genome.fa.s13.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  41  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8316116--8316159	19	2.3	19	88	11	63	65	2	0	31	1.05
8316239--8316269	5	6.2	5	92	0	53	58	3	0	38	1.15
8332717--8332747	8	3.9	8	91	0	53	0	12	0	87	0.55
8332783--8332848	8	8.0	8	77	12	55	80	3	1	15	0.91
8333293--8333330	19	1.9	19	89	5	58	39	23	7	28	1.83
8333642--8333731	6	15.2	6	91	2	65	72	1	2	24	1.03
8333655--8333766	3	37.3	3	89	3	145	64	0	5	30	1.16
8335505--8335594	31	2.9	32	78	6	105	38	5	4	51	1.46
8335605--8335655	19	2.6	20	75	12	61	47	0	0	52	1.00
8335706--8335782	28	2.7	27	78	13	93	44	3	0	51	1.19
8336414--8336497	31	2.7	31	83	0	105	39	5	11	42	1.66
8336809--8336847	20	2.0	20	90	10	62	53	0	0	46	1.00
8336886--8336910	7	3.6	7	100	0	50	56	0	0	44	0.99
8343399--8343423	2	12.5	2	100	0	50	48	0	52	0	1.00
8345666--8345707	15	2.6	16	81	11	50	52	0	2	45	1.13
8346089--8346141	20	2.5	20	78	6	52	50	1	1	45	1.23
8347170--8347245	30	2.5	31	78	4	84	43	11	2	42	1.55
8347291--8347350	28	2.1	28	82	11	70	50	1	13	35	1.52
8347946--8347985	17	2.4	17	86	0	53	37	12	5	45	1.64
8347992--8348033	17	2.4	18	84	11	52	26	4	2	66	1.23
8349533--8349569	17	2.2	17	95	0	65	40	13	13	32	1.84
8354262--8354310	9	5.3	9	90	4	71	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8354264--8354304	19	2.2	19	95	0	73	36	0	0	63	0.95
8360698--8360749	18	2.9	18	72	13	54	55	1	0	42	1.10
8360740--8360798	6	10.0	6	80	10	68	64	0	0	35	0.94
8360742--8360797	16	3.3	17	83	11	71	64	0	0	35	0.94
8360734--8360797	22	2.9	22	81	9	76	65	0	0	34	0.93
8362691--8362734	23	2.0	23	86	4	63	68	4	11	15	1.36
8363608--8364786	404	2.9	402	87	3	1579	36	9	14	38	1.79
8367134--8367159	1	26.0	1	100	0	52	0	0	0	100	0.00
8368143--8368208	27	2.4	26	82	7	69	30	1	1	66	1.10
8372063--8372088	13	2.0	13	100	0	52	61	15	15	7	1.55
8372990--8373069	12	7.7	12	70	30	60	51	0	0	48	1.00
8373024--8373087	31	2.1	31	85	5	85	42	1	3	53	1.26
8374500--8374550	23	2.1	24	85	10	68	45	0	0	54	0.99
8374532--8374598	19	3.3	20	77	10	57	37	1	0	61	1.05
8374816--8374876	31	2.2	26	85	14	77	42	13	14	29	1.84
8376186--8376211	7	3.7	7	100	0	52	42	15	26	15	1.87
8376387--8376412	6	4.3	6	100	0	52	0	15	84	0	0.62
8380057--8380136	23	3.2	23	70	23	72	40	0	2	57	1.12
8380009--8380119	30	3.9	30	78	12	110	39	1	1	56	1.20
8380085--8380140	23	2.4	23	90	0	85	41	0	3	55	1.17
8382215--8382276	10	6.9	10	74	20	57	54	0	0	45	0.99
8382907--8382961	17	3.4	17	77	5	51	58	1	1	38	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8383353--8383383	13	2.4	13	94	0	53	90	9	0	0	0.46
8385948--8385987	15	2.4	17	84	16	57	72	2	15	10	1.21
8385937--8385983	24	1.9	25	91	4	78	72	4	12	10	1.25
8386241--8386291	23	2.2	22	83	13	59	66	1	0	31	1.03
8386253--8386299	22	2.2	22	85	11	62	68	0	0	31	0.90
8386245--8386299	21	2.6	21	83	13	60	67	1	0	30	1.01
8387835--8387890	11	5.3	11	79	12	55	82	12	3	1	0.88
8388478--8388510	15	2.1	16	88	11	50	57	3	0	39	1.14
8397724--8397786	18	3.6	18	73	16	69	7	3	9	79	1.04
8397724--8397801	34	2.3	33	93	4	138	7	3	8	79	1.04
8397755--8397808	24	2.4	22	84	6	63	7	3	7	81	0.97
8401463--8401510	8	5.9	8	82	4	60	39	22	2	35	1.66
8409278--8409308	15	2.0	16	93	6	55	12	12	3	70	1.27
8409747--8409808	13	4.5	13	78	9	61	30	20	9	38	1.85
8409747--8409884	28	4.9	28	80	6	163	33	18	10	36	1.86
8410406--8410639	44	5.3	44	81	0	254	26	10	17	45	1.81
8410406--8410639	88	2.7	88	82	0	290	26	10	17	45	1.81
8410406--8410657	132	1.9	131	83	5	321	27	10	17	44	1.81
8410406--8410673	44	6.1	44	76	6	238	27	9	17	44	1.80
8410406--8410673	88	3.0	87	77	4	270	27	9	17	44	1.80
8411084--8411117	12	2.8	12	90	0	50	52	8	20	17	1.71
8414767--8414857	44	2.2	44	80	11	102	40	1	0	58	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8419409--8419442	16	2.1	17	88	5	52	52	11	5	29	1.61
8419615--8419660	19	2.4	19	77	19	51	71	4	17	6	1.24
8425348--8425448	42	2.4	42	80	11	116	44	0	2	51	1.23
8425406--8425470	29	2.3	27	86	7	85	46	0	1	52	1.10
8425424--8425488	24	2.7	24	76	11	69	50	1	1	46	1.20
8425551--8425587	20	2.0	20	89	10	60	56	0	0	43	0.99
8425929--8425966	18	2.1	19	85	5	51	36	0	5	57	1.21
8427512--8427569	10	6.1	10	68	11	50	50	0	0	50	1.00
8430951--8430986	5	7.0	5	87	6	54	16	2	0	80	0.83
8440853--8440895	13	3.2	13	81	18	52	23	0	4	72	1.04
8440882--8440915	17	2.0	17	88	11	52	17	2	8	70	1.25
8441997--8442045	18	2.9	16	77	11	53	18	2	8	71	1.21
8444437--8444479	19	2.3	19	79	0	50	37	16	9	37	1.81
8444642--8444679	18	2.1	18	90	5	58	47	0	0	52	1.00
8444992--8445027	18	2.0	18	88	0	54	22	0	0	77	0.76
8446084--8446122	19	2.1	19	85	0	51	20	15	46	17	1.84
8447364--8447398	18	1.9	18	94	0	61	51	14	5	28	1.65
8451309--8451361	16	3.2	17	86	5	56	22	11	22	43	1.85
8451319--8451361	16	2.7	16	92	0	68	23	9	25	41	1.84
8454744--8454768	2	12.5	2	100	0	50	52	0	48	0	1.00
8455366--8455427	26	2.4	26	97	0	115	58	0	3	38	1.15
8455459--8455498	20	2.0	20	85	9	55	40	2	5	52	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8455565--8455632	24	2.8	23	80	6	64	50	7	0	42	1.30
8455586--8455632	24	1.9	25	87	12	71	55	6	0	38	1.26
8455644--8455681	16	2.2	18	86	9	53	63	5	0	31	1.17
8459537--8459566	9	3.3	9	90	0	51	93	0	6	0	0.35
8461275--8461311	17	2.2	17	90	0	56	40	0	8	51	1.32
8461441--8461471	2	15.5	2	100	0	62	51	0	0	48	1.00
8464550--8464575	3	8.7	3	100	0	52	0	34	0	65	0.93
8474526--8474581	25	2.2	25	81	12	69	48	8	0	42	1.34
8474528--8474581	26	2.1	26	86	6	74	48	9	0	42	1.35
8474243--8474628	206	1.9	203	83	10	504	36	8	6	48	1.58
8474695--8474733	20	1.9	21	89	5	62	79	5	0	15	0.90
8475146--8475217	31	2.3	31	80	2	90	44	15	12	27	1.82
8475203--8475251	21	2.5	18	87	12	62	44	8	2	44	1.45
8475822--8476028	84	2.5	83	85	6	276	42	21	11	24	1.85
8475822--8476028	42	5.0	41	83	4	245	42	21	11	24	1.85
8476188--8476232	23	1.9	24	86	4	65	35	20	13	31	1.91
8476441--8476500	20	2.9	21	80	5	59	31	20	13	35	1.91
8476462--8476655	58	3.3	58	87	1	289	30	18	13	37	1.89
8476637--8476694	21	2.7	22	83	2	82	36	20	8	34	1.84
8480810--8480959	73	2.1	73	92	1	248	41	8	22	28	1.83
8482762--8482806	23	2.0	23	86	0	63	71	6	0	22	1.09
8484045--8484305	130	2.0	131	96	0	479	38	17	16	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8487542--8487574	17	1.9	17	100	0	66	27	30	12	30	1.92
8487546--8487583	17	2.2	17	90	0	58	28	34	13	23	1.92
8492119--8492155	2	18.5	2	100	0	74	0	48	0	51	1.00
8495103--8495277	87	2.0	87	95	0	314	28	16	17	37	1.92
8498775--8498954	74	2.4	75	85	4	247	33	20	21	25	1.97
8507333--8507511	74	2.4	74	87	6	256	34	22	18	25	1.96
8508520--8508553	16	2.1	16	88	0	50	41	2	8	47	1.50
8511123--8511148	11	2.4	11	100	0	52	50	0	0	50	1.00
8511439--8511496	16	3.5	17	77	13	50	75	5	0	18	0.98
8511451--8511516	14	4.6	14	75	9	62	77	4	1	16	1.01

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129