genome.fa.s13.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  100  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18143234--18143288	24	2.3	23	87	6	74	32	3	18	45	1.67
18144766--18144870	19	5.5	19	85	4	106	43	42	0	12	1.48
18144764--18144870	38	2.8	38	83	9	137	42	42	0	13	1.49
18144765--18144870	57	1.9	55	82	7	133	43	43	0	12	1.48
18145853--18145879	8	3.4	8	100	0	54	88	0	11	0	0.50
18145902--18145973	20	3.5	20	74	10	67	25	5	15	54	1.62
18145963--18146004	17	2.5	17	100	0	84	33	7	14	45	1.72
18146040--18146094	24	2.3	23	81	6	56	34	1	14	49	1.54
18146053--18146092	19	2.1	19	86	9	55	32	0	15	52	1.43
18151285--18151323	1	39.0	1	100	0	78	100	0	0	0	0.00
18155627--18155668	19	2.1	21	86	8	61	21	2	7	69	1.25
18155649--18155683	14	2.6	14	86	4	54	20	0	5	74	1.02
18155839--18155886	24	2.0	24	88	8	71	18	0	4	77	0.93
18157393--18157427	3	11.7	3	100	0	70	31	0	0	68	0.90
18157744--18157852	40	2.7	39	84	9	157	36	12	15	34	1.86
18157911--18158082	34	4.9	34	77	8	157	37	20	12	29	1.90
18157928--18158122	74	2.6	74	85	3	268	39	18	12	29	1.88
18157928--18158127	40	5.3	39	74	15	170	40	18	12	29	1.87
18167813--18167838	8	3.2	8	100	0	52	38	11	23	26	1.89
18171252--18171293	20	2.0	21	86	4	59	23	0	7	69	1.13
18171657--18171699	17	2.5	17	85	11	61	18	11	0	69	1.17
18171959--18172041	11	7.1	11	69	14	51	73	10	0	15	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18171990--18172028	15	2.5	16	88	12	55	66	17	0	15	1.25
18172935--18172981	6	6.9	7	84	15	55	25	2	0	72	0.96
18179334--18179515	73	2.5	72	83	6	188	33	9	19	37	1.84
18179359--18179515	74	2.1	74	86	5	212	33	8	19	38	1.81
18179381--18179551	73	2.3	73	80	6	177	38	9	18	33	1.83
18183583--18183651	34	2.0	34	91	0	111	47	11	18	21	1.80
18191151--18191175	12	2.1	12	100	0	50	32	0	8	60	1.26
18205266--18205300	14	2.5	14	100	0	70	5	14	14	65	1.44
18214993--18215379	144	2.7	142	78	7	370	40	13	14	31	1.85
18215867--18215930	7	9.0	7	80	10	67	3	4	10	81	0.96
18216014--18216214	78	2.6	78	88	3	289	40	15	14	28	1.88
18216280--18216445	79	2.1	81	80	9	189	45	15	10	28	1.80
18216611--18216736	44	2.8	44	80	5	146	42	17	7	32	1.78
18218213--18218266	26	2.2	25	86	6	74	31	7	12	48	1.69
18219099--18219145	20	2.5	20	80	16	55	4	14	4	76	1.09
18219080--18219135	22	2.6	21	81	10	60	3	12	3	80	0.97
18219629--18219682	14	3.7	14	79	16	56	3	18	0	77	0.91
18219631--18219671	19	2.3	19	87	8	59	2	19	0	78	0.87
18219656--18219682	11	2.5	11	100	0	54	7	11	0	81	0.87
18219619--18219682	26	2.5	25	82	10	67	4	18	0	76	0.95
18223530--18223717	38	5.0	38	79	3	173	34	10	21	34	1.87
18223526--18223726	76	2.7	76	83	3	248	34	9	21	33	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18225337--18225394	26	2.2	27	84	9	75	29	12	5	53	1.59
18225832--18225871	21	2.0	21	85	5	55	15	0	25	60	1.35
18225849--18226180	7	51.7	6	67	20	90	19	1	30	49	1.57
18225824--18225876	27	2.0	27	92	0	88	15	0	26	58	1.37
18225840--18225883	19	2.2	21	88	8	65	9	0	31	59	1.29
18225849--18226201	13	27.0	13	69	12	154	18	1	30	49	1.57
18225886--18225948	20	3.2	19	78	13	74	22	0	30	47	1.51
18225897--18225971	20	3.8	20	78	3	80	22	0	33	44	1.53
18226885--18226924	18	2.2	18	86	0	53	0	17	0	82	0.67
18227302--18227562	144	1.8	144	80	2	319	41	13	11	32	1.81
18228896--18228967	30	2.4	29	86	2	99	34	8	1	55	1.39
18228990--18229077	30	2.9	30	84	0	104	48	4	9	37	1.55
18231073--18231247	57	3.1	56	76	6	194	58	8	11	22	1.59
18235295--18235392	9	10.9	9	80	13	96	75	0	14	10	1.04
18235315--18235359	20	2.2	20	96	0	81	84	0	6	8	0.78
18235295--18235392	45	2.2	45	83	3	117	75	0	14	10	1.04
18235308--18235367	29	2.1	28	93	3	102	83	0	6	10	0.81
18235289--18235372	17	4.8	17	77	13	89	76	0	13	10	1.03
18235290--18235384	17	5.4	17	78	12	77	75	0	14	9	1.03
18235289--18235372	25	3.5	24	73	17	59	76	0	13	10	1.03
18236490--18236643	79	1.9	79	94	0	272	38	12	16	31	1.86
18236569--18236731	58	2.8	58	84	0	227	40	12	15	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18237037--18237336	41	7.2	41	80	7	261	25	11	18	45	1.83
18237037--18237336	82	3.6	83	79	6	295	25	11	18	45	1.83
18237625--18237669	12	3.7	12	77	16	56	24	0	2	73	0.95
18237608--18237676	25	2.7	25	88	2	102	24	2	4	68	1.22
18237896--18237931	12	3.0	12	92	8	56	66	16	8	8	1.42
18243411--18243496	43	2.0	43	93	0	145	41	10	10	37	1.74
18246447--18246486	21	1.9	21	94	0	71	20	0	12	67	1.22
18246433--18246499	22	3.0	22	82	10	73	20	1	14	62	1.39
18248052--18248118	16	4.2	16	80	0	80	68	0	1	29	0.98
18248067--18248125	21	2.9	21	80	10	68	67	0	1	30	1.00
18248054--18248132	11	7.5	11	72	13	58	69	0	1	29	0.96
18248894--18248938	19	2.3	20	81	11	58	46	6	0	46	1.29
18249646--18249702	21	2.7	22	73	13	66	49	1	5	43	1.35
18249648--18249702	20	2.7	20	82	2	65	49	1	3	45	1.30
18249668--18249738	19	3.8	19	76	12	67	53	2	2	40	1.30
18249674--18249774	36	2.7	39	79	13	97	56	2	3	36	1.33
18249688--18249746	17	3.2	19	78	11	59	57	1	0	40	1.09
18249836--18249893	19	2.9	20	82	5	64	39	3	1	55	1.27
18249995--18250042	20	2.5	19	83	6	60	45	2	0	52	1.12
18250071--18250116	17	2.7	18	86	6	60	32	6	0	60	1.22
18250178--18250305	10	13.3	10	72	8	79	36	1	1	60	1.16
18250178--18250306	19	6.8	19	73	10	104	37	1	1	59	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18250191--18250271	28	2.8	29	76	10	78	38	2	2	56	1.26
18252936--18254811	631	3.0	631	94	0	3207	36	11	10	41	1.76
18255277--18255319	18	2.4	18	81	11	52	76	4	6	11	1.13
18255791--18255828	19	2.0	20	84	5	51	52	26	5	15	1.64
18256254--18256339	20	5.2	18	68	30	50	51	8	1	39	1.39
18257726--18257768	12	3.6	11	84	12	50	2	16	0	81	0.79
18257726--18257781	13	4.3	13	79	6	60	1	19	0	78	0.84
18267570--18267598	14	2.1	14	100	0	58	37	27	6	27	1.82
18272299--18272333	17	2.1	17	88	0	52	37	20	14	28	1.91
18274039--18274063	13	1.9	13	100	0	50	40	24	0	36	1.55
18274674--18274706	16	2.1	16	94	0	57	33	3	6	57	1.38
18279427--18279478	14	3.8	13	79	18	52	17	3	1	76	1.02
18279499--18279637	59	2.3	64	82	7	173	51	9	7	30	1.62
18279660--18279701	15	2.8	16	78	10	52	59	0	9	30	1.29
18281969--18282070	36	2.8	36	87	0	150	42	14	14	28	1.85
18284389--18284429	21	2.0	21	85	0	55	29	12	17	41	1.85
18284580--18284651	22	3.0	23	76	17	67	33	9	12	44	1.75
18284674--18284735	24	2.8	21	80	11	63	35	6	17	40	1.76
18285037--18285218	17	10.9	17	70	9	88	34	14	9	41	1.78
18285238--18285303	34	1.9	34	87	0	96	36	10	9	43	1.71
18285252--18285320	34	2.0	34	82	0	84	34	14	10	40	1.80
18285365--18285514	77	1.9	77	87	2	221	35	10	8	46	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18302549--18302573	2	12.5	2	100	0	50	52	0	0	48	1.00
18308795--18308844	26	1.9	26	88	8	75	54	8	4	34	1.49
18308861--18308901	20	2.0	20	86	9	57	34	2	2	60	1.23
18308879--18308925	24	2.0	24	83	8	60	38	0	8	53	1.32
18311846--18311926	41	2.0	39	85	4	108	22	9	14	53	1.71
18311887--18312041	50	3.1	50	77	9	120	30	8	16	45	1.76
18312166--18312203	16	2.4	16	90	0	58	21	15	2	60	1.47
18313609--18313661	19	2.8	18	83	11	61	79	0	20	0	0.74
18313609--18313659	23	2.2	23	86	6	68	78	0	21	0	0.75
18323644--18324313	186	3.6	185	85	2	867	34	14	11	40	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129