genome.fa.s13.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  54  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10611395--10611432	19	2.0	19	89	0	58	36	7	5	50	1.54
10613351--10613386	19	1.9	18	94	5	63	2	8	5	83	0.89
10614934--10614971	11	3.3	12	82	10	53	34	0	2	63	1.09
10616024--10616054	14	2.2	14	94	0	53	54	3	0	41	1.16
10616146--10616250	32	3.3	32	78	5	106	43	5	5	44	1.51
10616364--10616397	16	2.2	15	89	5	50	52	0	0	47	1.00
10617684--10617714	14	2.2	14	94	0	53	54	3	0	41	1.16
10617806--10617910	32	3.3	32	80	5	108	42	4	5	46	1.48
10618024--10618057	16	2.2	15	89	5	50	52	0	0	47	1.00
10620484--10620572	6	14.8	6	93	0	70	32	12	1	53	1.45
10620499--10620527	3	9.7	3	100	0	58	34	31	0	34	1.58
10620526--10620582	3	19.0	3	96	0	105	31	0	1	66	1.02
10620675--10620713	19	2.1	19	90	0	60	41	7	7	43	1.62
10623045--10623210	71	2.3	71	79	3	181	50	11	19	18	1.77
10623053--10623278	36	6.3	35	74	11	163	49	10	19	21	1.78
10623060--10623270	107	2.0	108	83	2	273	46	11	19	21	1.81
10623053--10623278	72	3.2	70	77	9	190	49	10	19	21	1.78
10623167--10623318	71	2.1	72	82	4	191	46	9	19	24	1.79
10623053--10623294	107	2.3	107	79	5	267	48	10	19	21	1.78
10623185--10623328	71	2.0	72	85	4	193	47	7	19	25	1.76
10623309--10623501	36	5.4	37	74	9	143	51	11	18	19	1.75
10623407--10623514	36	3.0	37	81	10	125	50	12	16	19	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10623510--10623601	36	2.6	36	73	3	96	50	10	16	22	1.76
10623718--10623831	32	3.5	31	77	8	113	25	17	17	39	1.91
10623718--10623862	65	2.2	64	81	6	157	26	17	17	39	1.91
10624665--10624725	10	6.4	9	73	16	52	4	21	1	72	1.13
10624981--10625019	17	2.2	19	86	9	55	12	7	7	71	1.29
10625140--10625172	13	2.6	13	95	4	59	0	15	0	84	0.61
10628377--10628835	236	1.9	235	85	2	625	33	9	12	44	1.74
10628412--10629222	448	1.8	446	88	4	1238	32	9	12	46	1.73
10633145--10633196	26	1.9	27	88	7	79	25	9	23	42	1.84
10640144--10640176	16	2.1	16	94	0	57	39	6	0	54	1.25
10641767--10642536	201	3.8	202	79	3	775	34	12	11	41	1.79
10645483--10645554	19	3.8	19	74	7	83	20	15	20	43	1.88
10645570--10645657	13	6.5	13	75	14	61	15	3	23	56	1.54
10646134--10646162	2	14.5	2	100	0	58	51	0	0	48	1.00
10648206--10648244	20	2.0	20	90	10	62	35	0	2	61	1.10
10649999--10650033	14	2.3	16	90	9	56	34	0	0	65	0.93
10650704--10650763	8	7.5	8	83	5	68	8	13	0	78	0.96
10650682--10650747	16	4.0	16	78	7	53	4	15	1	78	0.98
10650681--10650737	28	2.0	28	82	6	69	3	15	1	78	0.96
10652667--10652724	29	2.0	29	82	0	71	25	13	24	36	1.92
10655938--10655976	18	2.2	18	90	9	62	12	0	38	48	1.42
10655944--10656243	7	45.4	7	68	15	97	18	1	33	46	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10655988--10656171	13	13.7	13	71	12	72	17	1	33	47	1.58
10655960--10656082	20	6.2	20	71	18	98	18	1	34	45	1.60
10655992--10656243	13	19.0	13	67	17	69	18	1	33	46	1.59
10656113--10656165	27	2.0	27	81	7	63	20	3	26	49	1.66
10656135--10656186	20	2.6	21	78	9	63	23	3	26	46	1.69
10656195--10656250	26	2.1	27	86	3	78	14	0	32	53	1.41
10656966--10657233	144	1.9	144	82	1	340	42	12	12	33	1.80
10658064--10658930	41	21.1	41	75	6	511	40	13	17	28	1.88
10658064--10658930	123	7.0	123	75	7	650	40	13	17	28	1.88
10658103--10658918	164	5.0	165	74	6	593	40	13	17	28	1.88
10658013--10658930	246	3.7	246	80	2	925	40	13	17	28	1.88
10659163--10659208	17	2.7	18	73	10	51	52	17	6	23	1.68
10659267--10659326	17	3.5	17	83	0	66	53	11	8	26	1.65
10659266--10659502	71	3.4	68	77	5	208	45	11	12	30	1.77
10661012--10661062	19	2.7	19	82	11	54	1	17	1	78	0.94
10661018--10661082	17	3.9	17	75	15	55	3	20	1	75	1.02
10661009--10661072	17	4.0	16	71	13	60	1	17	1	79	0.89
10661009--10661089	25	3.3	25	75	16	89	3	18	1	76	1.00
10661590--10661656	5	13.8	5	80	12	59	4	20	0	74	0.99
10663701--10663738	19	1.9	19	85	15	51	47	10	23	18	1.79
10664094--10664248	38	4.3	39	67	23	124	37	7	20	34	1.81
10664076--10664224	68	2.2	68	98	0	289	38	7	21	32	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10664177--10664319	39	3.7	39	75	4	157	37	8	18	36	1.81
10664545--10664569	13	1.9	13	100	0	50	8	24	0	68	1.16
10667882--10667912	14	2.2	14	94	0	53	41	22	6	29	1.78
10670669--10670703	9	3.8	9	96	3	61	82	0	0	17	0.66
10670668--10670705	10	3.9	10	93	6	69	81	0	0	18	0.69
10670669--10670705	19	1.9	19	100	0	74	81	0	0	18	0.70
10670698--10670739	18	2.3	18	87	4	57	64	0	21	14	1.29
10671870--10671901	16	1.9	17	93	6	57	46	0	18	34	1.49
10671968--10672097	45	2.8	45	79	11	156	41	5	14	38	1.69
10671970--10672097	24	5.6	23	76	13	113	40	5	14	39	1.70
10671958--10672105	69	2.2	66	84	6	199	41	4	14	39	1.67
10672228--10672291	23	3.0	21	71	13	58	34	7	15	42	1.76
10672208--10672311	45	2.3	45	80	4	113	37	7	16	38	1.77
10672692--10672720	15	2.0	15	93	6	51	41	10	13	34	1.79
10672784--10672817	16	2.1	16	89	10	52	38	11	17	32	1.86
10672817--10672904	34	2.6	35	85	5	110	25	15	20	38	1.92
10672849--10672898	17	2.9	17	67	21	50	24	16	20	40	1.91
10673943--10674002	26	2.5	24	72	15	61	66	0	25	8	1.19
10677244--10677349	6	16.2	6	74	21	72	17	0	33	48	1.54
10677239--10677343	25	4.0	25	76	17	81	16	0	35	47	1.53
10677244--10677349	14	8.0	12	76	14	68	17	0	33	48	1.54
10677259--10677325	19	3.5	19	76	11	66	16	0	34	49	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10677244--10677343	38	2.5	40	84	11	125	17	1	34	48	1.54
10683026--10683168	57	2.5	57	81	7	166	37	18	21	23	1.94
10690711--10690761	25	2.0	25	96	0	93	43	3	1	50	1.31
10697327--10697387	20	3.1	19	83	2	59	65	8	8	18	1.44
10705912--10706478	161	3.5	161	76	8	440	34	9	13	42	1.77
10709309--10709355	19	2.4	19	82	10	60	36	0	4	59	1.17
10714899--10714932	18	1.9	18	88	5	52	14	2	8	73	1.19
10714940--10714982	16	2.6	16	82	17	52	18	4	6	69	1.29
10716628--10716687	29	2.0	30	87	6	86	16	11	5	66	1.40
10716867--10716892	13	2.0	13	100	0	52	53	0	7	38	1.30
10719712--10719739	11	2.5	11	100	0	56	92	0	7	0	0.37
10721881--10721920	20	2.0	21	90	5	64	32	5	10	52	1.56
10721845--10721945	47	2.1	48	83	5	125	32	8	7	50	1.63
10723018--10723098	41	2.0	40	81	9	94	24	13	6	55	1.61
10723332--10723773	139	3.3	136	78	10	437	27	10	11	50	1.70
10723398--10723981	123	4.6	124	76	12	429	28	10	11	49	1.72
10723679--10723981	123	2.5	122	88	2	430	28	10	12	48	1.74
10726827--10726868	18	2.3	18	91	0	66	28	14	9	47	1.75
10726864--10726906	18	2.4	19	80	11	54	25	27	4	41	1.75
10727226--10727361	22	6.2	22	72	10	100	28	25	16	29	1.97
10727217--10727342	44	2.9	43	83	8	132	30	26	14	28	1.95
10727266--10727368	22	4.7	22	81	0	116	27	26	19	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10727266--10727397	66	2.0	66	86	0	183	29	25	16	28	1.97
10727342--10727556	44	4.9	44	74	6	141	31	22	14	31	1.94
10727498--10727571	22	3.4	22	68	7	60	29	18	16	35	1.93
10727848--10727889	22	1.9	22	85	0	57	42	30	9	16	1.80
10727913--10727970	22	2.6	22	86	0	71	32	27	12	27	1.92
10727978--10728299	43	7.5	43	79	10	322	31	12	15	40	1.85
10727978--10728299	127	2.5	127	83	6	382	31	12	15	40	1.85
10728561--10728590	12	2.5	12	94	0	51	23	3	6	66	1.30
10730927--10730958	15	2.1	15	94	0	55	25	9	0	65	1.22
10731211--10731240	14	2.1	14	93	0	51	53	30	6	10	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129