genome.fa.s13.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  49  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9766801--9767032	117	2.0	117	93	0	401	41	12	13	32	1.82
9774175--9774238	34	1.9	34	87	6	96	21	10	14	53	1.71
9774576--9774608	16	2.1	16	94	0	57	57	0	0	42	0.98
9776220--9776252	15	2.1	16	88	5	50	36	6	15	42	1.71
9776964--9777016	27	1.9	27	84	3	70	50	0	1	47	1.12
9777728--9777769	19	2.2	20	86	4	59	28	2	4	64	1.26
9779200--9779236	10	3.7	10	85	0	56	64	0	24	10	1.25
9780491--9780533	20	2.1	20	82	4	50	6	20	6	65	1.41
9781206--9781250	20	2.2	21	88	4	65	22	17	24	35	1.95
9781649--9781915	116	2.3	116	79	4	281	40	16	14	27	1.88
9782107--9782326	116	1.9	116	81	1	262	39	15	16	29	1.89
9782453--9782634	43	4.1	43	76	10	161	35	15	15	33	1.89
9782624--9782764	64	2.2	64	79	2	158	44	19	8	27	1.79
9784359--9784383	5	5.0	5	100	0	50	20	0	0	80	0.72
9784973--9785024	12	4.5	11	77	17	52	1	1	11	84	0.78
9784963--9785025	8	7.8	8	78	8	65	1	3	12	82	0.86
9793239--9793280	19	2.3	19	88	8	61	66	7	2	23	1.28
9794193--9794332	69	2.0	69	95	0	253	46	8	17	27	1.77
9795054--9795087	16	2.2	16	89	5	52	5	5	2	85	0.83
9795522--9795783	145	1.8	145	81	5	332	41	11	13	32	1.81
9803112--9803158	17	2.8	17	81	15	62	57	0	36	6	1.24
9804913--9804966	2	29.0	2	75	20	55	48	0	1	50	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9805946--9805976	10	3.2	10	90	9	55	74	0	0	25	0.82
9806928--9806977	13	3.4	15	70	25	52	56	10	12	22	1.65
9806928--9806981	17	3.5	17	69	23	55	55	11	11	22	1.66
9807387--9807446	27	2.2	27	85	5	77	16	1	23	58	1.47
9808501--9808586	45	1.9	45	87	0	127	33	6	18	40	1.78
9809240--9809282	19	2.3	19	91	0	68	41	0	13	44	1.44
9809518--9809677	3	49.7	3	70	18	74	30	4	0	65	1.12
9809540--9809604	28	2.3	29	79	10	73	35	6	0	58	1.23
9809600--9809678	29	2.8	28	86	5	115	25	2	0	72	0.98
9809937--9809978	22	1.9	22	85	9	59	9	4	14	71	1.28
9810359--9810392	11	3.1	11	91	0	50	14	32	32	20	1.93
9810484--9810536	25	2.1	25	82	6	63	32	1	3	62	1.24
9810543--9810585	16	2.6	17	92	3	70	16	0	0	83	0.64
9810543--9810585	22	1.9	23	95	4	79	16	0	0	83	0.64
9810543--9810585	6	7.7	6	85	15	65	16	0	0	83	0.64
9810603--9810820	58	3.7	57	87	4	292	44	5	12	37	1.65
9821288--9821376	24	3.7	24	75	14	78	74	0	17	7	1.05
9821309--9821358	10	5.0	10	88	9	59	80	0	14	6	0.90
9821290--9821359	15	4.6	16	78	10	67	77	0	17	5	0.96
9821294--9821357	5	12.8	5	75	18	53	78	0	15	6	0.95
9822374--9822475	43	2.4	44	86	3	145	25	14	18	41	1.89
9822545--9822634	43	2.1	43	81	4	101	25	21	17	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9822576--9822778	43	4.8	43	78	4	182	26	17	20	35	1.94
9823065--9823139	3	23.3	3	78	17	55	28	2	0	69	1.02
9823079--9823140	20	3.1	20	86	4	90	27	1	0	70	0.96
9823045--9823152	49	2.1	49	80	12	121	27	4	0	67	1.10
9823082--9823151	20	3.3	21	74	20	65	25	2	0	71	1.00
9823079--9823152	12	6.5	12	71	22	54	25	2	0	71	0.99
9823414--9823455	21	1.9	21	90	9	66	11	4	16	66	1.40
9823983--9824054	6	12.7	6	88	2	89	16	4	0	79	0.89
9824072--9824288	59	3.7	59	87	6	305	42	4	12	40	1.62
9824072--9824287	116	1.8	118	90	3	348	43	3	12	40	1.60
9824072--9824288	57	3.7	58	89	4	312	42	4	12	40	1.62
9824907--9824949	20	2.2	20	91	4	70	32	4	6	55	1.47
9824915--9824957	20	2.2	20	86	0	59	37	4	9	48	1.56
9826812--9826858	25	1.9	25	86	4	69	72	4	0	23	1.02
9826822--9826857	17	2.1	17	90	10	56	72	2	0	25	0.98
9826822--9826872	15	3.2	15	83	13	50	70	5	0	23	1.09
9827209--9827252	17	2.6	16	82	10	61	22	0	9	68	1.18
9827983--9828043	16	3.8	17	74	20	51	37	0	1	60	1.07
9828071--9828112	18	2.2	20	80	16	54	52	2	0	45	1.13
9828352--9828396	21	2.1	21	84	8	56	15	4	4	75	1.12
9828612--9828682	17	4.4	16	73	19	58	71	4	2	21	1.15
9828613--9828683	25	2.9	24	79	6	79	71	4	2	21	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9828611--9828949	16	19.8	16	65	18	89	66	2	7	23	1.30
9828766--9828799	15	2.3	15	90	5	52	73	5	0	20	1.04
9828761--9828840	24	3.3	23	75	11	72	73	5	1	20	1.08
9828847--9828880	15	2.2	16	89	5	52	67	0	8	23	1.18
9828604--9828949	191	1.8	193	96	2	644	66	2	7	23	1.30
9829167--9829196	16	1.9	15	93	6	51	20	0	6	73	1.05
9833546--9833698	38	4.1	38	82	2	148	33	20	9	35	1.86
9833940--9834136	103	1.9	103	90	0	313	31	17	14	36	1.91
9835618--9835664	21	2.3	20	76	20	53	74	4	17	4	1.14
9836819--9837088	41	6.6	41	73	13	139	37	10	12	38	1.78
9836861--9837085	81	2.8	79	79	8	238	37	11	12	37	1.80
9836814--9837045	122	1.9	120	86	7	326	38	10	12	38	1.78
9836850--9837107	41	6.3	40	74	11	193	38	10	11	39	1.76
9839914--9839973	13	4.6	13	73	8	59	41	40	3	15	1.63
9839902--9839957	26	2.1	27	86	3	78	46	35	1	16	1.57
9839904--9839997	39	2.4	38	75	7	100	43	39	2	14	1.58
9840013--9840060	18	2.6	19	81	12	57	45	35	2	16	1.59
9841522--9842150	320	2.0	317	95	0	1132	41	12	14	31	1.83
9845114--9845165	20	2.6	21	76	14	56	75	0	15	9	1.05
9845851--9845886	18	1.9	19	88	5	56	41	5	8	44	1.58
9846973--9847006	14	2.4	14	95	0	59	50	8	14	26	1.72
9847122--9847195	9	8.6	9	73	19	68	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9847123--9847195	25	2.9	26	91	4	114	50	0	0	49	1.00
9847133--9847198	15	4.5	15	73	24	61	51	0	0	48	1.00
9847123--9847195	26	2.9	25	90	8	112	50	0	0	49	1.00
9847159--9847198	15	2.6	16	88	4	64	52	0	0	47	1.00
9847110--9847199	16	5.8	16	69	26	52	53	0	0	46	1.00
9847166--9847239	36	2.0	36	82	12	89	52	0	2	44	1.15
9847267--9847429	15	10.6	15	74	13	118	40	0	3	56	1.15
9847268--9847332	23	2.8	23	95	0	112	40	0	0	60	0.97
9847253--9847326	10	6.9	10	74	19	69	35	0	0	64	0.94
9847730--9847878	57	2.6	56	84	8	192	24	17	19	38	1.92
9848518--9849170	252	2.6	256	82	7	760	37	7	8	46	1.61
9848518--9849161	130	5.0	129	81	7	697	37	7	8	47	1.61
9849509--9849560	21	2.5	21	90	6	79	50	0	0	50	1.00
9849509--9849560	22	2.5	22	93	6	90	50	0	0	50	1.00
9849533--9849589	30	1.9	30	85	0	78	52	1	0	45	1.11
9852996--9853164	46	3.7	46	78	10	177	27	13	14	44	1.82
9853540--9853573	5	6.8	5	87	12	52	82	17	0	0	0.67
9857285--9857329	22	2.0	22	91	0	72	55	8	0	35	1.31
9858009--9858045	19	1.9	19	94	0	65	40	5	13	40	1.67
9859490--9859582	47	2.0	47	97	0	177	27	12	19	39	1.88
9869093--9869291	58	3.4	57	86	5	260	36	14	7	42	1.74
9871458--9871600	42	3.3	42	78	10	139	38	20	15	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9875308--9875332	2	12.5	2	100	0	50	52	0	48	0	1.00
9878571--9878679	53	2.1	50	84	5	137	23	15	20	40	1.91
9882585--9882619	17	2.1	17	88	0	52	2	11	2	82	0.88
9883480--9883525	18	2.5	19	89	10	69	34	0	0	65	0.93
9889142--9889186	20	2.2	21	88	4	65	24	2	24	48	1.62
9895484--9895694	105	2.0	105	95	0	377	34	11	19	34	1.89
9902936--9902978	14	3.1	14	86	3	52	37	16	2	44	1.60
9908103--9908206	6	17.0	6	74	4	73	31	1	7	58	1.37
9908140--9908206	25	2.7	24	83	4	71	28	2	7	61	1.38
9908171--9908209	19	2.1	18	85	4	51	28	0	7	64	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129