genome.fa.s13.2.7.7.80.10.50.1000.87.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  87  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15545516--15545560	20	2.2	20	88	0	63	46	20	6	26	1.75
15547636--15547837	6	31.0	7	72	16	91	44	37	0	17	1.55
15547631--15547837	31	6.3	34	72	17	111	44	37	0	16	1.55
15547637--15547822	13	14.2	13	69	16	107	44	36	1	18	1.57
15547668--15547726	8	8.1	8	75	19	58	52	33	0	13	1.41
15547668--15547837	19	8.8	18	74	15	85	45	35	1	17	1.57
15547661--15547745	35	2.5	34	81	9	93	48	37	1	12	1.50
15547710--15547836	25	5.1	24	75	12	105	42	37	1	18	1.60
15547637--15547820	34	5.4	32	71	19	97	44	35	1	18	1.57
15548294--15548326	12	2.5	13	90	9	50	84	0	15	0	0.61
15549756--15549803	18	2.7	17	77	6	51	79	4	8	8	1.06
15552763--15552812	14	3.9	13	77	12	50	78	2	10	10	1.06
15553925--15553964	15	2.5	16	92	8	64	82	5	5	7	0.94
15553940--15553999	19	3.0	20	81	15	63	78	3	8	10	1.07
15555206--15555256	26	2.0	26	88	3	77	43	13	13	29	1.83
15555502--15555547	24	1.9	24	90	0	74	52	8	15	23	1.70
15555731--15555882	39	3.9	39	77	7	130	40	10	8	40	1.70
15555648--15555917	40	6.8	41	73	8	182	40	13	9	37	1.76
15555657--15555917	118	2.2	119	82	4	312	39	13	9	38	1.76
15556203--15556251	22	2.2	22	81	0	62	34	24	10	30	1.89
15556264--15556440	22	8.0	22	75	8	119	32	24	12	30	1.92
15556257--15556440	66	2.8	66	79	3	174	32	23	13	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15556894--15556930	10	3.7	10	85	0	56	51	13	8	27	1.69
15556896--15556940	20	2.3	20	96	3	83	53	13	4	28	1.59
15559011--15559152	27	5.1	28	82	12	118	45	36	0	18	1.50
15559012--15559152	7	20.3	7	78	11	148	44	36	0	18	1.50
15568013--15568215	59	3.4	59	73	8	167	42	7	10	38	1.69
15567977--15568215	121	2.0	124	85	5	335	42	8	9	39	1.69
15568679--15568729	22	2.3	22	78	18	61	11	7	3	76	1.13
15573746--15573772	2	13.5	2	100	0	54	51	0	0	48	1.00
15578038--15578085	22	2.1	21	85	11	60	64	4	0	31	1.12
15578274--15578345	28	2.6	28	95	0	126	29	18	13	38	1.89
15579233--15579384	44	3.3	44	81	8	137	40	17	14	27	1.88
15579301--15579683	49	7.8	51	78	7	251	44	16	10	28	1.81
15579267--15579730	47	9.7	47	78	5	306	44	15	10	28	1.81
15579268--15579730	96	4.8	95	76	6	353	44	15	10	28	1.80
15579301--15579731	143	3.0	144	85	3	495	44	16	10	28	1.80
15591963--15592026	21	3.1	21	77	4	69	70	3	0	26	1.02
15596544--15596593	25	2.0	25	100	0	100	52	4	16	28	1.61
15606135--15606190	24	2.5	21	78	15	67	57	8	19	14	1.63
15606135--15606184	24	2.1	24	92	0	82	58	10	20	12	1.62
15607020--15607084	33	2.0	33	96	0	121	56	10	9	23	1.61
15611726--15611762	12	3.1	12	100	0	74	32	8	24	35	1.85
15616597--15616638	20	2.2	20	87	8	61	42	9	9	38	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15618731--15618764	17	2.1	16	88	5	50	2	17	20	58	1.51
15623693--15623766	12	6.1	11	72	20	58	82	6	0	10	0.84
15623696--15623751	18	3.1	18	75	12	60	82	7	0	10	0.85
15623697--15623767	30	2.3	30	80	7	81	81	7	0	11	0.86
15626045--15626074	16	1.9	15	93	6	51	60	0	0	40	0.97
15626042--15626123	19	4.5	19	71	14	50	60	0	4	34	1.18
15627451--15627494	23	2.0	21	82	8	52	38	27	6	27	1.82
15636816--15636845	2	15.0	2	92	0	51	46	0	0	53	1.00
15641350--15641448	34	2.9	34	78	3	83	21	16	12	50	1.77
15641586--15641692	34	3.1	34	80	7	119	15	10	14	59	1.60
15641663--15641735	34	2.1	34	84	0	92	21	13	9	54	1.67
15641748--15641903	66	2.3	67	76	5	154	22	11	10	55	1.67
15641783--15641876	32	2.8	34	77	4	93	22	11	10	55	1.66
15641783--15641926	33	4.3	34	75	11	120	22	9	9	58	1.58
15641783--15641926	66	2.2	65	82	6	164	22	9	9	58	1.58
15641838--15641975	33	4.1	33	75	7	102	25	8	7	58	1.53
15643775--15644132	194	1.9	191	82	5	461	46	6	10	37	1.64
15647538--15647714	84	2.1	84	79	9	191	42	10	4	42	1.60
15650757--15650954	7	29.9	7	69	14	84	17	3	33	45	1.64
15650797--15650958	13	12.3	13	73	17	77	19	3	31	46	1.65
15650788--15650965	27	6.7	26	71	15	75	18	2	31	47	1.63
15650802--15650964	20	8.3	18	72	14	101	19	3	31	46	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15650707--15650964	20	12.8	19	67	16	87	17	3	31	48	1.63
15650970--15651070	49	2.1	49	83	3	123	43	11	12	31	1.79
15651755--15651796	22	2.0	22	90	4	68	59	4	14	21	1.53
15653054--15653129	33	2.3	33	86	0	107	39	19	14	26	1.90
15653100--15653305	57	3.6	57	80	3	202	41	20	13	24	1.88
15653201--15653330	57	2.3	57	85	2	172	40	21	15	23	1.91
15653717--15653804	37	2.4	37	81	9	101	39	9	21	29	1.84
15658675--15658717	21	2.1	20	87	12	61	48	0	18	32	1.48
15664969--15665007	17	2.3	17	86	0	51	2	15	0	82	0.79
15668163--15668244	38	2.2	38	90	0	128	31	7	23	37	1.82
15668099--15668236	66	2.1	67	88	2	206	35	7	23	32	1.84
15668421--15668452	16	2.1	16	88	11	50	0	12	0	87	0.54
15668421--15668458	20	1.9	20	88	0	58	0	10	5	84	0.77
15669062--15669102	18	2.2	19	86	8	57	60	4	2	31	1.30
15670270--15670481	20	10.9	20	76	9	113	17	1	33	46	1.57
15670275--15670412	7	20.9	7	73	14	96	17	0	35	46	1.53
15670316--15670405	12	6.9	13	72	20	55	18	1	33	46	1.57
15670343--15670412	19	3.6	19	94	5	115	15	0	37	47	1.46
15670316--15670451	26	5.6	25	71	18	99	19	1	33	45	1.59
15670276--15670412	13	10.4	14	71	16	78	17	0	35	46	1.54
15672483--15672556	33	2.2	32	79	11	78	21	27	1	50	1.57
15672554--15672600	3	16.0	3	86	4	60	0	27	0	72	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15672552--15672596	15	3.1	15	87	6	74	0	24	0	75	0.80
15672552--15672593	13	3.2	13	77	16	50	0	23	0	76	0.79
15680619--15680663	19	2.3	20	84	3	65	13	0	37	48	1.42
15680708--15680741	11	3.0	11	83	8	50	17	2	41	38	1.65
15680708--15680745	12	3.2	12	81	3	51	18	2	42	36	1.64
15680783--15680824	18	2.3	19	87	4	59	14	2	35	47	1.57
15680781--15680855	30	2.5	31	82	6	82	13	4	34	48	1.61
15680832--15680906	36	2.1	37	85	7	100	14	0	36	49	1.44
15680812--15680913	19	5.5	19	76	15	97	15	0	35	48	1.52
15680812--15680913	7	16.3	7	69	22	57	15	0	35	48	1.52
15680895--15680987	18	5.0	19	74	11	86	18	1	43	37	1.57
15685730--15685780	25	2.0	27	88	7	79	41	17	1	39	1.61
15685732--15685787	25	2.2	25	83	6	67	44	17	3	33	1.66
15688718--15689127	145	2.8	144	80	6	447	32	14	11	41	1.82
15693464--15693493	12	2.5	12	88	0	51	33	23	20	23	1.97
15700556--15700592	16	2.3	16	90	0	56	86	2	2	8	0.76
15701687--15702063	126	3.0	125	85	5	499	33	15	17	34	1.91
15702132--15702207	37	2.0	39	89	7	120	26	14	25	34	1.94
15702715--15703123	143	2.8	142	80	6	441	31	12	12	42	1.81
15707934--15707984	3	17.0	3	100	0	102	33	0	0	66	0.92
15708140--15708170	16	1.9	16	93	0	53	45	9	12	32	1.75
15710072--15710180	36	3.1	33	78	11	101	55	16	11	15	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15710165--15710253	36	2.5	36	79	3	90	53	14	15	15	1.73
15710476--15711004	36	14.8	36	68	9	181	52	14	15	17	1.75
15710505--15710646	71	2.0	72	83	4	180	53	14	13	18	1.73
15710477--15710990	179	2.9	179	89	2	721	52	14	14	17	1.74
15710684--15710825	71	2.0	72	82	6	173	54	16	12	16	1.72
15710798--15710980	71	2.6	70	75	4	188	51	13	16	18	1.75
15710835--15710990	35	4.4	35	74	8	118	50	12	17	18	1.77
15711042--15711229	72	2.6	71	78	5	189	52	18	13	15	1.75
15711166--15711351	36	5.2	36	74	5	144	52	17	15	13	1.74
15711167--15711347	71	2.5	71	76	4	195	51	18	16	13	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129