genome.fa.s13.2.7.7.80.10.50.1000.86.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  86  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15289699--15289759	25	2.5	24	82	10	70	42	16	18	22	1.89
15289955--15289998	22	2.0	22	95	0	79	43	13	11	31	1.80
15293636--15293720	23	3.6	23	90	3	116	40	20	27	12	1.89
15293867--15293910	22	2.0	22	95	0	79	43	13	11	31	1.80
15297412--15297442	2	15.5	2	100	0	62	48	0	0	51	1.00
15299999--15300539	269	2.0	269	98	0	1037	35	20	14	29	1.92
15304933--15305011	29	2.7	27	79	12	77	51	5	1	41	1.31
15304999--15305099	25	4.4	21	71	15	60	45	1	3	48	1.32
15305098--15305137	21	1.9	21	85	10	55	47	0	0	52	1.00
15305247--15305464	108	2.0	108	99	0	427	39	3	10	46	1.53
15305471--15305504	14	2.4	14	90	9	52	55	0	0	44	0.99
15306331--15306382	26	2.0	25	81	3	59	50	1	3	44	1.31
15306998--15307057	25	2.4	25	91	5	95	45	1	5	48	1.34
15307137--15307267	64	2.0	64	92	0	217	42	6	6	44	1.56
15307605--15307653	13	3.7	13	91	5	80	24	0	0	75	0.80
15307604--15307655	14	3.8	14	92	5	88	25	0	0	75	0.81
15308201--15308253	16	3.3	17	76	10	58	35	0	0	64	0.94
15308177--15308260	38	2.1	41	82	10	102	39	0	1	59	1.05
15308203--15308277	31	2.4	33	84	13	104	41	0	0	58	0.98
15308257--15308312	24	2.4	23	79	11	60	55	5	0	39	1.23
15313240--15313368	61	2.1	62	89	2	206	27	8	15	48	1.74
15314352--15314378	2	13.5	2	100	0	54	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15315832--15315917	42	2.0	42	80	8	95	12	16	4	66	1.40
15320253--15320334	31	2.7	31	77	9	87	47	13	6	32	1.67
15329118--15329170	14	4.0	13	85	7	56	83	1	1	13	0.82
15329117--15329170	9	6.0	9	76	6	56	81	1	1	14	0.86
15331680--15332728	522	2.0	521	97	0	1999	35	15	12	36	1.86
15333104--15333182	5	16.0	5	70	19	51	74	5	5	15	1.16
15333126--15333177	14	3.6	14	85	12	61	76	3	3	15	1.07
15335803--15335837	17	2.1	16	89	5	52	62	11	2	22	1.41
15341015--15341107	3	32.7	3	75	14	63	26	4	2	66	1.21
15341569--15341602	10	3.4	10	95	0	59	2	0	23	73	0.97
15342083--15342107	8	3.1	8	100	0	50	88	0	0	12	0.53
15353042--15353386	119	2.9	118	81	5	367	20	20	15	43	1.87
15353195--15353488	119	2.5	120	83	4	362	18	20	16	44	1.86
15354045--15354112	3	23.7	3	85	8	97	33	2	0	63	1.10
15354123--15354175	18	3.0	17	83	8	61	0	15	3	81	0.83
15354128--15354165	15	2.5	15	87	8	51	0	15	0	84	0.63
15354563--15354604	21	2.0	22	90	4	68	26	2	14	57	1.50
15359624--15359664	19	2.2	19	95	0	73	70	0	24	4	1.06
15359934--15359999	34	1.9	34	87	0	96	37	12	15	34	1.84
15359935--15360008	34	2.2	34	82	0	85	37	13	16	32	1.87
15360313--15360353	12	3.3	13	87	12	52	0	19	0	80	0.71
15360318--15360365	16	3.4	14	81	18	55	0	16	0	83	0.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15360313--15360365	13	4.0	14	80	9	58	0	16	0	83	0.66
15360354--15360596	129	1.9	128	83	6	314	24	13	10	51	1.71
15360804--15360828	8	3.1	8	100	0	50	0	12	0	88	0.53
15362509--15362561	22	2.4	22	93	6	90	49	0	0	50	1.00
15363838--15363878	20	2.0	20	100	0	82	46	9	24	19	1.80
15367292--15367335	21	2.1	21	100	0	88	27	18	13	40	1.88
15368225--15368254	15	2.0	15	100	0	60	46	6	6	40	1.56
15374697--15374728	12	2.7	12	100	0	64	46	9	9	34	1.68
15390749--15390838	46	2.0	46	86	0	126	38	16	7	36	1.78
15391033--15391076	22	2.0	22	100	0	88	40	9	13	36	1.76
15395284--15395328	22	2.0	22	87	8	65	42	6	8	42	1.62
15399472--15399514	22	2.0	22	90	0	68	44	6	11	37	1.68
15407239--15407288	21	2.4	21	100	0	100	46	14	20	20	1.84
15408038--15408122	25	3.4	25	80	9	84	40	15	24	20	1.91
15408060--15408128	26	2.7	25	82	10	77	44	13	23	18	1.84
15408346--15408389	22	2.0	22	90	0	70	43	11	11	34	1.77
15409249--15409289	3	13.7	3	100	0	82	34	34	0	31	1.58
15411910--15411935	6	4.3	6	100	0	52	15	0	0	84	0.62
15416694--15416812	51	2.2	52	80	5	132	53	4	6	35	1.47
15416835--15416878	19	2.3	19	96	4	79	50	9	0	40	1.34
15416854--15417091	55	4.3	55	77	9	211	50	5	7	36	1.55
15424655--15424779	45	2.7	45	78	9	128	39	9	15	36	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15424793--15424833	21	2.0	21	90	0	64	31	4	21	41	1.74
15426969--15427083	56	2.1	56	86	3	160	54	6	4	33	1.47
15427173--15427377	56	3.6	57	81	9	235	46	4	11	37	1.61
15427173--15427377	113	1.8	113	85	10	294	46	4	11	37	1.61
15429336--15429394	3	19.7	3	100	0	118	32	0	0	67	0.91
15429709--15429755	3	15.7	3	100	0	94	65	0	0	34	0.93
15443627--15443652	13	2.0	13	100	0	52	69	0	0	30	0.89
15443664--15443747	29	3.0	28	74	8	82	48	0	1	50	1.08
15445145--15445171	12	2.2	12	100	0	54	40	0	0	59	0.98
15454516--15454553	13	2.8	14	76	8	51	34	0	0	65	0.93
15454745--15454826	11	7.6	10	69	28	53	75	1	2	20	0.98
15454719--15454775	26	2.2	26	84	9	73	68	3	5	22	1.25
15454716--15454784	26	2.6	27	80	15	72	68	2	5	23	1.25
15454775--15454823	5	10.2	5	79	16	59	77	2	2	18	0.96
15454770--15454823	28	1.9	28	88	7	83	77	1	1	18	0.95
15454744--15454824	22	3.7	22	73	16	80	75	1	2	20	0.99
15454782--15454818	18	2.1	18	90	10	58	78	2	2	16	0.98
15455700--15455778	3	26.7	3	89	2	124	32	31	1	34	1.66
15455777--15455846	3	24.7	3	85	11	103	64	1	0	34	1.03
15455779--15455883	10	9.8	10	84	8	95	62	2	0	33	1.16
15458285--15458325	21	2.0	21	90	0	64	48	9	31	9	1.69
15459401--15459438	6	6.3	6	96	0	67	18	0	63	18	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15464354--15464435	30	2.8	30	78	9	78	21	2	17	58	1.50
15464711--15464749	18	2.2	18	86	9	53	25	0	5	69	1.09
15468673--15468710	9	4.2	9	89	0	58	47	10	10	31	1.72
15469933--15469972	16	2.5	16	87	0	53	42	5	15	37	1.68
15472509--15472555	21	2.3	20	82	7	60	29	12	10	46	1.76
15489346--15489705	181	2.0	181	90	1	569	23	14	9	53	1.69
15495516--15495564	22	2.2	23	81	3	55	75	2	2	20	1.00
15498318--15498352	16	2.2	16	89	0	52	62	0	20	17	1.32
15498722--15498790	36	1.9	36	87	0	102	20	26	28	24	1.99
15499277--15499342	31	2.1	31	91	0	105	22	6	16	54	1.64
15500563--15500698	68	2.0	68	95	0	245	38	13	16	30	1.87
15504511--15504562	23	2.2	24	86	10	72	73	0	15	11	1.11
15504509--15504586	16	4.8	16	77	13	70	75	0	12	11	1.04
15504509--15504586	27	3.1	24	74	13	77	75	0	12	11	1.04
15504558--15504627	21	3.3	22	79	16	76	78	2	11	7	1.05
15504598--15504673	39	2.0	39	84	7	102	76	0	19	3	0.94
15505810--15505857	21	2.3	20	82	10	60	35	12	12	39	1.81
15505848--15505925	10	7.4	10	80	11	75	28	8	19	43	1.81
15505872--15505950	34	2.4	34	89	2	115	32	8	13	44	1.75
15506426--15506835	41	9.8	41	78	6	353	24	12	17	46	1.82
15506426--15506835	123	3.3	123	80	7	393	24	12	17	46	1.82
15507111--15507179	5	12.8	5	77	17	50	17	4	4	73	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15508072--15508099	8	3.5	8	100	0	56	10	0	0	89	0.49
15510054--15510101	22	2.1	22	88	3	69	50	16	8	25	1.73
15510417--15510449	8	3.7	9	88	12	50	0	24	3	72	0.98
15523284--15523314	3	10.3	3	100	0	62	67	0	0	32	0.91
15529837--15529863	11	2.5	11	100	0	54	37	7	0	55	1.28
15532028--15532057	2	15.0	2	92	0	51	50	3	0	46	1.18
15533004--15533045	22	1.9	22	90	0	66	42	2	2	52	1.27
15534801--15534856	29	1.9	29	85	0	76	33	25	12	28	1.92
15545516--15545550	10	3.5	10	88	0	52	48	17	8	25	1.75
15545516--15545553	20	1.9	20	94	0	67	47	15	7	28	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129