genome.fa.s13.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  56  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10961759--10961891	30	4.5	30	78	7	137	24	0	26	48	1.57
10961780--10961855	14	5.3	14	68	6	53	19	0	28	51	1.47
10961838--10961921	44	1.9	44	85	0	114	27	2	22	47	1.63
10962034--10962105	3	23.3	3	78	16	76	37	1	0	61	1.05
10962681--10962733	26	2.0	26	100	0	106	11	7	30	50	1.65
10963998--10964056	18	3.4	17	81	9	64	10	0	11	77	0.98
10964209--10964254	22	2.1	22	91	0	74	32	10	21	34	1.88
10964373--10964615	84	2.9	83	79	3	265	38	14	11	35	1.83
10965356--10965404	23	2.1	23	84	0	62	42	8	6	42	1.59
10965480--10965551	3	24.3	3	79	8	76	33	2	2	61	1.25
10966318--10966395	13	6.2	12	70	20	52	19	2	2	75	1.03
10966343--10966395	21	2.7	19	85	8	63	18	1	1	77	0.96
10971884--10972448	121	4.7	120	78	3	454	21	24	10	42	1.85
10972485--10972581	37	2.6	37	83	4	115	19	16	13	50	1.78
10972759--10972799	12	3.4	12	89	0	55	24	2	7	65	1.30
10972802--10972923	23	5.6	23	78	13	116	38	0	12	48	1.47
10972807--10972864	5	12.0	5	90	7	93	39	0	17	43	1.49
10972769--10972925	23	7.2	23	75	15	111	36	1	10	51	1.45
10972804--10972914	10	10.6	10	77	12	80	37	0	12	48	1.47
10972983--10973013	3	10.3	3	100	0	62	32	32	0	35	1.58
10973609--10973681	13	5.2	13	75	15	65	17	2	5	73	1.14
10983308--10983377	28	2.5	28	100	0	140	18	2	31	47	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10983290--10983375	14	6.1	14	72	0	73	18	3	27	50	1.63
10983347--10983456	57	1.9	58	84	1	150	20	4	29	45	1.71
10983355--10983506	58	2.6	57	80	5	162	25	2	26	45	1.67
10983619--10983718	3	33.3	3	77	15	64	38	3	0	59	1.13
10984606--10984653	25	2.0	24	84	12	62	8	2	10	79	1.02
10985008--10985074	24	2.8	24	81	0	80	14	11	37	35	1.84
10985953--10986002	20	2.5	20	73	0	55	48	0	4	48	1.20
10988681--10988711	6	5.2	6	96	0	53	38	12	0	48	1.42
10988746--10988789	6	7.0	6	85	10	61	50	0	13	36	1.42
10988742--10988789	14	3.4	14	82	0	60	50	0	14	35	1.44
10988702--10988942	67	3.8	65	86	11	363	40	10	9	40	1.71
10988735--10988786	8	6.5	8	79	0	50	51	0	11	36	1.38
10988802--10988836	18	1.9	18	94	0	61	48	2	5	42	1.41
10988803--10988843	18	2.3	18	86	0	55	51	2	7	39	1.43
10988690--10988953	124	2.1	124	97	0	492	39	10	8	41	1.70
10988870--10988913	6	7.0	6	85	10	61	50	0	13	36	1.42
10988866--10988913	14	3.4	14	82	0	60	50	0	14	35	1.44
10988859--10988910	8	6.5	8	79	0	50	51	0	11	36	1.38
10989252--10989295	23	1.9	24	86	9	65	38	15	34	11	1.84
10990430--10990462	7	4.6	7	96	3	57	84	0	0	15	0.61
10990430--10990475	14	3.1	15	87	12	60	80	2	2	15	0.91
10991147--10991211	29	2.1	29	83	11	76	50	7	3	38	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10991355--10991385	2	16.0	2	93	6	55	51	0	0	48	1.00
11002805--11003288	144	3.4	142	73	8	377	32	14	11	40	1.83
11003766--11003799	15	2.3	15	89	0	50	76	2	17	2	1.04
11010971--11011010	21	2.0	21	95	5	73	50	17	0	32	1.47
11019606--11019661	15	3.5	15	71	23	51	33	0	0	66	0.92
11019707--11019739	10	3.3	10	84	16	50	69	0	0	30	0.88
11022714--11022743	8	3.8	8	95	0	51	16	10	46	26	1.78
11024021--11024058	2	19.0	2	100	0	76	50	0	50	0	1.00
11028310--11028407	39	2.5	39	78	6	117	53	7	1	38	1.35
11028386--11028421	19	1.9	19	88	5	56	50	5	0	44	1.25
11028472--11028513	21	2.0	21	90	0	66	52	2	4	40	1.35
11028430--11028497	30	2.3	28	75	7	73	61	0	5	32	1.20
11028472--11028537	21	3.2	21	76	4	62	56	4	3	36	1.35
11028516--11028586	10	7.2	10	73	9	56	60	8	0	30	1.26
11028516--11028591	29	2.6	30	81	8	93	56	7	0	35	1.28
11029159--11029249	10	9.6	9	74	11	65	34	3	2	60	1.25
11029137--11029201	20	3.3	20	79	14	64	30	1	7	60	1.34
11029215--11029323	38	2.9	35	73	14	94	40	0	4	55	1.21
11029239--11029305	18	3.6	17	72	16	62	38	0	4	56	1.19
11036879--11036953	24	3.0	24	87	11	114	30	13	36	20	1.91
11036883--11036949	27	2.6	27	90	6	104	31	13	37	17	1.89
11037548--11037613	22	3.2	22	67	20	70	54	1	24	19	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11037536--11037613	39	2.0	39	97	0	147	52	2	26	17	1.58
11044138--11044186	19	2.6	19	87	6	73	42	0	0	57	0.99
11044161--11044185	11	2.3	11	100	0	50	44	0	0	56	0.99
11045180--11045252	9	7.8	9	73	19	51	28	1	4	65	1.19
11045180--11045253	10	7.9	9	72	19	53	28	1	4	66	1.18
11045181--11045254	18	3.9	18	73	16	69	28	1	4	66	1.18
11045905--11045947	23	1.9	22	85	4	59	65	0	0	34	0.93
11045905--11045947	11	3.8	11	87	6	59	65	0	0	34	0.93
11046291--11046348	22	2.6	21	81	10	53	58	0	0	41	0.98
11046294--11046349	27	2.0	29	86	13	82	57	0	0	42	0.99
11049654--11049739	29	3.0	29	77	15	99	34	2	1	61	1.16
11058907--11058949	11	3.9	11	87	0	68	23	0	25	51	1.49
11058906--11058952	22	2.1	22	96	0	85	27	0	25	46	1.53
11058973--11059129	52	3.0	52	81	5	183	40	8	26	25	1.83
11063935--11063969	18	1.9	18	88	11	54	28	2	0	68	1.04
11065227--11065269	19	2.3	19	83	0	50	37	9	4	48	1.56
11065270--11065319	17	3.0	17	71	11	50	46	0	2	52	1.12
11065407--11065467	24	2.5	24	81	5	68	32	3	3	60	1.29
11068873--11068968	50	1.9	50	91	0	156	53	18	6	21	1.67
11072628--11072679	27	1.9	27	84	0	68	36	26	15	21	1.93
11073026--11073077	22	2.4	22	90	0	86	23	25	21	30	1.99
11074358--11074398	16	2.5	17	84	7	50	75	2	0	21	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11074363--11074405	22	1.9	23	85	4	61	74	4	2	18	1.10
11077687--11077722	2	18.0	2	100	0	72	50	50	0	0	1.00
11079378--11079412	16	2.1	18	89	10	56	0	20	2	77	0.90
11094916--11094947	5	6.4	5	92	0	55	21	0	59	18	1.38
11098025--11098067	19	2.4	17	85	14	52	23	4	4	67	1.28
11098286--11098318	13	2.4	14	90	10	59	45	0	0	54	0.99
11099089--11099188	51	2.0	51	95	0	182	46	18	5	31	1.70
11104737--11104797	30	1.9	32	87	9	90	14	24	8	52	1.69
11111239--11111321	24	3.5	24	75	11	82	40	1	4	53	1.30
11111363--11111409	20	2.3	21	85	3	60	51	17	2	29	1.57
11111853--11111903	22	2.3	22	93	6	86	47	0	0	52	1.00
11111886--11111939	20	2.7	21	77	8	58	40	0	3	55	1.17
11111949--11112057	53	2.0	52	81	8	121	43	2	1	52	1.26
11112028--11112060	10	3.3	10	91	8	50	45	0	0	54	0.99
11112028--11112063	18	1.9	18	88	5	54	41	0	0	58	0.98
11112180--11112226	21	2.2	21	88	0	67	42	2	0	55	1.12
11112189--11112223	18	2.0	17	88	5	52	40	0	0	60	0.97
11112188--11112228	21	2.0	21	95	0	73	41	0	0	58	0.98
11118046--11118070	7	3.6	7	100	0	50	88	0	0	12	0.53
11120183--11120240	29	2.0	29	96	0	107	27	18	17	36	1.94
11122743--11122855	56	2.0	56	96	0	208	44	15	18	22	1.86
11128138--11128169	14	2.4	13	90	10	55	90	3	0	6	0.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11128256--11128294	16	2.3	18	86	8	55	69	12	7	10	1.37
11129912--11129973	23	2.7	23	90	2	90	37	24	16	22	1.94
11129692--11130069	203	1.9	203	95	0	684	33	17	16	31	1.93
11130328--11130586	33	8.3	30	71	17	118	34	23	11	30	1.91
11130353--11130484	28	4.4	29	72	16	99	34	25	9	30	1.88
11130353--11130484	62	2.2	59	85	9	169	34	25	9	30	1.88
11130305--11130679	187	2.0	186	84	3	486	33	22	12	31	1.91
11130667--11130719	27	2.0	27	84	0	70	35	15	13	35	1.86
11130816--11130889	32	2.3	32	80	2	94	31	14	14	39	1.87
11130956--11131098	36	3.9	37	76	5	121	16	13	16	53	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129