genome.fa.s13.2.7.7.80.10.50.1000.59.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  59  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11495935--11496317	88	4.4	87	87	3	531	48	12	6	32	1.66
11495954--11496294	174	2.0	174	91	1	558	48	12	7	32	1.68
11497999--11498026	2	14.0	2	100	0	56	50	0	0	50	1.00
11500884--11500962	39	2.0	39	97	0	149	44	16	12	26	1.83
11502661--11502703	20	2.1	21	86	4	61	67	2	0	30	1.03
11502669--11502708	18	2.2	18	86	8	55	77	2	0	20	0.88
11504661--11504742	37	2.2	37	86	4	112	20	21	31	25	1.98
11511711--11511799	43	2.1	43	86	0	124	42	15	14	26	1.86
11515357--11515529	93	1.9	93	90	2	276	46	8	6	38	1.62
11515343--11515540	93	2.1	93	85	3	274	45	9	7	37	1.63
11518682--11518726	21	2.1	21	83	0	54	40	20	15	24	1.91
11520857--11520893	13	2.8	13	87	0	56	16	13	0	70	1.17
11523742--11523999	41	6.3	41	84	3	331	44	17	15	22	1.86
11524232--11524307	20	3.6	21	71	5	64	36	19	10	32	1.86
11524446--11524524	21	3.8	21	87	0	104	35	16	7	40	1.77
11524608--11524648	20	2.0	20	100	0	82	29	14	14	41	1.86
11524610--11524659	20	2.5	20	90	6	75	36	16	12	36	1.85
11525859--11525951	8	10.9	8	80	13	87	7	9	0	82	0.83
11530008--11530129	60	2.1	59	90	1	190	22	14	6	55	1.62
11530070--11530221	47	3.1	48	88	5	218	26	12	7	53	1.64
11530620--11530644	13	1.9	13	100	0	50	12	0	0	88	0.53
11531499--11531545	16	2.9	16	87	6	67	85	2	0	12	0.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11531500--11531542	22	2.0	22	90	0	68	83	2	0	13	0.74
11537461--11537519	22	2.7	22	86	5	75	37	8	20	33	1.83
11537701--11537784	42	2.0	42	86	4	116	38	10	15	35	1.82
11538075--11538385	41	7.6	41	76	7	209	25	14	19	40	1.89
11538288--11538451	41	4.0	41	86	0	220	28	16	17	37	1.92
11538412--11538677	106	2.5	106	89	6	405	39	12	15	33	1.84
11538412--11538677	107	2.5	109	90	5	418	39	12	15	33	1.84
11540754--11540796	11	3.9	11	81	9	52	9	0	4	86	0.71
11540888--11541292	58	6.9	58	88	2	580	43	7	12	36	1.70
11540908--11541291	115	3.3	115	91	2	626	43	7	12	37	1.70
11544215--11544245	15	2.1	15	93	0	53	77	3	0	19	0.90
11546416--11546449	17	2.0	17	88	11	52	14	14	0	70	1.17
11546610--11546948	42	8.1	41	80	7	284	42	17	14	25	1.87
11546653--11546948	125	2.4	125	86	4	391	43	16	13	26	1.85
11546653--11546949	83	3.6	82	85	3	382	43	16	13	26	1.85
11547313--11547356	21	2.1	21	88	12	65	47	18	4	29	1.68
11548335--11548388	26	2.1	26	86	6	74	5	11	3	79	1.02
11551004--11551042	21	1.9	21	89	5	62	20	33	28	17	1.96
11551085--11551114	13	2.2	14	94	5	53	0	16	0	83	0.65
11551165--11551201	4	9.2	4	87	0	56	24	0	5	70	1.08
11551170--11551206	12	3.1	12	88	0	56	24	0	5	70	1.08
11551656--11551712	25	2.3	24	76	8	60	40	5	19	35	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11552205--11552257	22	2.5	21	81	6	63	11	1	5	81	0.94
11552324--11552358	10	3.5	10	85	14	54	22	0	0	77	0.78
11552325--11552364	20	2.0	21	95	5	73	22	2	0	75	0.93
11552392--11552669	59	4.7	58	87	6	389	45	7	13	33	1.71
11556546--11556600	7	7.9	7	78	9	51	80	0	16	3	0.86
11557807--11557920	40	2.8	42	86	5	155	23	18	21	36	1.95
11557931--11557996	25	2.6	25	85	7	89	84	9	0	6	0.76
11557950--11557988	20	1.9	21	89	5	62	87	12	0	0	0.55
11557931--11557995	14	4.4	14	75	16	60	86	9	0	4	0.71
11557931--11557995	17	3.8	17	82	10	78	86	9	0	4	0.71
11557931--11557987	8	6.8	8	86	9	78	85	10	0	3	0.70
11558089--11558129	20	2.0	21	90	4	66	26	34	24	14	1.94
11558170--11558199	13	2.2	14	94	5	53	0	16	0	83	0.65
11559272--11559327	8	6.9	8	80	10	51	14	0	8	76	1.00
11559269--11559407	20	6.8	20	72	21	78	16	2	5	75	1.10
11559267--11559309	11	4.1	11	77	22	56	9	0	9	81	0.88
11559267--11559328	31	1.9	33	87	6	92	14	0	9	75	1.03
11559334--11559373	17	2.3	18	82	8	55	12	7	5	75	1.18
11559377--11559416	20	2.0	21	95	5	73	22	2	0	75	0.93
11559444--11559721	59	4.7	58	86	6	380	46	7	12	33	1.70
11565937--11566074	54	2.6	54	77	1	152	26	15	8	49	1.73
11565976--11566083	54	2.0	54	87	0	153	22	11	8	58	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11566639--11566706	25	2.8	23	75	18	59	69	10	2	17	1.30
11567496--11567660	62	2.7	61	71	7	152	33	13	12	40	1.81
11567875--11568520	63	10.2	62	71	13	354	39	10	14	35	1.81
11570173--11570202	8	3.6	8	95	4	51	23	0	3	73	0.98
11575385--11575627	123	2.0	122	97	0	459	34	24	10	30	1.89
11575603--11575746	66	2.2	66	89	1	225	21	31	6	40	1.80
11580504--11580742	66	3.8	61	81	10	241	33	10	5	50	1.61
11580504--11580765	125	2.1	125	82	6	309	34	9	6	50	1.60
11580804--11580855	12	4.2	12	80	9	52	71	0	0	28	0.87
11582022--11582153	45	3.0	45	84	2	160	49	20	7	22	1.74
11582337--11582398	21	2.9	21	73	2	61	37	17	8	37	1.80
11582601--11582898	25	12.6	25	74	12	261	37	12	10	39	1.77
11582672--11582925	46	5.4	46	85	5	330	38	12	10	38	1.78
11582601--11582898	71	4.2	70	78	8	280	37	12	10	39	1.77
11582599--11582852	117	2.1	118	85	4	341	37	11	9	40	1.74
11582672--11582925	96	2.7	92	83	5	330	38	12	10	38	1.78
11582657--11582925	142	1.9	142	88	0	412	37	12	10	39	1.78
11584208--11584269	1	62.0	1	80	0	61	1	9	0	88	0.58
11584201--11584270	10	7.7	9	80	9	72	2	11	0	85	0.69
11584201--11584266	19	3.5	19	82	14	66	3	10	0	86	0.68
11584209--11584270	22	2.8	22	85	7	81	1	11	0	87	0.62
11588184--11588307	66	1.9	65	91	1	203	33	8	6	52	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11588370--11588404	3	11.7	3	87	0	52	65	2	0	31	1.07
11588356--11588416	18	3.5	17	73	22	56	65	3	1	29	1.18
11589303--11589356	4	15.0	4	88	11	50	72	1	0	25	0.95
11593674--11593733	19	3.0	20	75	20	63	75	3	6	15	1.15
11594610--11594677	30	2.3	29	82	12	84	35	5	2	55	1.39
11595508--11595623	11	9.8	11	72	24	78	18	3	2	75	1.07
11600281--11600311	11	2.9	11	95	4	55	83	0	9	6	0.79
11600281--11600332	11	4.9	10	80	17	52	82	0	11	5	0.82
11601127--11601573	240	1.9	240	81	3	542	20	20	11	47	1.81
11602011--11602068	5	11.6	5	81	7	55	36	1	6	55	1.37
11602463--11602504	20	2.1	20	90	0	66	23	11	21	42	1.86
11602960--11602999	17	2.5	16	88	8	55	17	2	5	75	1.10
11605046--11605093	13	3.7	13	82	0	60	70	2	4	22	1.15
11606368--11606418	21	2.4	21	75	21	52	43	3	9	43	1.56
11606758--11606794	11	3.5	11	78	14	51	29	0	0	70	0.88
11606803--11606854	19	2.7	20	82	17	65	48	0	0	51	1.00
11606803--11606854	20	2.7	19	80	19	63	48	0	0	51	1.00
11609764--11609803	20	2.0	21	85	5	55	50	0	0	50	1.00
11617557--11617584	2	14.0	2	100	0	56	50	0	0	50	1.00
11619202--11619236	2	17.5	2	100	0	70	51	0	0	48	1.00
11620251--11620277	2	13.5	2	100	0	54	51	0	0	48	1.00
11634005--11634047	11	3.8	11	81	6	59	27	4	2	65	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11633992--11634042	23	2.2	24	92	3	86	25	7	5	60	1.47
11634863--11634918	27	2.1	27	82	0	67	32	8	26	32	1.87
11635930--11636011	24	3.4	24	75	6	76	54	2	8	34	1.44
11635930--11636065	48	2.8	48	78	2	121	49	2	11	36	1.53
11635995--11636065	24	3.0	25	81	8	94	43	2	14	39	1.59
11639038--11639243	72	2.8	73	82	2	279	45	8	9	37	1.66
11639690--11639824	72	1.9	72	85	0	189	38	11	13	37	1.80
11644426--11644450	12	2.1	12	100	0	50	24	8	24	44	1.80
11653285--11653322	2	19.0	2	94	0	67	50	0	2	47	1.15
11655016--11655040	6	4.2	6	100	0	50	16	0	0	84	0.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129