genome.fa.s13.2.7.7.80.10.50.1000.72.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  72  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13711130--13711171	2	21.0	2	95	0	75	50	0	2	47	1.14
13711345--13711396	19	2.6	19	80	17	61	42	0	7	50	1.31
13712593--13714491	709	2.7	699	83	7	2240	42	7	10	39	1.68
13713267--13714653	709	2.0	700	88	5	2062	42	7	10	39	1.66
13714315--13714350	17	2.1	18	94	5	65	52	5	0	41	1.24
13714752--13714812	27	2.4	25	75	22	63	50	1	4	42	1.33
13714723--13714856	40	3.2	40	75	16	130	47	1	3	47	1.29
13714792--13714853	14	4.6	14	66	22	51	48	1	0	50	1.10
13715613--13715662	22	2.3	22	80	13	59	44	0	4	52	1.20
13715896--13715985	41	2.2	41	86	3	130	51	1	2	45	1.21
13718789--13718813	13	1.9	13	100	0	50	80	0	20	0	0.72
13725168--13725230	2	31.0	2	82	3	72	50	1	3	44	1.27
13725169--13725224	29	1.9	29	92	0	94	51	1	3	42	1.29
13725210--13726228	513	2.0	513	94	0	1797	38	6	8	46	1.61
13733313--13733425	54	2.1	54	91	0	181	36	15	15	33	1.88
13735096--13735140	11	4.1	11	100	0	90	28	8	17	44	1.79
13739752--13739798	20	2.3	20	81	3	58	25	4	17	53	1.62
13758339--13758489	75	2.0	74	80	3	169	42	7	12	37	1.71
13758498--13758586	21	4.1	21	70	11	72	44	11	13	30	1.78
13758512--13758762	44	5.7	44	74	10	163	44	10	11	34	1.74
13758615--13758762	45	3.3	46	77	8	144	45	10	8	36	1.68
13759488--13759573	35	2.5	35	84	1	111	27	22	11	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13764471--13764675	105	2.0	105	88	1	304	41	11	10	37	1.75
13769460--13769509	23	2.3	23	80	13	52	72	2	6	20	1.16
13771758--13771815	26	2.3	26	96	3	109	41	3	3	51	1.35
13771886--13771913	2	14.0	2	100	0	56	50	0	0	50	1.00
13773344--13773368	4	6.2	4	100	0	50	24	28	48	0	1.52
13776805--13776908	3	34.3	3	80	12	106	60	4	0	33	1.24
13776801--13776971	64	2.6	64	78	13	172	58	7	1	32	1.35
13776815--13776967	57	2.8	56	81	9	172	56	7	1	33	1.39
13777171--13777451	120	2.3	119	79	3	321	44	11	23	21	1.84
13781372--13781400	14	2.1	14	93	6	51	82	3	0	13	0.79
13781372--13781442	20	3.4	21	79	11	58	74	5	4	15	1.16
13781931--13781978	19	2.4	20	82	6	62	50	31	4	14	1.62
13782329--13782375	19	2.5	19	83	10	53	65	6	0	27	1.16
13782328--13782375	22	2.2	21	82	7	60	66	6	0	27	1.15
13782367--13782407	18	2.3	18	86	0	64	56	7	0	36	1.27
13789068--13789111	2	22.0	2	85	0	61	45	2	4	47	1.35
13789068--13789117	8	6.5	8	81	9	50	44	4	6	46	1.47
13789076--13789167	6	14.8	6	85	6	67	42	10	8	38	1.71
13789164--13789204	6	6.8	6	85	0	55	31	0	17	51	1.46
13790451--13790510	29	2.1	29	87	6	86	50	1	5	43	1.34
13791317--13791361	23	2.0	23	81	0	54	71	4	8	15	1.28
13791710--13791740	14	2.2	14	94	0	53	45	3	0	51	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13795002--13795188	92	2.0	92	90	0	293	22	10	12	54	1.68
13796219--13796282	25	2.5	24	78	16	67	68	0	3	28	1.04
13796352--13796386	15	2.3	15	95	0	61	42	8	5	42	1.59
13799049--13799131	29	3.0	27	71	15	71	48	1	1	49	1.16
13802580--13803545	483	2.0	480	84	4	1248	43	10	19	26	1.83
13803878--13804023	73	2.0	73	98	0	283	19	22	19	39	1.93
13806633--13806678	23	2.0	22	88	12	67	23	2	8	65	1.32
13806635--13806693	29	2.1	28	81	9	66	28	1	8	61	1.35
13808032--13808116	10	8.7	10	71	5	66	57	3	4	34	1.37
13808020--13808095	29	2.6	29	81	12	91	55	3	3	36	1.37
13808068--13808135	19	3.6	19	79	15	77	57	2	4	35	1.34
13808069--13808154	38	2.3	37	86	6	111	60	2	4	32	1.30
13809361--13809388	1	28.0	1	100	0	56	0	100	0	0	0.00
13811147--13811180	16	2.1	16	100	0	68	58	29	0	11	1.33
13814856--13814899	3	14.7	3	90	0	70	65	2	2	29	1.16
13817386--13817452	29	2.3	29	82	7	75	40	13	0	46	1.43
13817399--13817499	29	3.5	28	76	17	82	43	14	1	39	1.57
13819287--13819415	31	4.2	31	74	0	105	33	10	22	34	1.88
13819657--13819859	56	3.6	56	78	2	185	30	11	21	36	1.89
13819992--13820029	6	6.3	6	90	0	58	28	2	2	65	1.19
13819998--13820066	18	3.9	18	75	5	61	20	0	10	69	1.17
13819998--13820066	12	5.8	12	81	1	68	20	0	10	69	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13820070--13820104	17	2.1	17	89	5	54	77	0	11	11	1.00
13820083--13820115	15	2.3	15	89	5	50	78	3	12	6	1.04
13821068--13821120	22	2.4	21	87	9	70	13	5	3	77	1.09
13821276--13821372	24	3.9	24	83	4	113	34	5	9	51	1.56
13821307--13821385	24	3.3	24	87	3	106	30	5	11	53	1.58
13821395--13821458	24	2.7	24	90	0	101	28	1	15	54	1.50
13821469--13821557	24	3.6	24	74	14	90	32	6	11	49	1.65
13821410--13821555	59	2.7	53	80	9	134	29	5	14	50	1.65
13821491--13821531	14	3.0	13	85	7	55	29	7	14	48	1.71
13825349--13825388	13	2.9	13	85	10	53	85	10	5	0	0.75
13826726--13826942	48	4.5	47	76	8	170	34	10	15	39	1.81
13826766--13826888	49	2.5	48	81	5	140	35	9	15	39	1.80
13826964--13827125	38	4.3	38	83	3	193	29	9	20	39	1.85
13827409--13827502	6	16.3	6	81	6	97	26	2	5	65	1.25
13827409--13827513	18	6.1	17	77	9	88	25	1	5	66	1.24
13827420--13827496	23	3.4	21	84	10	82	25	1	5	67	1.19
13827409--13827513	24	3.9	27	75	12	92	25	1	5	66	1.24
13827972--13828023	22	2.3	22	77	9	61	15	3	3	76	1.07
13828157--13828256	24	4.0	24	85	7	121	33	4	7	56	1.45
13828298--13828358	20	2.7	24	75	19	76	32	3	9	54	1.50
13828282--13828351	20	3.2	21	76	13	79	31	5	11	51	1.61
13828286--13828378	24	4.0	24	78	12	104	32	4	10	52	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13829126--13829388	56	4.7	54	76	8	215	34	14	17	33	1.90
13829114--13829389	112	2.5	113	77	8	285	34	13	18	33	1.90
13829619--13829673	27	2.0	27	100	0	110	18	10	32	38	1.85
13829726--13829876	56	2.7	56	71	17	132	31	16	21	31	1.95
13830423--13830580	84	1.9	83	86	3	228	24	13	22	39	1.90
13831511--13831549	3	13.0	3	100	0	78	66	0	0	33	0.92
13832096--13832127	3	10.7	3	100	0	64	65	0	34	0	0.93
13832372--13832418	23	2.0	23	83	0	58	63	0	8	27	1.23
13843674--13843699	6	4.3	6	100	0	52	50	0	0	50	1.00
13853550--13853578	2	14.5	2	100	0	58	48	0	0	51	1.00
13853818--13853858	20	2.0	20	95	0	73	26	7	19	46	1.76
13854929--13854970	13	3.0	14	83	16	52	47	0	2	50	1.14
13861383--13861433	26	2.0	25	88	11	77	58	0	0	41	0.98
13867734--13867761	8	3.5	8	100	0	56	89	0	10	0	0.49
13869623--13869665	22	2.0	21	90	4	68	62	6	0	30	1.21
13874277--13874339	22	2.8	23	78	19	62	47	4	3	44	1.40
13876095--13876128	16	2.1	16	88	0	50	44	8	11	35	1.72
13878851--13878978	50	2.6	48	75	15	136	51	4	25	18	1.65
13882172--13882213	21	2.0	22	90	4	68	54	0	0	45	0.99
13886571--13886685	53	2.2	53	90	1	178	21	17	15	45	1.85
13892221--13892251	2	15.5	2	100	0	62	51	0	0	48	1.00
13893228--13893273	25	1.9	24	91	8	76	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13893229--13893289	20	2.9	21	73	14	63	62	1	0	36	1.05
13893305--13893566	15	17.1	15	71	23	149	41	1	0	55	1.14
13893307--13893583	18	15.5	18	71	20	172	42	1	0	55	1.13
13893345--13893386	22	2.0	21	90	4	66	33	4	0	61	1.17
13893457--13893556	32	3.1	32	71	5	103	41	1	0	58	1.05
13893324--13893584	40	6.7	39	71	20	163	42	1	0	55	1.14
13895188--13895490	167	1.8	168	83	2	403	32	10	16	40	1.83
13896290--13896485	95	2.1	96	91	2	315	36	11	8	43	1.71
13896835--13896896	14	4.1	14	77	22	56	17	3	4	74	1.13
13896964--13897022	25	2.3	26	85	11	77	74	8	1	15	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129