genome.fa.s13.2.7.7.80.10.50.1000.70.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  70  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13330259--13330312	20	2.7	20	79	2	63	11	9	1	77	1.06
13330276--13330354	34	2.4	34	81	8	99	17	7	1	73	1.13
13330405--13330454	21	2.3	23	80	16	63	8	8	2	82	0.93
13332692--13333325	185	3.4	186	84	6	759	38	9	8	43	1.68
13333593--13333631	20	2.0	20	89	0	60	69	0	2	28	1.02
13337628--13337781	20	7.8	20	81	2	123	14	4	34	46	1.66
13338284--13338327	20	2.2	20	91	0	70	6	9	4	79	1.04
13338698--13339058	142	2.5	140	82	6	395	38	12	15	33	1.84
13339164--13339230	30	2.2	30	94	0	116	28	8	19	43	1.81
13341347--13341405	30	1.9	30	86	3	82	67	10	11	10	1.42
13342824--13342855	17	1.9	16	93	6	55	18	0	15	65	1.27
13343246--13343290	19	2.4	19	80	0	54	46	22	11	20	1.81
13343334--13343408	19	3.9	19	85	0	105	42	25	14	17	1.87
13343401--13343436	14	2.8	13	91	8	56	52	25	2	19	1.59
13343443--13343483	20	2.1	20	86	4	57	46	21	12	19	1.82
13345435--13345489	26	2.1	26	86	6	76	47	0	12	40	1.42
13346069--13346097	10	3.0	10	95	5	51	72	0	0	27	0.85
13346089--13346202	59	1.9	59	87	5	167	53	4	7	35	1.48
13348722--13349022	60	4.9	58	81	10	289	49	5	11	33	1.63
13348951--13348983	14	2.3	15	89	5	50	54	0	0	45	0.99
13348796--13349022	60	3.8	59	87	5	303	48	6	10	34	1.63
13348796--13349063	60	4.6	59	83	7	289	46	7	11	34	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13350014--13350068	21	2.8	20	76	17	60	72	1	18	7	1.16
13350263--13350300	18	2.0	20	90	10	62	78	10	10	0	0.95
13351617--13351663	17	2.8	17	77	6	51	23	17	6	53	1.66
13361662--13361714	25	2.1	24	83	13	63	69	1	3	24	1.15
13361865--13361947	24	3.4	24	80	11	89	53	18	6	22	1.66
13361879--13361947	36	1.9	36	93	0	120	50	17	7	24	1.71
13361879--13361947	12	5.8	12	77	19	81	50	17	7	24	1.71
13362161--13362194	17	1.9	18	88	5	52	79	0	0	20	0.73
13362159--13362196	13	2.9	13	80	11	51	78	0	0	21	0.74
13365811--13365869	15	4.0	15	77	4	57	42	22	6	28	1.79
13365804--13365867	29	2.3	29	78	5	69	45	20	4	29	1.71
13375367--13375396	10	3.0	10	90	0	51	83	6	10	0	0.81
13392924--13392956	17	2.0	17	88	5	50	36	6	3	54	1.41
13393509--13393699	91	2.1	92	88	3	278	24	21	5	47	1.73
13395622--13395682	15	4.2	14	76	14	61	4	1	9	83	0.86
13395621--13395666	16	2.9	16	87	3	58	2	4	10	82	0.89
13395625--13395681	7	7.9	7	75	13	53	5	1	10	82	0.90
13395726--13395918	36	5.4	34	76	11	156	52	13	17	16	1.75
13395726--13395918	35	5.5	35	74	10	151	52	13	17	16	1.75
13395722--13395953	71	3.3	71	77	8	213	52	12	17	17	1.75
13397178--13397221	18	2.5	19	85	10	58	4	18	0	77	0.94
13397228--13397300	8	8.9	8	70	19	53	15	1	4	79	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13397233--13397296	15	3.9	15	72	18	56	14	1	4	79	0.96
13397239--13397310	33	2.2	34	81	16	82	16	1	5	76	1.05
13409213--13409416	87	2.3	90	83	8	263	24	21	8	46	1.78
13415321--13415354	16	2.1	17	89	10	54	44	8	5	41	1.60
13428407--13428444	10	3.8	10	83	13	51	13	21	0	65	1.26
13428411--13428455	20	2.2	20	84	0	54	13	22	2	62	1.42
13436720--13436855	70	1.9	71	85	7	188	25	14	13	45	1.82
13436746--13436877	70	1.9	70	83	7	171	27	14	13	44	1.82
13438015--13438081	30	2.2	30	84	5	82	34	20	2	41	1.68
13438387--13438446	18	3.5	17	76	21	63	10	6	1	81	0.93
13438389--13438450	17	3.7	17	72	12	56	9	6	1	82	0.91
13438548--13438608	25	2.5	25	79	12	65	22	4	11	60	1.50
13438601--13438657	11	4.7	11	72	19	51	29	0	8	61	1.26
13438543--13438619	24	3.2	23	72	16	66	24	3	10	61	1.45
13438578--13438660	38	2.2	38	88	0	121	25	1	9	63	1.32
13438619--13438710	24	4.0	24	69	11	75	27	2	8	61	1.37
13438633--13438701	33	2.1	31	86	7	93	26	2	8	62	1.39
13440838--13440878	22	1.9	21	85	5	55	53	4	7	34	1.50
13443354--13443437	24	3.6	23	83	3	96	29	4	5	59	1.42
13443372--13443426	13	4.5	12	73	17	51	27	3	7	61	1.39
13444459--13444691	45	5.2	45	80	7	231	36	9	10	43	1.72
13444452--13444691	89	2.6	91	81	4	272	36	9	10	44	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13444713--13444844	20	6.7	20	75	10	128	25	11	9	53	1.68
13444873--13444910	20	1.9	20	88	0	58	31	10	7	50	1.66
13446548--13446630	34	2.4	34	89	0	130	39	16	7	36	1.77
13449205--13449233	14	2.0	15	93	6	51	31	0	0	68	0.89
13449615--13449656	16	2.6	17	81	11	52	64	4	2	28	1.26
13449846--13450032	95	2.0	94	89	6	288	32	13	11	42	1.81
13450449--13450639	95	2.0	95	89	6	298	29	13	13	43	1.82
13453689--13453737	16	2.7	19	78	15	59	32	0	6	61	1.21
13454196--13454250	27	2.2	24	83	9	65	40	5	18	36	1.74
13454259--13454323	31	2.1	31	82	0	76	33	16	18	30	1.94
13454887--13455463	60	9.7	58	87	8	783	45	8	12	33	1.73
13459247--13459271	10	2.5	10	100	0	50	88	0	12	0	0.53
13459274--13459304	16	1.9	16	93	0	53	74	0	16	9	1.07
13460590--13460625	17	2.1	17	100	0	72	22	16	11	50	1.77
13460548--13460660	57	1.9	58	87	7	167	24	18	16	39	1.91
13460607--13461096	42	11.9	42	89	7	767	22	18	22	37	1.94
13460607--13461096	123	4.0	122	91	4	781	22	18	22	37	1.94
13460607--13461096	165	3.0	164	93	4	812	22	18	22	37	1.94
13461103--13461177	9	8.4	9	88	8	102	89	9	0	1	0.55
13461103--13461168	17	3.8	17	89	2	105	90	7	0	1	0.50
13461103--13461169	1	67.0	1	81	0	80	91	7	0	1	0.49
13461373--13461421	16	2.7	19	78	15	59	32	0	6	61	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13461439--13461481	18	2.4	18	84	7	52	27	0	6	65	1.18
13461473--13461512	14	2.4	18	80	19	52	17	5	2	75	1.10
13461946--13462008	31	2.0	31	87	0	90	31	17	22	28	1.96
13462419--13462462	23	1.9	23	90	0	70	11	6	2	79	1.01
13462570--13463092	60	8.8	59	88	7	711	44	7	13	34	1.72
13462575--13463092	119	4.3	118	87	7	714	45	7	13	34	1.71
13463977--13464017	17	2.4	17	91	0	64	56	9	12	21	1.65
13473674--13474562	356	2.5	356	85	1	1167	36	15	12	35	1.85
13477255--13477301	21	2.2	21	84	0	58	46	25	14	12	1.80
13481494--13481555	14	4.4	13	75	13	52	3	12	6	77	1.08
13481494--13481560	29	2.3	28	85	14	84	2	13	5	77	1.07
13481494--13481560	15	4.6	15	75	18	54	2	13	5	77	1.07
13490541--13490580	16	2.3	18	87	8	57	72	2	2	22	1.09
13506937--13506980	19	2.3	19	100	0	88	18	9	20	52	1.72
13507135--13507241	53	2.0	52	89	5	162	32	14	8	43	1.76
13509502--13509566	34	1.9	34	84	6	87	43	4	12	40	1.63
13510738--13510775	20	1.9	20	84	10	51	52	10	7	28	1.64
13510651--13511003	174	2.0	174	87	2	505	42	12	11	33	1.79
13516377--13516687	154	2.0	153	97	0	586	41	11	14	32	1.82
13518373--13518457	36	2.4	35	80	16	95	52	1	0	45	1.08
13518399--13518444	14	3.3	14	77	20	51	54	0	0	45	0.99
13518407--13518499	28	3.4	28	80	8	111	52	1	1	45	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13518418--13518510	11	8.5	11	72	19	61	51	1	2	45	1.20
13518387--13518510	66	1.9	64	83	6	160	52	1	1	44	1.20
13518517--13518821	29	10.7	30	69	13	114	51	2	3	42	1.34
13518418--13518573	69	2.3	66	84	3	186	52	1	2	42	1.26
13518571--13518671	52	1.9	52	86	4	141	51	2	2	42	1.32
13518906--13518987	28	2.9	28	79	3	83	57	2	2	37	1.25
13518891--13519098	21	10.1	21	74	13	155	50	2	3	43	1.31
13518891--13519098	41	5.0	42	73	17	148	50	2	3	43	1.31
13519004--13519131	62	2.1	62	81	8	145	43	1	5	49	1.35
13518996--13519202	20	10.8	20	72	11	114	42	2	4	50	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129