genome.fa.s13.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  104  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18869514--18869662	68	2.2	67	86	4	192	37	10	14	37	1.80
18871953--18872075	63	2.0	63	93	3	212	30	24	15	30	1.96
18872234--18872264	2	15.5	2	100	0	62	51	0	0	48	1.00
18872264--18872290	2	13.5	2	100	0	54	51	0	48	0	1.00
18881671--18881704	15	2.3	15	89	0	50	5	17	5	70	1.28
18883196--18883276	39	2.0	41	90	4	130	48	6	9	35	1.62
18886118--18886182	12	5.4	12	70	5	51	60	9	1	29	1.37
18890001--18890112	51	2.2	51	82	3	127	47	9	7	35	1.64
18890048--18890374	164	2.0	164	90	0	510	38	10	14	36	1.80
18890972--18891067	5	18.8	5	70	20	58	18	3	3	75	1.08
18890978--18891067	12	7.2	12	72	18	76	18	2	3	75	1.05
18890965--18891030	18	3.6	18	83	8	71	15	4	3	77	1.06
18890972--18891067	17	5.6	16	75	17	70	18	3	3	75	1.08
18892022--18892104	13	5.8	13	73	18	51	21	2	2	73	1.06
18892024--18892072	25	2.0	25	84	8	64	22	2	2	73	1.04
18892038--18892114	5	14.8	5	70	15	50	20	2	2	74	1.07
18892024--18892111	46	2.0	45	88	8	135	22	2	2	72	1.07
18892085--18892126	17	2.5	17	84	3	50	19	4	2	73	1.12
18895033--18895066	10	3.4	10	91	0	59	88	0	11	0	0.52
18895351--18895400	25	2.0	26	88	4	75	78	6	6	10	1.10
18898205--18898314	29	3.9	30	74	18	94	49	0	0	50	1.07
18898231--18898305	13	5.6	13	74	10	62	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18898251--18898310	21	3.0	21	73	16	63	51	1	0	46	1.10
18898260--18898295	18	2.0	18	89	10	56	50	0	0	50	1.00
18898242--18898314	27	2.7	26	81	10	83	50	1	0	47	1.09
18899478--18899641	81	2.0	81	91	0	265	42	9	10	37	1.72
18907294--18907327	15	2.2	16	89	5	52	29	11	11	47	1.76
18910971--18911010	21	1.9	21	89	0	62	15	10	2	72	1.21
18917174--18917263	41	2.2	41	80	4	101	30	23	15	31	1.95
18917656--18917705	22	2.3	22	82	6	57	32	18	10	40	1.83
18917700--18917771	37	2.0	36	88	2	108	12	16	18	52	1.74
18917783--18917835	22	2.4	22	76	17	56	30	16	15	37	1.90
18917899--18917967	22	3.2	21	82	11	77	30	18	13	37	1.89
18917660--18918054	132	3.0	132	80	2	454	24	18	15	41	1.90
18918091--18918148	22	2.6	22	77	0	62	36	25	5	32	1.78
18918422--18918473	23	2.3	23	83	9	63	34	32	11	21	1.89
18918602--18918662	23	2.7	23	82	2	79	31	29	11	27	1.92
18918606--18918691	45	1.9	44	88	2	127	29	27	15	27	1.96
18918603--18918696	22	4.2	23	73	4	93	30	25	13	29	1.94
18918922--18919013	38	2.4	39	80	8	109	13	19	18	48	1.80
18919432--18919468	16	2.3	16	95	0	65	21	40	8	29	1.82
18920331--18920392	29	2.1	29	87	0	88	37	29	11	22	1.89
18920380--18920411	9	3.6	9	91	0	55	25	40	21	12	1.88
18920461--18920490	16	1.9	15	93	6	51	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18920459--18920495	9	4.3	9	80	13	51	35	0	0	64	0.94
18920786--18920819	12	2.8	12	90	0	50	52	0	0	47	1.00
18920958--18921030	35	2.1	35	92	0	119	56	26	0	17	1.42
18920986--18921031	21	2.2	21	88	7	67	54	30	0	15	1.41
18921007--18921188	14	12.4	14	67	15	57	49	31	1	17	1.57
18921035--18921090	29	1.9	29	85	0	76	53	25	1	19	1.55
18921049--18921184	59	2.3	58	82	8	168	50	31	2	16	1.57
18921080--18921173	30	3.2	30	75	6	93	47	36	2	13	1.55
18921093--18921200	30	3.7	29	75	8	110	49	35	1	13	1.54
18921195--18921242	21	2.3	20	85	3	69	54	22	2	20	1.55
18923326--18923356	16	1.9	16	93	0	53	16	3	0	80	0.83
18925293--18925334	3	14.0	3	100	0	84	33	0	0	66	0.92
18929579--18929654	39	1.9	40	84	12	104	40	0	1	57	1.07
18929589--18929655	33	2.1	32	83	8	82	40	0	1	58	1.07
18929707--18929748	21	2.0	21	85	4	57	59	0	0	40	0.97
18931281--18931336	25	2.3	24	74	20	62	41	3	3	51	1.36
18931681--18931722	14	3.0	14	79	6	50	45	0	0	54	0.99
18933309--18933345	17	2.2	17	90	0	56	56	21	10	10	1.64
18940675--18940800	67	1.9	67	83	4	166	34	9	4	50	1.56
18940832--18940891	21	2.9	21	76	11	61	40	6	0	53	1.27
18941478--18941544	21	3.2	22	72	17	63	35	4	5	53	1.46
18941952--18941991	20	1.9	20	85	10	53	32	7	2	57	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18942424--18942485	17	3.6	17	72	14	56	38	6	6	48	1.55
18942697--18942768	21	3.5	20	68	20	58	31	4	4	59	1.35
18943112--18943143	15	2.1	15	94	0	55	21	3	0	75	0.95
18942680--18943573	435	2.1	435	78	6	898	31	9	5	53	1.57
18945089--18945134	22	2.1	22	91	0	74	60	2	0	36	1.09
18945098--18945147	22	2.3	22	85	0	64	66	0	0	34	0.92
18951906--18951982	24	3.3	23	79	15	79	72	0	1	25	0.92
18951922--18951973	27	1.9	27	88	7	79	69	0	0	30	0.89
18954399--18954441	13	3.3	13	80	6	52	79	0	2	18	0.85
18954432--18954462	16	1.9	16	93	0	53	74	0	0	25	0.82
18956359--18956408	21	2.3	21	90	10	75	12	0	6	82	0.85
18956454--18956878	59	6.9	60	77	13	343	50	6	7	36	1.56
18956536--18956632	30	3.3	29	66	18	74	47	4	8	40	1.53
18956708--18956742	16	2.2	16	89	0	52	57	0	2	40	1.14
18956645--18956881	63	4.0	59	77	12	202	48	8	7	35	1.62
18960864--18960893	15	1.9	16	93	6	53	86	0	3	10	0.67
18962063--18962112	22	2.4	21	90	6	75	40	18	10	32	1.83
18962035--18962135	21	4.8	21	70	9	71	35	12	17	33	1.88
18962159--18962313	20	7.8	20	72	13	106	40	10	13	35	1.80
18962060--18962310	99	2.5	99	86	5	319	39	12	13	34	1.83
18962274--18962314	21	2.0	21	95	0	73	36	9	12	41	1.76
18962382--18962715	114	2.9	114	88	2	519	36	14	14	34	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18963005--18963191	45	4.2	44	84	4	207	25	12	16	44	1.83
18963016--18963191	90	2.0	89	85	5	239	26	11	17	43	1.84
18965102--18965175	33	2.2	34	83	13	91	10	0	12	77	1.01
18965102--18965175	34	2.1	35	85	11	100	10	0	12	77	1.01
18965181--18965209	12	2.3	13	94	5	51	72	0	0	27	0.85
18965213--18965529	60	5.1	60	74	13	255	49	5	9	35	1.59
18965213--18965529	61	5.1	61	75	13	252	49	5	9	35	1.59
18965234--18965474	132	1.8	132	88	3	369	48	4	9	36	1.57
18966879--18966911	16	2.1	16	88	5	50	60	6	0	33	1.21
18967208--18967326	9	12.7	9	69	11	60	61	1	4	32	1.25
18967198--18967272	38	1.9	39	89	5	116	58	1	1	38	1.15
18967198--18967279	40	2.1	38	86	4	110	62	1	1	35	1.11
18967305--18967353	25	2.0	25	88	8	73	69	2	2	26	1.10
18967448--18967522	25	2.9	27	78	13	77	65	4	1	29	1.19
18967448--18967524	26	2.9	28	72	14	72	66	3	1	28	1.17
18967616--18967678	20	3.2	20	95	2	110	42	0	0	57	0.99
18967592--18967709	32	3.4	32	74	18	94	38	1	0	58	1.14
18967637--18967791	52	3.0	53	76	17	146	35	1	2	60	1.22
18967624--18967788	17	9.5	16	74	9	71	35	1	2	60	1.21
18967668--18967754	8	10.4	8	68	12	50	29	1	3	65	1.16
18967663--18967808	51	2.9	48	80	13	136	33	2	2	60	1.25
18967767--18967820	27	2.0	27	85	7	74	35	3	1	59	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18967820--18967849	10	3.0	10	90	0	51	26	0	3	70	1.03
18968070--18968354	129	2.2	129	87	1	410	42	9	4	43	1.58
18968070--18968415	129	2.7	127	84	4	371	43	9	4	43	1.56
18968640--18968681	18	2.3	19	87	4	59	28	0	0	71	0.86
18968652--18968684	15	2.2	15	89	10	50	24	0	0	75	0.80
18970135--18970180	20	2.3	20	85	10	60	47	26	4	21	1.69
18970308--18970389	34	2.4	34	83	6	94	29	14	18	37	1.90
18971958--18971991	14	2.5	13	86	9	50	23	2	0	73	0.97
18972102--18972136	18	1.9	18	94	0	61	42	0	0	57	0.99
18972103--18972171	26	2.7	26	80	10	70	43	0	4	52	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129