genome.fa.s13.2.7.7.80.10.50.1000.88.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  88  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15711392--15711548	72	2.2	72	80	4	174	52	9	15	22	1.71
15711423--15711652	36	6.4	36	74	11	150	56	12	13	17	1.68
15711989--15712059	26	2.6	26	75	6	70	32	11	21	35	1.89
15721639--15721883	120	2.0	120	100	0	490	33	11	18	36	1.86
15723503--15723730	22	10.0	22	66	12	86	31	11	21	35	1.89
15723521--15723734	44	4.7	44	68	12	108	30	10	21	36	1.88
15723798--15723931	40	3.3	40	74	10	103	39	14	10	35	1.80
15724061--15724190	40	3.2	41	78	7	124	41	13	10	35	1.77
15724108--15724170	21	3.2	19	69	10	54	46	12	6	34	1.68
15724556--15724594	20	2.0	20	100	0	78	25	17	10	46	1.80
15726560--15726600	17	2.5	17	84	7	50	4	26	0	68	1.10
15727057--15727136	14	5.7	14	70	10	56	5	17	2	75	1.10
15727063--15727140	29	2.5	30	81	10	86	3	17	2	75	1.07
15727067--15727140	31	2.2	34	84	15	93	4	17	2	75	1.07
15730618--15730658	14	2.9	14	100	0	82	48	7	14	29	1.71
15730649--15730777	37	3.5	36	76	8	125	35	9	20	34	1.85
15733793--15733826	18	1.9	17	88	5	50	82	0	2	14	0.79
15734342--15734403	19	3.2	20	77	9	65	48	22	14	14	1.80
15736773--15737128	19	20.5	17	67	22	70	17	4	33	44	1.68
15736789--15736944	49	3.2	49	83	2	179	14	5	37	42	1.67
15736887--15736920	17	1.9	18	88	5	52	14	0	35	50	1.44
15736933--15736987	19	2.9	19	97	0	101	10	5	30	52	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15736938--15737063	7	19.7	7	67	18	60	17	2	32	47	1.60
15736939--15737067	69	1.9	69	85	0	177	17	2	31	48	1.60
15736958--15737019	12	5.0	12	71	7	52	17	1	35	45	1.59
15736938--15737069	38	3.5	38	77	6	117	17	2	32	47	1.60
15737211--15737289	36	2.2	36	81	4	97	10	2	43	44	1.51
15737220--15737293	19	4.0	19	78	7	71	10	4	40	44	1.58
15738743--15739001	139	1.8	141	81	5	328	45	12	9	32	1.74
15739473--15739531	21	2.8	21	78	2	64	69	5	11	13	1.34
15743900--15743946	16	3.0	16	79	17	62	38	2	8	51	1.45
15744282--15744336	17	3.2	18	85	10	64	40	0	3	56	1.17
15744282--15744327	17	2.8	17	93	3	76	39	0	4	56	1.19
15743921--15744390	130	3.6	129	79	4	407	39	5	11	43	1.64
15744412--15744512	36	2.8	36	78	10	100	40	2	14	41	1.61
15744394--15744512	36	3.3	35	71	14	91	38	3	14	43	1.62
15748232--15748268	18	2.1	18	90	5	58	67	2	0	29	1.04
15749972--15750025	27	2.0	26	86	10	74	42	0	1	55	1.10
15755375--15755434	18	3.6	18	72	22	67	46	0	1	51	1.10
15760861--15760905	20	2.2	21	84	4	56	53	22	0	24	1.46
15760954--15761189	80	3.0	80	86	3	314	42	24	8	24	1.82
15762338--15762454	62	1.9	61	84	8	157	41	6	14	37	1.73
15770711--15770773	33	1.9	33	100	0	126	34	20	15	28	1.94
15770996--15771035	15	2.6	16	81	18	57	62	12	5	20	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15771531--15771593	32	2.0	30	87	6	90	63	6	0	30	1.19
15771534--15771602	32	2.2	30	80	10	75	66	7	0	26	1.17
15772102--15772150	18	2.8	18	79	14	66	24	12	4	59	1.50
15781827--15781887	26	2.3	26	80	11	70	55	0	3	40	1.16
15781948--15782404	73	6.3	70	73	8	290	39	8	6	45	1.60
15781985--15782348	143	2.5	141	75	9	331	39	8	6	46	1.59
15787464--15788761	161	8.1	161	76	8	947	42	14	10	32	1.79
15787626--15788695	160	6.7	160	75	9	805	42	15	10	31	1.80
15798256--15798316	19	3.2	19	81	4	68	18	3	27	50	1.62
15798256--15798335	39	2.1	38	83	2	97	17	6	26	50	1.70
15798308--15798350	19	2.2	20	80	12	54	20	13	20	44	1.86
15798436--15798466	12	2.5	13	94	5	55	25	0	19	54	1.44
15798603--15798649	3	15.7	3	95	0	85	31	0	2	65	1.04
15798599--15798676	15	5.3	15	77	13	72	28	3	1	66	1.17
15804971--15805041	26	2.8	25	79	8	72	9	11	9	69	1.38
15806387--15806757	33	11.4	33	72	11	113	25	15	20	38	1.92
15806416--15806796	32	11.8	32	74	12	208	27	14	19	39	1.90
15806416--15806757	65	5.2	65	78	5	334	26	14	20	38	1.91
15808710--15808768	28	2.1	28	81	9	68	3	13	3	79	0.98
15812827--15812880	25	2.1	25	82	3	63	7	12	1	77	1.05
15812847--15812894	17	2.8	16	81	12	51	4	8	2	85	0.80
15817565--15817624	18	3.4	18	72	2	50	45	8	18	28	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15817787--15817866	20	4.1	20	79	6	74	20	5	32	42	1.73
15817836--15817877	19	2.2	19	86	0	57	21	2	35	40	1.66
15817915--15817978	7	10.1	7	73	19	52	15	1	37	45	1.56
15817925--15817954	12	2.6	12	94	5	53	20	0	30	50	1.49
15817918--15817953	18	2.1	17	89	5	54	19	0	30	50	1.48
15818012--15818058	18	2.6	18	90	6	69	21	0	34	44	1.52
15820126--15820163	20	1.9	20	88	0	58	26	15	13	44	1.83
15844154--15844256	47	2.2	47	84	3	127	18	18	26	36	1.94
15860416--15860463	20	2.5	20	82	3	62	50	12	10	27	1.73
15860610--15861007	143	2.8	142	81	7	441	32	13	11	42	1.81
15861921--15862103	88	2.1	86	89	5	287	45	9	20	24	1.81
15862599--15862630	3	10.7	3	93	0	55	65	3	0	31	1.08
15869975--15870112	36	3.9	36	76	9	124	14	20	15	49	1.80
15870348--15870424	36	2.2	36	81	6	95	16	14	15	53	1.74
15870685--15870927	71	3.4	71	76	6	181	18	19	12	50	1.78
15870480--15870939	35	13.0	35	68	9	130	18	18	12	50	1.78
15870977--15871184	35	5.9	35	75	3	114	19	18	14	47	1.82
15871232--15871305	35	2.1	35	85	5	96	18	24	13	43	1.86
15871435--15871529	37	2.6	36	80	4	111	20	18	14	46	1.84
15871438--15872100	35	18.8	35	72	10	196	16	21	15	47	1.82
15871474--15871818	105	3.2	104	75	8	302	16	21	14	47	1.82
15871854--15871972	34	3.4	34	80	4	139	14	24	19	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15871854--15871986	34	3.8	33	75	9	122	13	24	19	42	1.87
15872088--15872223	36	3.8	35	71	9	96	19	18	12	50	1.78
15872088--15872223	72	1.9	70	82	8	168	19	18	12	50	1.78
15873123--15873665	145	3.8	143	77	8	460	31	14	12	41	1.84
15887810--15887839	10	3.0	10	95	0	51	20	13	10	56	1.65
15890158--15890231	11	6.4	11	76	11	76	37	4	14	43	1.65
15890169--15890233	23	2.7	23	85	4	85	38	4	13	43	1.65
15890152--15890227	36	2.1	36	87	2	107	35	5	17	42	1.72
15895568--15895601	17	2.1	17	88	5	52	17	20	0	61	1.34
15896259--15896360	6	17.0	6	84	0	87	65	6	1	25	1.28
15896259--15896360	30	3.4	30	79	0	114	65	6	1	25	1.28
15911130--15911182	27	2.0	27	96	0	97	32	22	11	33	1.90
15911383--15911435	27	2.0	27	96	0	97	32	22	11	33	1.90
15911102--15911595	253	2.0	253	99	0	979	31	18	12	38	1.87
15915325--15915371	22	2.1	22	84	0	58	27	8	23	40	1.83
15915509--15915593	32	2.6	33	81	5	93	18	23	10	47	1.80
15915529--15915781	32	7.9	32	68	11	101	20	22	9	47	1.79
15915535--15915663	32	4.0	34	74	11	110	17	24	11	47	1.80
15915530--15915776	95	2.6	94	73	12	225	20	23	9	46	1.79
15918136--15918167	13	2.5	13	94	0	55	0	12	0	87	0.54
15918515--15919059	144	3.8	142	77	5	513	41	15	12	31	1.83
15920503--15920682	95	1.9	95	81	4	220	42	11	10	35	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15924283--15924325	22	2.0	22	86	9	61	20	2	2	74	1.04
15924504--15924953	85	5.2	84	79	6	357	47	13	18	21	1.82
15936340--15936641	113	2.7	113	84	2	367	35	11	6	46	1.67
15936340--15936641	57	5.4	57	88	3	362	35	11	6	46	1.67
15939882--15939932	22	2.3	22	86	6	68	58	0	1	39	1.09
15940097--15940132	11	3.3	11	100	0	72	47	8	0	44	1.33
15940646--15940675	1	30.0	1	93	0	51	0	3	0	96	0.21
15951483--15951560	39	2.0	39	97	0	147	37	12	21	28	1.90
15964081--15964116	15	2.3	16	95	4	65	41	8	0	50	1.33
15972566--15972889	163	2.0	163	98	0	621	21	16	21	40	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129