694--994736	22	2.0	22	85	0	59	27	23	9	39	1.85
994919--995030	45	2.5	45	88	2	165	20	16	26	35	1.94
994785--995232	155	2.9	155	88	3	652	32	13	21	33	1.92
995074--995185	45	2.5	44	88	2	154	22	15	24	38	1.92
995356--995413	5	11.6	5	85	7	82	18	1	1	77	0.94
995356--995415	21	3.0	19	85	7	75	18	3	1	76	1.00
995356--995407	26	2.0	26	92	0	86	19	1	1	76	0.97
995492--995614	19	6.7	19	69	20	66	33	5	0	60	1.20
995458--995608	22	6.7	23	74	19	115	33	5	0	60	1.21
995453--995607	45	3.4	45	80	15	151	34	5	0	60	1.21
995895--999374	181	19.4	181	76	7	2367	41	9	8	39	1.69
995984--1002343	540	11.9	529	72	11	2655	41	9	8	40	1.68
995977--1010727	897	16.5	874	70	14	3891	41	9	8	39	1.68
999242--999517	145	1.9	144	82	4	349	43	12	6	37	1.69
999387--1002421	180	17.1	179	76	8	2082	41	9	7	40	1.66
1000262--1000592	168	2.0	167	91	3	540	43	9	6	41	1.62
999387--1002423	361	8.5	357	75	9	1888	41	9	7	40	1.66
999387--1002421	541	5.7	537	76	8	2181	41	9	7	40	1.66
995991--1010736	721	20.3	712	70	13	4314	41	9	8	39	1.68
1002138--1002177	18	2.2	18	86	4	53	60	0	5	35	1.19
1002478--1002869	182	2.2	182	85	1	518	42	11	6	39	1.66
1002547--1003194	321	2.0	324	80	5	731	43	11	6	37	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1002871--1003299	179	2.4	179	81	3	520	44	8	7	38	1.64
1003148--1003457	154	2.0	155	86	3	428	42	7	8	41	1.63
1003312--1005423	363	5.9	363	74	8	987	41	9	7	40	1.67
1003294--1007673	181	24.0	181	69	11	1569	41	10	8	39	1.69
1007737--1008180	177	2.5	178	81	4	466	43	10	7	38	1.68
1008395--1010750	181	13.1	178	75	8	1580	41	9	8	39	1.69
1008399--1010731	361	6.5	354	75	7	1473	41	9	8	39	1.69
1008374--1010731	718	3.3	715	76	6	2055	41	9	8	39	1.69
1018816--1019229	181	2.3	181	81	4	469	45	8	7	38	1.63
1019559--1019598	19	2.0	19	85	9	53	40	10	10	40	1.72
1019323--1020149	180	4.6	181	74	9	681	39	7	9	42	1.67
1019317--1020086	360	2.1	359	79	6	815	39	7	9	43	1.66
1019986--1020314	163	2.0	166	83	6	418	39	9	9	41	1.70
1021134--1023425	181	12.7	179	73	11	1080	39	8	9	42	1.67
1022009--1023395	177	7.7	175	72	12	679	39	8	9	42	1.67
1022718--1023076	192	1.9	191	80	1	423	37	7	10	44	1.68
1023602--1023665	23	2.8	24	88	11	82	39	14	0	46	1.44
1023602--1023647	23	2.0	23	100	0	92	39	17	0	43	1.49
1024160--1024319	89	1.8	88	80	5	191	31	6	6	54	1.53
1024246--1024290	21	2.1	22	91	4	74	22	8	4	64	1.40
1024415--1024762	181	1.9	181	83	4	443	42	6	8	42	1.61
1024606--1024905	155	1.9	154	80	8	351	37	7	11	43	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1026325--1026350	13	2.0	13	100	0	52	23	30	15	30	1.95
1026393--1026429	13	3.0	13	84	7	51	29	0	0	70	0.88
1032082--1032245	87	1.9	87	92	0	274	40	7	6	45	1.58
1032720--1035317	181	14.5	178	73	10	915	40	7	9	41	1.66
1033335--1034292	179	5.4	178	75	8	426	40	7	11	40	1.70
1032222--1037140	361	13.8	359	73	10	2116	40	7	10	41	1.68
1035163--1035449	161	1.8	157	81	7	355	40	5	9	44	1.60
1035324--1037140	181	10.1	180	75	6	1284	39	8	10	41	1.70
1036973--1037281	145	2.1	146	81	7	353	40	7	9	43	1.64
1037157--1038009	181	4.7	178	75	10	709	40	7	9	42	1.65
1038004--1038101	51	1.9	51	91	0	160	37	5	9	47	1.57
1038064--1041036	180	16.6	178	75	8	1962	40	8	9	41	1.67
1038120--1049312	539	21.0	532	70	13	3061	40	7	9	41	1.67
1038635--1041036	355	6.7	357	74	9	969	40	8	9	41	1.68
1041062--1041332	140	1.9	141	82	5	334	40	8	8	43	1.64
1041171--1044454	181	18.3	180	75	8	2100	40	7	9	42	1.65
1041171--1044454	545	6.1	540	76	9	2336	40	7	9	42	1.65
1041225--1044454	726	4.5	723	75	8	2038	40	7	9	42	1.65
1043012--1043067	23	2.4	25	77	19	68	44	3	0	51	1.18
1044618--1045781	181	6.5	177	75	7	825	41	8	8	41	1.66
1044678--1045657	361	2.7	359	80	5	989	41	8	9	41	1.66
1044664--1045770	361	3.1	358	78	6	907	41	7	8	41	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1045823--1047452	181	9.1	180	76	6	1234	39	8	10	41	1.70
1045967--1047453	180	8.2	177	74	9	648	39	8	10	41	1.70
1047330--1047594	144	1.8	144	87	5	401	41	5	10	41	1.63
1047476--1049426	181	10.9	181	77	5	1584	40	7	10	41	1.68
1047487--1049426	720	2.7	709	79	6	1833	40	7	10	41	1.68
1049033--1049881	450	1.9	452	82	2	1091	41	8	9	39	1.68
1049431--1050098	181	3.7	180	80	5	714	42	9	9	39	1.70
1050069--1050127	29	2.0	29	96	0	109	40	3	3	52	1.35
1049891--1050298	210	1.9	210	83	4	529	39	7	8	43	1.64
1050101--1050577	180	2.7	181	78	8	526	39	7	8	44	1.64
1050858--1051019	86	1.9	87	83	8	215	43	8	8	39	1.65
1051154--1051926	158	4.6	163	75	12	528	41	9	8	40	1.68
1051403--1054942	180	19.6	176	71	11	1329	41	9	8	40	1.68
1051417--1052503	178	6.1	181	76	9	601	42	10	8	39	1.69
1051413--1054942	181	19.6	180	74	9	2069	41	9	8	40	1.68
1052499--1052574	36	2.1	36	95	0	134	50	6	3	39	1.47
1052535--1056337	180	21.1	179	72	12	2210	41	9	8	40	1.69
1052609--1069938	542	32.4	526	71	12	4402	41	9	8	40	1.68
1054959--1055014	18	3.2	18	75	14	64	39	5	7	48	1.54
1054745--1055165	216	2.0	216	80	5	476	42	10	7	39	1.68
1055061--1055384	169	1.9	169	85	3	447	42	7	8	41	1.64
1054199--1055681	742	2.0	744	86	4	2074	41	9	8	40	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1055230--1056337	367	3.1	355	77	8	876	42	10	8	39	1.69
1055222--1056338	544	2.1	530	82	7	1320	41	10	8	39	1.69
1056446--1066492	361	28.1	358	74	9	5957	41	9	8	40	1.68
1056447--1066519	181	56.4	178	74	8	5540	41	9	8	40	1.68
1057933--1058270	174	1.9	174	84	4	448	43	10	8	37	1.70
1058535--1058877	173	2.0	173	81	4	406	42	10	6	40	1.64
1059718--1059757	18	2.2	18	100	0	80	37	10	15	37	1.80
1059203--1066519	358	20.4	360	74	9	4426	41	9	8	40	1.68
1061207--1061665	176	2.6	176	91	1	720	42	8	8	40	1.67
1062231--1062263	18	1.9	17	88	11	50	39	6	6	48	1.53
1063115--1063168	17	3.1	18	78	13	58	38	11	1	48	1.50
1066530--1070027	181	19.5	179	77	7	2567	40	10	8	40	1.69
1067141--1067179	18	2.2	18	86	9	53	58	2	5	33	1.33
1066530--1070027	361	9.8	355	76	9	2419	40	10	8	40	1.69
1072417--1072451	16	2.2	16	89	0	52	40	11	14	34	1.82
1076872--1079313	181	13.6	179	76	6	1509	42	9	8	39	1.67
1079275--1079338	24	2.6	24	87	2	83	57	1	10	29	1.42
1079292--1079342	25	2.1	24	96	3	93	52	0	17	29	1.45
1079316--1081119	181	10.2	178	74	11	1325	42	10	7	38	1.68
1076871--1081118	360	11.8	347	72	12	1750	42	10	7	39	1.68
1079380--1081086	182	9.7	173	74	12	944	42	10	7	39	1.68
1076836--1081126	525	8.0	524	75	11	2375	42	10	7	39	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1081335--1081373	18	2.1	19	85	4	53	53	2	2	41	1.28
1081123--1084325	180	18.2	179	74	10	1929	42	9	7	40	1.66
1081123--1084264	536	5.9	531	74	11	1679	42	9	7	40	1.66
1082892--1084325	357	4.1	341	76	12	993	43	9	7	39	1.65
1084329--1085620	182	7.2	177	74	9	886	39	8	10	41	1.70
1086382--1086422	21	2.0	21	95	0	73	36	36	2	24	1.69
1088492--1088596	52	2.0	52	84	0	138	26	23	5	43	1.76
1088830--1092402	181	20.1	179	75	9	2109	40	7	9	41	1.67
1088830--1095395	363	18.1	359	70	12	2717	40	8	10	41	1.69
1089846--1090166	164	2.0	164	82	1	394	39	7	11	41	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129