genome.fa.s13.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  121  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21927314--21927353	17	2.4	17	87	4	55	32	0	2	65	1.06
21927386--21927448	29	2.2	30	86	11	87	57	1	0	41	1.08
21927396--21927453	27	2.2	26	84	12	73	56	1	0	41	1.09
21927822--21927849	2	14.0	2	100	0	56	0	50	0	50	1.00
21930510--21930568	30	2.0	30	82	0	73	49	0	1	49	1.11
21930637--21930675	15	2.7	15	84	4	53	38	0	0	61	0.96
21935222--21935260	19	2.1	19	85	4	53	30	0	0	69	0.89
21937807--21937840	16	2.1	16	100	0	68	41	0	0	58	0.98
21941606--21941639	13	2.5	14	85	4	52	55	0	2	41	1.15
21942377--21942417	21	2.0	20	85	4	55	53	0	0	46	1.00
21943102--21943141	12	3.2	12	82	6	53	30	0	0	70	0.88
21950986--21951048	32	2.0	32	100	0	126	20	6	9	63	1.46
21962240--21962329	42	2.1	42	81	4	110	36	10	12	41	1.76
21975179--21975222	16	2.5	17	85	10	54	50	0	0	50	1.00
21975212--21975263	11	4.7	12	79	15	51	69	0	0	30	0.89
21975211--21975268	20	3.0	19	74	25	59	68	0	0	31	0.89
21975225--21975257	16	1.9	18	88	11	52	69	0	0	30	0.88
21975212--21975275	32	2.0	32	81	6	76	68	1	0	29	0.99
21980708--21980757	22	2.2	23	85	3	66	40	0	0	60	0.97
21980705--21980758	15	3.5	15	80	10	56	40	0	0	59	0.98
21980772--21980810	19	2.0	20	85	5	53	38	7	7	46	1.61
21981896--21981994	18	5.4	18	70	18	53	63	0	2	34	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21981985--21982046	25	2.5	25	81	7	81	48	0	0	51	1.00
21983620--21983685	34	2.0	33	87	3	96	40	7	7	43	1.61
21984931--21984966	2	18.0	2	100	0	72	0	50	0	50	1.00
21984969--21985034	14	4.9	13	69	12	53	37	6	1	54	1.34
21985057--21985220	79	2.1	80	89	3	260	46	4	0	48	1.26
21985164--21985236	32	2.2	34	79	13	82	42	1	1	54	1.17
21990175--21990214	18	2.3	17	87	8	62	52	0	0	47	1.00
21994898--21994985	30	2.9	30	86	6	106	46	0	0	53	1.00
21995475--21995508	13	2.5	14	85	9	52	41	0	0	58	0.98
21995618--21995673	28	2.0	27	83	10	69	58	5	1	33	1.31
22000166--22000225	16	3.9	16	73	6	52	41	0	1	56	1.09
22000742--22000875	15	8.8	16	68	21	56	52	3	0	43	1.24
22000740--22000926	31	6.0	31	73	14	170	54	2	0	42	1.18
22000764--22000894	23	5.3	23	70	16	59	52	3	0	43	1.19
22000966--22000998	15	2.3	15	89	5	50	51	0	0	48	1.00
22001168--22001200	14	2.4	14	100	0	66	33	12	0	54	1.37
22001705--22001734	12	2.5	12	94	0	51	30	26	0	43	1.55
22021782--22021806	13	1.9	13	100	0	50	76	0	0	24	0.80
22023232--22023294	2	30.5	2	80	6	72	49	4	3	42	1.39
22026829--22026860	7	4.6	7	92	0	55	0	12	40	46	1.42
22035915--22035941	2	13.5	2	100	0	54	51	0	0	48	1.00
22037764--22037797	16	2.2	16	89	5	52	14	11	14	58	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22039270--22039311	21	2.0	22	85	4	59	40	2	0	57	1.12
22039269--22039319	21	2.3	21	80	6	57	43	1	0	54	1.11
22042855--22042881	12	2.2	12	100	0	54	59	0	33	7	1.25
22043556--22043597	17	2.3	19	84	12	61	47	0	0	52	1.00
22044873--22044940	20	3.3	20	78	17	70	67	0	0	32	0.91
22050979--22051003	12	2.1	12	100	0	50	48	16	0	36	1.46
22051452--22051494	11	4.2	11	82	11	56	37	0	0	62	0.95
22051449--22051515	9	7.3	9	75	18	59	40	0	1	58	1.07
22056442--22056466	13	1.9	13	100	0	50	28	0	0	72	0.86
22059477--22059528	12	4.7	12	71	23	51	46	1	0	51	1.12
22061525--22061578	26	2.0	29	82	10	69	48	0	1	50	1.11
22064318--22064356	13	2.9	13	85	14	53	74	0	0	25	0.82
22071940--22071981	12	3.4	12	75	18	50	42	23	7	26	1.80
22071976--22072022	12	3.9	12	80	8	60	36	23	14	25	1.93
22072854--22074198	187	7.2	187	77	6	1147	40	10	11	36	1.77
22072877--22074198	374	3.5	369	81	5	1444	40	10	12	36	1.77
22073098--22073570	62	7.6	63	66	15	185	40	11	12	36	1.78
22072902--22074198	373	3.5	368	81	5	1441	40	10	12	36	1.77
22079291--22079324	15	2.3	15	100	0	68	32	26	14	26	1.95
22079291--22079332	15	2.8	15	92	0	57	30	28	11	28	1.92
22086353--22086384	2	16.0	2	100	0	64	50	0	0	50	1.00
22086916--22087002	25	3.8	25	73	13	71	29	5	2	62	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22086916--22086962	24	2.0	24	87	8	69	29	6	0	63	1.19
22087437--22087481	16	2.8	16	90	10	65	68	0	0	31	0.89
22087434--22087503	23	3.0	23	82	4	86	67	0	0	32	0.91
22087505--22087543	20	2.0	20	85	10	53	64	2	0	33	1.08
22087816--22087864	15	3.4	14	75	8	53	44	0	0	55	0.99
22089098--22089224	64	2.0	64	93	1	220	48	11	14	24	1.78
22090343--22090405	12	5.4	12	76	17	53	34	0	1	63	1.04
22090361--22090403	22	2.0	22	90	0	68	34	0	2	62	1.08
22090394--22090435	20	2.2	20	91	4	68	54	2	0	42	1.13
22091931--22091974	19	2.2	20	84	11	56	61	9	6	22	1.50
22092777--22092808	10	3.4	10	83	16	50	31	0	0	68	0.90
22098538--22098578	19	2.3	19	87	8	59	31	0	0	68	0.90
22098538--22098578	20	2.0	20	90	0	64	31	0	0	68	0.90
22098573--22098646	33	2.2	32	79	11	85	48	0	2	48	1.15
22099218--22099272	20	2.9	18	82	15	67	36	0	0	63	0.95
22099514--22099574	21	2.8	22	77	18	65	49	0	0	50	1.00
22099514--22099563	21	2.4	20	87	12	66	48	0	0	52	1.00
22099857--22099886	2	15.0	2	100	0	60	50	0	0	50	1.00
22100403--22100502	8	12.4	8	70	16	55	30	4	2	64	1.23
22100415--22100497	25	3.4	25	75	12	75	30	4	2	62	1.28
22100480--22100520	22	2.0	20	85	9	55	26	2	2	68	1.15
22100814--22100859	5	9.6	5	76	9	51	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22100819--22100865	23	2.0	23	100	0	94	65	0	0	34	0.93
22100805--22100866	23	2.4	27	87	12	87	62	0	0	37	0.95
22100907--22100951	23	2.0	23	86	8	65	60	0	0	40	0.97
22101149--22101194	14	3.2	14	84	6	65	50	2	0	47	1.13
22101150--22101188	20	2.0	20	85	10	53	56	0	0	43	0.99
22102419--22102446	5	5.6	5	100	0	56	64	0	0	35	0.94
22107909--22107970	29	2.1	29	82	5	72	41	8	4	45	1.55
22108723--22108756	16	2.2	16	89	5	52	61	32	0	5	1.20
22108944--22108969	12	2.2	12	100	0	52	84	7	0	7	0.77
22109927--22109964	3	13.0	3	94	5	69	68	0	0	31	0.90
22116615--22116639	7	3.6	7	100	0	50	28	0	12	60	1.32
22117931--22117967	9	4.0	9	89	3	56	27	0	0	72	0.84
22118023--22118051	2	14.5	2	100	0	58	48	0	0	51	1.00
22118629--22118670	18	2.3	19	95	4	77	30	0	0	69	0.89
22118738--22118794	25	2.3	23	78	18	62	57	7	0	35	1.26
22118750--22118806	25	2.3	25	81	3	80	59	7	0	33	1.24
22119189--22119283	30	3.1	30	80	8	95	49	1	1	48	1.15
22120075--22120107	17	2.0	17	88	5	50	21	6	15	57	1.59
22119882--22120212	131	2.5	130	95	0	583	18	10	20	50	1.76
22125499--22125527	14	2.0	15	93	6	51	62	0	10	27	1.28
22125988--22126071	21	4.0	21	81	4	82	35	8	8	47	1.64
22126207--22126250	22	2.0	22	82	8	54	38	9	2	50	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22126379--22126618	22	10.9	22	74	1	158	40	5	6	47	1.53
22126406--22126643	88	2.7	88	80	3	248	41	7	6	44	1.57
22126592--22126643	22	2.4	22	83	0	59	46	7	1	44	1.43
22126570--22126717	74	2.0	74	81	5	174	45	6	2	45	1.41
22126642--22126720	22	3.6	21	85	10	104	44	7	1	46	1.40
22126642--22126714	11	6.6	11	76	6	58	45	6	1	46	1.38
22126679--22126763	22	3.9	22	78	9	84	35	8	3	52	1.48
22126822--22126877	21	2.6	22	80	5	69	39	8	3	48	1.52
22126981--22127018	19	2.0	20	85	15	53	44	7	0	47	1.32
22127039--22127100	22	2.9	21	78	7	63	38	3	4	53	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129