genome.fa.s13.2.7.7.80.10.50.1000.90.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  90  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16119331--16119381	20	2.5	20	83	0	66	41	27	0	31	1.56
16119413--16119451	20	2.0	20	90	5	62	43	41	2	12	1.56
16120494--16120542	14	3.4	14	89	10	80	14	12	16	57	1.66
16120496--16120542	16	3.1	16	93	6	80	12	12	17	57	1.65
16121692--16121741	20	2.5	20	83	0	55	52	10	8	30	1.64
16121712--16121751	20	2.0	20	90	0	62	50	7	7	35	1.59
16122012--16122415	145	2.8	146	76	11	398	30	13	15	40	1.85
16124108--16124142	13	2.6	14	95	4	63	82	0	14	2	0.77
16125664--16125701	20	1.9	20	88	0	58	23	13	13	50	1.76
16132215--16132777	188	3.0	188	99	0	1108	36	19	15	28	1.92
16136890--16136915	10	2.6	10	100	0	52	84	0	7	7	0.77
16137953--16138222	44	6.0	47	78	9	169	24	11	15	48	1.77
16137946--16138308	180	2.0	177	80	4	401	24	11	15	47	1.80
16137936--16138355	43	9.6	43	79	7	283	25	12	16	45	1.82
16139287--16139322	5	7.8	5	93	6	51	19	0	0	80	0.71
16139288--16139328	9	4.6	9	87	9	57	19	2	0	78	0.87
16139288--16139334	13	3.5	13	80	13	51	19	2	2	76	0.99
16139974--16140071	48	2.1	47	88	1	142	54	6	10	29	1.58
16140570--16140613	23	1.9	23	95	0	79	34	13	15	36	1.87
16142229--16142268	18	2.2	18	90	0	62	50	17	2	30	1.59
16150854--16150927	13	5.7	13	80	12	71	21	5	18	54	1.64
16150854--16150927	26	2.8	26	82	8	96	21	5	18	54	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16153726--16153828	30	3.4	29	69	15	73	31	16	19	33	1.94
16153726--16153844	62	1.9	62	91	0	193	31	15	18	35	1.92
16153744--16153840	29	3.2	29	73	11	95	32	15	17	34	1.91
16153819--16153905	32	2.7	33	78	5	88	39	16	9	35	1.80
16153771--16153959	94	2.0	94	80	6	213	35	16	12	34	1.87
16154043--16154130	33	2.6	33	80	5	97	30	17	20	31	1.95
16154395--16154545	32	4.6	33	73	9	114	33	15	16	34	1.91
16154395--16154490	33	2.9	32	75	15	97	33	17	14	34	1.91
16155442--16155508	25	2.6	25	83	11	73	1	16	1	80	0.86
16155470--16155515	21	2.2	21	88	3	67	2	15	0	82	0.76
16155436--16155516	24	3.2	25	74	22	80	1	18	1	79	0.88
16155473--16155538	27	2.4	28	78	14	75	6	18	0	75	1.00
16155880--16155923	14	3.2	13	78	15	52	2	4	20	72	1.13
16156013--16156064	24	2.2	24	82	6	61	1	19	0	78	0.84
16156020--16156067	20	2.5	19	80	12	53	2	14	0	83	0.74
16156033--16156069	14	2.6	15	91	8	60	0	13	0	86	0.57
16156019--16156070	23	2.2	24	86	6	72	1	15	0	82	0.75
16158490--16158530	12	3.4	12	89	0	55	53	12	14	19	1.72
16160229--16160270	21	1.9	23	85	9	61	76	2	2	19	1.01
16161732--16161773	17	2.3	18	80	8	50	26	4	23	45	1.73
16164050--16164092	20	2.1	20	86	4	59	53	0	18	27	1.45
16169425--16169498	13	5.8	13	72	3	51	21	2	24	51	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16169415--16169512	38	2.6	39	73	4	92	23	6	22	47	1.73
16169440--16169498	26	2.3	26	91	2	102	22	0	25	52	1.47
16171776--16171814	21	1.9	20	89	5	60	20	0	2	76	0.90
16171772--16171823	26	2.0	25	82	10	61	21	1	1	75	1.00
16171765--16171851	34	2.6	33	75	20	83	18	2	4	74	1.09
16173443--16173495	3	17.7	3	100	0	106	32	0	0	67	0.91
16173667--16173707	21	2.0	21	90	0	64	73	4	0	21	1.02
16175984--16176175	104	1.8	104	82	0	249	33	15	14	36	1.88
16176203--16176539	104	3.3	102	79	8	344	35	15	13	35	1.87
16175977--16176399	230	1.8	230	83	4	566	32	14	15	37	1.88
16176309--16176732	225	1.9	226	83	6	552	35	16	13	34	1.87
16176525--16176732	104	2.0	104	88	1	310	35	17	13	33	1.89
16177089--16177623	145	3.7	144	79	7	566	29	13	14	41	1.84
16179940--16179993	23	2.3	23	93	0	90	33	14	25	25	1.95
16179965--16180025	32	1.9	32	86	3	88	36	14	18	31	1.91
16180043--16180173	22	5.9	22	79	3	118	25	17	26	30	1.97
16180060--16180176	45	2.6	45	81	0	153	25	17	27	29	1.97
16180043--16180193	67	2.3	67	85	2	196	24	15	27	32	1.96
16180777--16180805	15	1.9	15	100	0	58	41	13	24	20	1.89
16183556--16183586	14	2.2	14	94	0	53	16	3	0	80	0.83
16187828--16187865	20	1.9	20	88	0	58	63	7	13	15	1.51
16188672--16189065	59	6.6	59	78	6	386	36	13	5	45	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16188676--16189065	178	2.2	178	81	5	441	35	13	5	45	1.65
16189059--16189091	16	1.9	18	88	11	52	51	0	0	48	1.00
16189077--16189293	60	3.6	59	81	8	222	34	10	7	47	1.66
16189887--16189926	10	4.0	10	86	0	53	67	15	2	15	1.34
16190539--16190601	31	2.0	33	81	12	78	42	14	19	23	1.87
16190524--16191020	86	5.8	85	74	8	343	46	14	18	20	1.84
16190711--16191023	172	1.8	171	83	3	414	46	14	19	19	1.84
16201408--16201741	119	2.8	119	84	7	412	34	15	6	43	1.72
16201408--16201742	59	5.6	59	83	5	390	34	15	6	43	1.72
16201607--16201919	167	1.9	164	87	4	459	36	13	5	45	1.66
16201803--16201918	59	1.9	61	85	3	164	33	12	6	48	1.65
16201745--16201940	59	3.3	59	79	9	161	37	9	4	47	1.57
16201958--16202000	22	2.0	21	86	4	59	46	4	4	44	1.45
16204302--16204672	200	1.9	201	79	7	432	36	11	8	42	1.73
16204941--16204989	16	3.1	15	77	8	53	71	0	2	26	0.97
16209386--16209526	70	2.0	70	84	2	185	23	14	33	28	1.94
16216073--16216235	67	2.4	67	83	8	197	27	9	4	58	1.50
16217967--16218020	22	2.4	22	93	3	90	46	1	0	51	1.11
16219466--16219509	3	14.7	3	95	0	79	65	0	2	31	1.05
16221500--16221599	23	4.7	21	86	11	125	6	2	11	81	0.95
16221688--16223916	35	63.6	35	70	13	626	51	11	17	19	1.76
16222264--16223254	245	4.0	241	76	10	720	50	11	18	19	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16223136--16223294	36	4.5	36	81	10	125	49	16	16	16	1.80
16224466--16224507	20	2.2	19	83	8	50	42	9	21	26	1.83
16224796--16225116	34	9.6	34	71	8	187	29	17	17	36	1.92
16224897--16225047	67	2.3	67	86	4	198	29	16	16	37	1.91
16224929--16225052	33	3.7	33	74	8	117	29	16	15	38	1.89
16225612--16225671	26	2.3	26	91	2	95	33	15	15	36	1.88
16226968--16227025	11	5.2	10	74	22	53	3	15	1	79	0.95
16226964--16227021	27	2.1	27	83	3	71	3	17	1	77	0.99
16226968--16227035	36	1.9	35	85	5	93	4	19	1	75	1.06
16228417--16228444	2	14.0	2	100	0	56	50	0	0	50	1.00
16229488--16229530	20	2.1	21	86	4	61	55	6	13	23	1.62
16238152--16238242	41	2.2	41	82	5	112	71	6	2	19	1.19
16238347--16238379	3	11.0	3	100	0	66	66	0	0	33	0.92
16241139--16241194	28	2.0	28	100	0	112	46	3	10	39	1.56
16242223--16242277	29	1.9	29	85	3	76	47	0	3	49	1.19
16242218--16242280	29	2.2	28	80	8	72	46	0	3	50	1.17
16242633--16242703	32	2.2	31	79	16	74	50	16	4	28	1.64
16242786--16242820	2	17.5	2	93	0	61	51	2	0	45	1.16
16243682--16243732	19	2.7	20	76	11	54	49	3	3	43	1.39
16243705--16243743	18	2.2	18	90	0	60	46	7	2	43	1.46
16246352--16246441	41	2.2	41	80	5	103	37	10	4	47	1.57
16246399--16246574	72	2.4	73	87	3	241	40	7	6	44	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16246664--16246745	41	2.0	41	82	0	101	42	8	2	46	1.47
16246839--16246981	74	1.9	74	87	2	207	37	6	6	49	1.53
16249564--16249599	17	2.1	18	89	5	56	83	0	2	13	0.76
16250348--16250396	14	3.7	13	81	10	55	18	2	4	75	1.06
16250347--16250391	17	2.6	18	86	10	58	17	0	4	77	0.92
16250432--16250465	17	2.0	17	88	11	52	82	2	5	8	0.93
16260717--16261214	43	11.3	43	76	9	312	27	10	15	45	1.80
16260717--16260895	48	3.8	48	80	7	206	25	11	15	48	1.78
16260710--16261233	86	5.9	86	76	7	419	28	11	15	44	1.81
16260988--16261265	129	2.1	128	81	6	301	29	10	16	43	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129