genome.fa.s13.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  124  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22578037--22578092	25	2.3	24	84	3	76	48	1	3	46	1.30
22579200--22579269	35	2.0	34	81	8	79	38	5	5	50	1.50
22582655--22582922	147	1.8	147	82	3	351	36	6	8	47	1.61
22582749--22582904	84	1.9	83	84	6	208	36	9	9	44	1.70
22584706--22584791	37	2.5	34	80	12	102	48	11	2	37	1.52
22584907--22584980	33	2.2	33	92	0	121	31	24	6	37	1.81
22587169--22587222	16	3.4	16	80	9	58	9	5	3	81	0.97
22587436--22587488	16	3.5	15	76	7	63	33	3	9	52	1.52
22587437--22587492	30	1.9	28	82	13	69	35	3	8	51	1.51
22587492--22587548	15	3.9	16	72	23	54	22	3	7	66	1.31
22587608--22587661	21	2.7	20	76	15	58	27	5	14	51	1.64
22588140--22588169	3	10.0	3	100	0	60	33	0	0	66	0.92
22588169--22588196	3	9.3	3	100	0	56	0	0	32	67	0.91
22588979--22589197	66	3.4	66	82	4	266	31	25	16	26	1.96
22595965--22595990	13	2.0	13	100	0	52	38	0	7	53	1.30
22600385--22600432	15	3.0	16	75	9	53	68	2	2	27	1.11
22600371--22600432	32	2.0	31	83	3	79	64	1	1	32	1.13
22603869--22603894	2	13.0	2	100	0	52	0	50	0	50	1.00
22604877--22604941	33	2.0	33	93	0	112	32	16	16	33	1.92
22614605--22614637	15	2.1	16	88	5	50	57	3	0	39	1.14
22617949--22617977	13	2.2	13	100	0	58	41	6	17	34	1.76
22620220--22620870	93	6.9	94	76	10	485	39	18	11	30	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22620383--22620634	138	1.8	139	82	6	332	38	19	11	29	1.88
22620242--22620871	48	13.3	49	73	14	339	39	18	11	30	1.86
22635129--22635193	34	1.9	34	87	0	94	41	4	13	40	1.66
22635696--22635729	2	17.0	2	100	0	68	50	0	0	50	1.00
22636771--22636797	2	13.5	2	100	0	54	48	0	0	51	1.00
22640048--22640106	27	2.1	28	84	3	75	54	1	0	44	1.10
22640518--22640562	21	2.1	22	87	4	65	48	0	2	48	1.13
22645514--22645556	20	2.1	21	86	4	61	44	0	2	53	1.13
22645562--22645600	20	1.9	21	84	5	53	61	2	5	30	1.31
22648731--22648770	18	2.3	18	86	4	55	62	2	2	32	1.22
22649688--22649749	24	2.5	26	79	12	67	50	1	0	48	1.10
22649713--22649765	26	2.0	26	81	0	61	50	1	3	43	1.30
22651818--22651854	2	18.5	2	100	0	74	51	0	0	48	1.00
22653199--22653286	40	2.1	42	87	4	126	29	2	6	61	1.34
22658764--22658797	16	2.1	17	89	10	54	55	5	5	32	1.48
22659915--22659976	24	2.6	23	77	7	61	37	6	0	56	1.25
22659935--22659968	17	2.0	17	94	0	59	32	0	0	67	0.91
22660629--22660669	4	10.2	4	100	0	82	24	0	24	51	1.49
22661548--22661573	2	13.0	2	100	0	52	50	0	0	50	1.00
22662955--22663366	211	2.0	206	80	6	454	45	12	3	38	1.58
22663627--22663665	2	19.5	2	100	0	78	48	0	0	51	1.00
22664815--22664933	33	3.6	34	75	11	93	33	10	13	42	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22664830--22664932	33	3.1	34	78	9	104	33	10	12	42	1.77
22668280--22668304	12	2.1	12	100	0	50	40	0	0	60	0.97
22673772--22673828	23	2.3	24	79	14	62	38	0	0	61	0.96
22679978--22680096	27	4.2	28	83	10	127	56	0	4	39	1.19
22681569--22681648	28	2.8	28	84	9	99	55	0	5	40	1.22
22682799--22682833	2	17.5	2	93	0	61	48	0	0	51	1.00
22692038--22692076	20	2.0	20	85	9	55	28	0	0	71	0.86
22693716--22693776	24	2.6	23	84	5	68	60	0	4	34	1.18
22693714--22693784	29	2.4	28	77	9	70	59	0	4	36	1.17
22695438--22695496	25	2.4	25	86	5	77	57	1	0	40	1.09
22696306--22696592	152	1.9	152	91	0	466	31	13	16	39	1.86
22702892--22702932	20	2.0	21	85	4	57	48	0	2	48	1.14
22703668--22703712	19	2.3	20	88	7	74	51	0	0	48	1.00
22710939--22710968	3	10.0	3	100	0	60	0	33	0	66	0.92
22711546--22711623	40	2.0	39	82	7	95	43	1	2	52	1.23
22711946--22711979	14	2.6	13	90	9	52	41	14	5	38	1.70
22712560--22712617	24	2.4	24	78	15	66	60	0	0	39	0.97
22712566--22712616	26	2.0	24	82	14	59	58	0	0	41	0.98
22712582--22712620	20	1.9	21	85	15	55	61	0	0	38	0.96
22719108--22719141	17	2.0	17	94	0	59	52	14	11	20	1.73
22723320--22723364	18	2.6	18	82	6	58	51	0	2	46	1.13
22723358--22723391	16	2.0	17	88	11	52	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22726730--22726780	3	17.7	3	84	8	70	68	1	0	29	1.00
22726706--22726780	22	3.5	22	78	14	75	62	5	0	32	1.17
22727236--22727275	19	2.1	19	85	4	53	50	12	15	22	1.77
22727641--22727744	42	2.5	40	84	6	127	63	2	5	27	1.32
22727618--22727744	20	6.1	20	76	9	85	66	3	4	25	1.26
22727696--22727871	8	23.5	8	73	17	80	64	1	2	31	1.16
22727684--22727838	59	2.9	50	75	17	134	63	1	2	32	1.19
22727723--22727871	27	5.2	28	72	15	110	63	2	2	32	1.17
22727699--22727859	33	4.7	34	71	19	104	63	1	2	32	1.15
22727883--22727916	14	2.4	14	86	13	52	82	0	0	17	0.67
22728108--22728522	42	9.8	42	81	8	385	39	17	14	27	1.90
22728108--22728522	84	4.9	84	86	4	505	39	17	14	27	1.90
22728092--22728514	126	3.3	126	81	6	476	40	17	14	27	1.89
22729507--22729565	29	2.0	29	90	6	93	8	11	1	77	1.05
22729517--22729586	9	7.2	10	78	14	67	10	8	1	80	0.98
22729519--22729586	29	2.3	29	87	5	93	10	8	1	79	1.00
22729517--22729576	11	6.0	11	71	28	62	8	10	1	80	0.99
22733373--22733528	57	2.7	59	76	12	171	37	10	5	46	1.61
22733373--22733529	58	2.7	60	76	11	175	37	10	5	46	1.61
22733552--22733611	6	10.5	6	80	8	54	76	0	8	15	1.00
22733547--22733611	17	3.9	17	77	15	64	76	0	7	15	0.99
22733640--22733701	3	20.7	3	83	6	81	69	1	0	29	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22734500--22734645	42	3.5	40	77	10	136	65	2	3	29	1.20
22734550--22734694	14	10.6	15	73	18	81	64	1	2	31	1.16
22734543--22734686	17	8.9	15	73	18	96	64	0	2	31	1.13
22734550--22734728	4	44.5	4	68	22	60	67	1	3	27	1.16
22734591--22734682	31	2.8	32	80	11	100	65	1	2	31	1.12
22736499--22736528	14	2.1	15	93	6	53	40	0	0	60	0.97
22749743--22749780	18	2.1	19	85	14	53	34	13	10	42	1.78
22759152--22759267	58	2.0	58	94	0	205	25	22	13	38	1.91
22761311--22761514	102	2.0	103	95	0	365	48	26	11	13	1.76
22762107--22762152	21	2.1	22	84	4	58	54	0	0	45	0.99
22762104--22762154	22	2.3	22	80	6	59	54	0	0	45	0.99
22762179--22762214	18	2.0	18	88	0	54	61	0	0	38	0.96
22762893--22762952	23	2.6	24	73	19	65	38	3	3	55	1.33
22763219--22763275	22	2.5	24	80	11	66	47	0	0	52	1.00
22777261--22777303	15	2.7	16	85	10	61	46	0	2	51	1.13
22777342--22777442	26	3.8	26	79	13	100	34	0	0	64	1.00
22777347--22777407	13	4.8	13	75	13	65	32	0	0	67	0.91
22777358--22777490	6	21.7	6	70	21	64	38	0	0	60	1.02
22777360--22777423	13	5.1	12	71	23	51	32	0	0	67	0.91
22777456--22777496	18	2.3	18	82	0	55	41	0	2	56	1.13
22777495--22777535	9	4.6	9	100	0	82	56	0	0	43	0.99
22779039--22779083	20	2.2	21	84	4	56	55	8	0	35	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22780843--22780880	17	2.3	17	90	4	60	60	0	0	39	0.97
22783989--22784069	20	4.0	20	67	12	58	55	0	0	44	0.99
22784005--22784080	25	3.0	25	74	14	68	57	0	0	42	0.98
22787231--22787294	23	2.5	25	80	14	69	67	1	0	31	1.00
22787985--22788028	23	1.9	23	85	0	61	34	0	4	61	1.16
22787993--22788021	14	2.0	15	93	6	51	34	0	0	65	0.93
22792401--22792472	35	2.1	35	94	0	126	47	19	8	25	1.77
22800874--22800904	6	5.3	6	92	7	55	45	0	0	54	0.99
22800874--22800906	17	1.9	17	93	0	57	48	0	0	51	1.00
22801018--22801086	35	2.0	35	83	11	88	53	0	0	46	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129