genome.fa.s13.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  44  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8767596--8767707	28	3.9	28	70	15	84	39	0	2	57	1.19
8770142--8770186	20	2.3	20	84	3	56	24	4	0	71	1.05
8770150--8770211	20	3.0	20	71	15	63	22	3	3	70	1.16
8770150--8770221	22	3.3	23	70	18	64	23	2	2	70	1.13
8770143--8770236	22	4.2	22	70	16	61	24	3	2	70	1.13
8770443--8770492	19	2.7	18	75	9	55	72	6	0	22	1.07
8770446--8770492	9	4.9	10	82	7	53	70	6	0	23	1.10
8771170--8771202	17	1.9	17	93	0	57	54	12	9	24	1.66
8772745--8772770	2	13.0	2	100	0	52	50	0	0	50	1.00
8773226--8773326	42	2.4	42	81	5	114	38	10	12	37	1.79
8773448--8773957	49	10.3	49	73	10	342	39	16	12	31	1.86
8773755--8773908	52	3.0	53	75	16	146	41	18	10	29	1.83
8782212--8782249	19	2.0	19	89	0	58	44	7	18	28	1.78
8784322--8784383	29	2.1	29	84	0	79	46	1	3	48	1.28
8784529--8784582	21	2.5	21	85	8	65	50	3	1	44	1.30
8784542--8784626	20	3.9	21	73	15	66	52	3	3	40	1.36
8784542--8784626	43	1.9	46	86	11	124	52	3	3	40	1.36
8784542--8784657	43	2.6	44	80	11	114	54	2	3	39	1.31
8784670--8784771	37	2.9	35	77	18	99	45	0	1	51	1.19
8784796--8784856	28	2.3	27	82	5	70	60	4	0	34	1.18
8786050--8786144	48	2.0	48	83	4	120	15	20	24	40	1.91
8786995--8787022	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8788483--8788526	24	1.9	22	86	9	61	25	0	13	61	1.32
8788496--8788539	22	2.0	22	86	0	61	27	0	13	59	1.35
8788680--8788748	25	3.0	22	74	15	68	60	0	0	39	0.97
8788686--8788728	14	3.3	14	75	18	56	67	0	0	32	0.91
8788717--8788759	23	1.9	22	86	13	61	60	0	2	37	1.10
8793419--8793461	20	2.2	20	100	0	86	23	9	30	37	1.86
8795804--8795829	3	8.7	3	100	0	52	30	0	0	69	0.89
8795748--8795899	80	1.9	80	94	2	270	29	3	10	55	1.51
8796164--8796194	3	10.3	3	100	0	62	35	0	0	64	0.94
8796989--8797090	37	2.8	37	87	1	152	50	5	13	30	1.66
8803665--8803699	19	1.9	19	88	11	56	45	0	0	54	0.99
8807689--8807723	8	4.4	8	85	0	52	8	5	0	85	0.73
8807681--8807725	24	1.9	23	90	4	72	8	8	0	82	0.85
8808652--8808680	12	2.3	13	94	5	51	13	0	3	82	0.79
8809819--8809949	31	4.2	31	73	13	117	38	13	14	33	1.86
8809839--8809970	31	4.2	32	70	16	107	37	14	13	34	1.85
8809805--8810016	93	2.3	92	83	4	266	38	14	15	32	1.87
8809966--8810154	29	6.5	29	67	16	86	38	16	14	29	1.89
8810148--8810222	31	2.4	31	82	8	98	30	18	17	33	1.94
8819401--8819435	6	6.0	6	86	6	54	31	2	17	48	1.61
8820063--8820100	3	12.7	3	88	0	58	5	0	26	68	1.11
8820057--8820100	9	4.9	9	94	0	61	9	0	22	68	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8820102--8820139	3	12.7	3	94	0	67	0	28	2	68	1.03
8820142--8820166	3	8.3	3	100	0	50	32	0	0	68	0.90
8823481--8823675	63	3.1	64	76	8	170	38	12	11	37	1.80
8828529--8828557	6	4.8	6	100	0	58	68	0	17	13	1.20
8830088--8830469	157	2.4	158	83	3	446	33	6	16	43	1.74
8832411--8832466	23	2.5	22	76	5	58	50	3	3	42	1.37
8832908--8832960	27	2.0	27	88	0	79	50	15	5	28	1.66
8834553--8834598	19	2.4	19	81	0	56	26	2	30	41	1.68
8834569--8834781	7	32.1	7	68	16	80	23	0	30	44	1.60
8834575--8834611	13	2.9	13	88	4	58	27	0	24	48	1.51
8834586--8834637	20	2.6	20	85	8	79	26	0	26	46	1.53
8834593--8834775	27	6.9	26	72	15	119	22	1	31	44	1.60
8834569--8834689	13	9.2	13	67	17	56	25	1	28	44	1.64
8834676--8834742	34	2.0	34	94	5	118	22	0	32	44	1.53
8834664--8834778	34	3.4	34	81	9	112	22	0	32	45	1.53
8834755--8834836	18	4.6	18	71	24	57	20	2	30	46	1.64
8834925--8834966	19	2.2	19	91	0	66	14	2	42	40	1.58
8834901--8834999	45	2.2	46	82	8	114	18	1	39	41	1.57
8834940--8835005	27	2.5	27	87	7	91	16	0	40	42	1.48
8838496--8838520	13	1.9	13	100	0	50	92	0	8	0	0.40
8838498--8838522	12	2.1	12	100	0	50	92	0	8	0	0.40
8839453--8839488	3	12.3	3	94	5	65	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8840271--8840312	22	2.0	22	86	13	61	23	2	7	66	1.28
8840824--8840860	20	1.9	19	89	10	58	48	0	0	51	1.00
8849071--8849111	21	1.9	22	85	5	57	2	14	2	80	0.92
8856148--8856186	15	2.6	15	87	0	60	38	7	2	51	1.44
8856232--8856303	34	2.1	34	87	10	103	19	6	6	66	1.38
8856670--8856694	9	2.8	9	100	0	50	76	12	0	12	1.04
8859208--8859234	8	3.4	8	100	0	54	11	11	0	77	0.99
8861083--8861112	14	2.1	15	93	6	53	30	13	23	33	1.93
8867211--8867327	38	3.1	38	86	2	155	35	19	9	35	1.84
8870901--8871055	8	18.8	8	73	17	86	76	1	16	5	1.05
8870902--8871044	9	14.6	9	68	20	74	76	2	16	4	1.05
8870888--8871055	9	16.6	10	67	16	62	76	1	16	5	1.07
8870938--8871028	21	4.6	20	76	14	75	76	1	16	5	1.02
8870902--8871061	29	5.4	27	70	21	85	76	1	15	5	1.05
8870921--8871062	13	10.9	12	70	19	58	76	2	16	5	1.08
8870979--8871061	41	2.0	40	84	11	107	78	1	14	6	1.00
8870905--8871055	34	4.3	33	68	20	92	76	1	15	5	1.05
8871924--8872000	34	2.2	35	81	6	86	28	1	1	68	1.05
8877651--8877707	24	2.4	24	79	5	71	24	14	22	38	1.91
8878053--8878261	45	4.6	44	74	14	129	36	6	15	41	1.74
8878037--8878347	44	6.9	44	73	11	206	35	7	14	43	1.73
8878523--8878608	34	2.5	34	77	7	102	37	13	11	37	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8878523--8878607	17	5.0	17	70	5	64	37	12	11	37	1.81
8878615--8878721	37	2.9	37	76	12	105	24	14	19	41	1.89
8878634--8878909	18	15.2	18	69	13	120	28	14	17	39	1.88
8878899--8878963	18	3.7	17	73	20	53	38	13	9	38	1.77
8882287--8882357	21	3.5	21	74	21	71	49	1	0	49	1.09
8882302--8882344	17	2.7	16	89	10	70	51	0	0	48	1.00
8882287--8882364	38	2.0	40	85	9	108	51	1	0	47	1.09
8882450--8882488	20	2.0	19	90	5	60	43	2	0	53	1.14
8882456--8882495	19	2.0	20	85	4	55	50	5	0	45	1.23
8883959--8884039	20	4.4	18	70	21	51	49	2	1	46	1.23
8884010--8884312	20	14.6	20	66	20	81	45	3	2	47	1.34
8884013--8884075	29	2.2	27	78	13	65	47	1	1	49	1.20
8884082--8884260	39	4.5	40	69	15	95	42	4	2	50	1.37
8884247--8884286	21	1.9	21	85	10	55	50	5	0	45	1.23
8884274--8884323	20	2.5	20	83	0	64	56	2	4	38	1.30
8884372--8884428	19	2.9	20	75	15	64	45	0	1	52	1.11
8884405--8884499	10	9.5	10	72	13	70	41	3	2	53	1.28
8884150--8884499	39	8.8	39	66	17	109	44	4	2	48	1.35
8885843--8885883	20	2.2	18	86	8	55	70	4	0	24	1.06
8886005--8886033	12	2.5	12	94	5	51	44	0	0	55	0.99
8888417--8888460	18	2.4	18	88	0	61	50	11	0	38	1.39
8892408--8892481	6	12.3	6	90	5	78	22	1	2	72	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8892417--8892484	6	11.3	6	93	0	82	22	1	1	75	0.97
8892820--8892866	19	2.5	19	89	0	76	29	6	25	38	1.81
8893286--8893330	14	3.3	14	84	3	56	8	6	0	84	0.78
8893286--8893322	19	1.9	19	88	0	56	8	8	0	83	0.80
8893305--8893335	14	2.2	14	94	0	53	12	0	3	83	0.75
8893379--8893452	32	2.2	33	83	4	87	54	5	6	33	1.50
8895450--8895479	11	2.8	11	95	5	53	83	0	16	0	0.65
8896382--8896416	18	2.0	17	88	5	52	60	5	0	34	1.21
8897887--8897933	20	2.4	18	80	13	58	17	8	2	72	1.19
8898052--8898077	13	2.0	13	100	0	52	84	0	0	15	0.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129