genome.fa.s13.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  19  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3656527--3656597	24	2.9	24	93	2	115	21	15	11	52	1.74
3673796--3673832	12	3.1	12	85	14	58	72	0	0	27	0.84
3673796--3673846	24	2.0	26	88	11	79	70	0	0	29	0.87
3673873--3673950	10	7.0	10	73	18	57	53	1	0	44	1.08
3673886--3673943	13	4.6	13	74	20	52	51	1	0	46	1.11
3673906--3673944	14	2.8	13	85	11	51	56	2	0	41	1.13
3673988--3674036	22	2.3	22	86	10	66	34	8	0	57	1.29
3674010--3674051	13	3.2	13	90	6	59	38	4	0	57	1.20
3673991--3674060	35	2.0	34	81	15	81	37	7	0	55	1.27
3675488--3675529	11	3.8	11	83	0	57	26	0	23	50	1.50
3675554--3675659	52	2.0	52	83	7	135	42	7	23	26	1.80
3677584--3677621	16	2.4	16	95	0	67	2	0	34	63	1.09
3678294--3678450	52	3.0	52	86	1	181	40	8	25	26	1.83
3678560--3678658	48	2.1	48	100	0	198	20	5	41	33	1.74
3679774--3679851	38	1.9	38	82	10	93	38	0	3	57	1.17
3682227--3682264	2	19.0	2	94	0	67	47	0	2	50	1.15
3687369--3687396	2	14.0	2	100	0	56	50	0	0	50	1.00
3693425--3693458	17	2.0	17	88	0	50	52	0	0	47	1.00
3693544--3693604	27	2.3	27	88	0	86	47	0	1	50	1.10
3694747--3694776	5	6.0	5	92	0	51	20	3	0	76	0.92
3700950--3701001	25	2.1	25	85	0	77	40	3	1	53	1.30
3701743--3701776	18	1.9	17	88	5	50	44	0	5	50	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3703170--3703195	9	2.9	9	100	0	52	42	0	0	57	0.98
3705758--3705825	28	2.5	28	76	9	68	39	5	4	50	1.47
3705852--3705904	28	1.9	27	82	17	65	50	1	7	39	1.41
3706788--3706837	20	2.5	21	83	6	59	44	0	2	54	1.11
3706865--3706897	16	2.1	16	94	0	57	63	0	0	36	0.95
3707490--3707536	24	2.0	24	91	0	76	40	2	2	55	1.24
3707500--3707542	12	3.6	12	74	0	50	46	0	0	53	1.00
3708268--3708301	18	1.9	17	88	5	50	44	0	5	50	1.26
3709239--3709280	15	2.9	15	86	6	61	61	0	0	38	0.96
3714302--3714344	2	22.0	2	85	4	61	53	0	44	2	1.13
3720577--3721892	329	4.0	329	97	0	2465	32	16	18	32	1.93
3723368--3723425	20	2.6	22	77	20	59	56	1	1	39	1.19
3724877--3724902	2	13.0	2	100	0	52	50	0	0	50	1.00
3736070--3736100	2	15.5	2	100	0	62	0	51	0	48	1.00
3743782--3743832	22	2.1	25	82	13	63	39	0	3	56	1.18
3743781--3743836	25	2.3	26	76	20	66	41	0	3	55	1.17
3751203--3751261	31	1.9	31	92	0	100	49	0	3	47	1.18
3751436--3751495	3	21.0	3	76	10	54	33	0	0	66	0.92
3751437--3751470	17	1.9	18	94	5	61	26	0	0	73	0.83
3751436--3751498	27	2.3	27	78	5	74	31	0	0	68	0.90
3752597--3752652	11	5.0	11	73	8	51	55	0	0	44	0.99
3753570--3753603	18	1.9	18	88	5	52	73	0	0	26	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3761019--3761048	12	2.5	12	88	0	51	66	0	23	10	1.21
3764657--3764689	7	4.7	7	100	0	66	60	0	0	39	0.97
3765082--3765110	14	2.0	15	93	6	51	62	0	0	37	0.96
3765314--3765356	16	2.7	16	77	0	50	60	0	0	39	0.97
3765454--3765490	18	2.1	19	85	10	51	56	5	0	37	1.22
3768602--3768626	2	12.5	2	100	0	50	48	0	0	52	1.00
3783421--3783513	40	2.3	40	94	0	159	37	22	11	27	1.89
3795340--3795374	18	2.0	17	88	5	52	0	17	2	80	0.84
3796256--3796309	22	2.5	22	91	5	85	50	0	0	50	1.00
3796262--3796304	19	2.4	18	85	14	54	53	0	0	46	1.00
3797762--3797823	19	3.3	19	75	20	58	35	1	11	51	1.47
3797762--3797805	20	2.3	19	84	11	54	38	0	11	50	1.39
3797903--3797947	8	5.8	8	85	12	58	71	0	4	24	1.05
3797905--3797938	15	2.3	15	94	0	59	73	0	2	23	0.97
3797903--3797946	23	1.9	23	86	9	63	70	0	4	25	1.06
3797913--3797947	15	2.3	15	90	5	52	74	0	2	22	0.95
3799180--3799208	10	3.0	10	95	5	51	72	0	0	27	0.85
3799829--3799894	12	5.3	12	74	16	55	66	0	1	31	1.01
3799826--3799896	22	3.5	20	72	14	56	67	0	1	30	0.99
3799831--3799899	20	3.6	19	70	20	54	66	0	1	31	1.00
3811096--3811151	19	3.3	19	72	27	70	53	7	0	39	1.28
3811096--3811164	32	2.2	32	94	0	120	53	7	1	37	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3811343--3811416	37	2.0	37	97	0	139	36	17	8	37	1.80
3817735--3817786	22	2.4	21	83	3	59	46	0	0	53	1.00
3818129--3818181	28	2.0	26	92	7	88	32	0	0	67	0.91
3818129--3818177	14	3.5	14	76	17	57	30	0	0	69	0.89
3818913--3818942	15	2.1	14	93	6	51	50	0	0	50	1.00
3820442--3820720	147	1.9	147	82	2	355	33	13	26	26	1.93
3824104--3824166	3	20.7	3	81	3	54	53	3	38	4	1.38
3830601--3830661	27	2.2	28	82	8	72	59	1	1	37	1.17
3830870--3830899	5	6.0	5	92	0	51	36	23	40	0	1.55
3830866--3830899	10	3.3	10	91	4	50	35	26	38	0	1.57
3836762--3836794	16	2.1	16	100	0	66	30	0	18	51	1.46
3838461--3838503	21	2.0	21	95	0	77	30	13	13	41	1.84
3838513--3838565	27	2.0	27	92	0	88	28	20	11	39	1.87
3841757--3841836	39	2.1	39	97	0	151	52	23	7	16	1.69
3844474--3844540	34	2.0	34	90	0	107	32	10	20	35	1.87
3846293--3846346	27	2.0	27	96	0	99	57	0	3	38	1.17
3846292--3846375	27	3.5	22	73	20	62	54	0	2	42	1.13
3847033--3847080	25	1.9	25	83	8	62	52	6	8	33	1.57
3849896--3849930	14	2.4	14	90	4	52	62	14	0	22	1.31
3849920--3849960	21	2.0	21	90	4	66	65	21	0	12	1.25
3852407--3852467	24	2.6	23	84	5	86	44	0	3	52	1.17
3854855--3854903	24	2.0	24	100	0	98	26	20	20	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3855388--3855529	23	6.1	23	72	11	94	59	1	1	38	1.15
3855326--3855498	57	2.9	59	80	13	196	56	1	1	41	1.14
3855328--3855519	39	4.8	38	76	12	143	57	1	1	40	1.13
3855355--3855516	34	4.6	33	74	19	123	56	1	1	40	1.15
3855326--3855467	18	7.8	17	76	19	119	57	0	0	41	1.09
3855549--3855636	19	4.9	18	68	20	60	46	1	0	52	1.08
3855605--3855670	15	4.5	15	70	24	52	48	1	0	50	1.10
3855615--3855678	26	2.5	26	90	5	96	50	1	0	48	1.10
3855614--3855678	9	7.6	9	69	22	50	49	1	0	49	1.10
3855881--3855932	25	2.1	25	92	0	86	40	3	0	55	1.18
3860803--3860853	15	3.4	14	76	23	50	45	0	11	43	1.40
3860814--3860882	31	2.2	31	84	5	86	47	2	10	39	1.52
3872683--3872743	13	5.1	11	72	18	50	52	1	1	44	1.20
3872679--3872728	6	8.3	6	77	14	50	52	0	0	48	1.00
3872678--3872728	13	4.1	13	80	7	61	50	0	0	49	1.00
3873703--3873741	16	2.3	17	86	8	53	25	2	2	69	1.14
3880343--3880403	33	1.9	30	83	9	77	42	4	8	44	1.55
3881666--3881723	26	2.2	26	90	0	89	22	15	10	51	1.73
3891507--3891568	32	2.0	31	87	9	92	38	1	4	54	1.31
3897557--3897601	19	2.5	19	86	13	60	48	4	2	44	1.35
3897940--3898010	26	2.7	27	77	14	67	57	1	0	40	1.07
3905158--3905333	91	1.9	91	94	0	307	35	13	22	27	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3912207--3912269	26	2.4	25	82	15	67	52	3	0	44	1.17
3920456--3920502	23	2.1	22	88	4	67	46	0	2	51	1.13
3921509--3921751	134	1.8	134	81	1	301	29	21	9	38	1.86
3932152--3932213	23	2.8	22	76	7	63	51	3	0	45	1.17
3939186--3939253	16	4.2	16	81	10	84	48	7	2	41	1.46
3940039--3940074	12	3.0	12	91	0	54	41	0	8	50	1.33
3940271--3940354	45	1.9	42	85	7	114	47	3	2	46	1.32
3941176--3941207	2	15.5	2	93	6	55	46	0	3	50	1.17
3944567--3944623	30	1.9	29	86	10	80	33	0	0	66	0.92
3944581--3944620	18	2.2	19	86	13	57	32	0	0	67	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129