genome.fa.s13.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  32  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6531556--6531581	3	8.7	3	100	0	52	65	0	0	34	0.93
6531877--6531931	18	2.9	18	83	5	65	69	9	0	21	1.16
6539247--6539297	22	2.3	22	79	0	66	60	0	1	37	1.08
6539324--6539363	21	1.9	21	85	10	55	62	2	0	35	1.09
6539644--6539677	14	2.4	14	90	5	50	85	2	11	0	0.71
6541172--6541218	11	3.9	13	78	15	57	63	0	0	36	0.94
6541172--6541218	24	2.0	24	83	8	60	63	0	0	36	0.94
6541172--6541220	13	4.0	13	82	12	50	63	0	0	36	0.95
6541618--6541658	15	2.7	15	85	14	57	53	7	0	39	1.29
6542046--6542087	21	1.9	22	85	9	59	61	0	2	35	1.09
6543394--6543450	25	2.3	25	84	0	78	43	3	0	52	1.18
6544154--6544196	19	2.1	21	87	8	63	67	0	0	32	0.91
6544616--6544672	30	1.9	30	85	7	80	61	1	0	36	1.07
6544700--6544744	22	2.0	22	87	8	65	35	8	0	55	1.31
6545410--6545452	19	2.1	21	87	8	63	34	0	0	65	0.93
6545696--6545747	21	2.5	20	75	6	50	42	0	1	55	1.10
6545892--6545938	23	2.1	23	84	4	60	55	6	0	38	1.26
6546694--6546723	9	3.4	9	90	9	53	56	0	0	43	0.99
6546728--6546784	21	2.6	23	83	5	73	50	5	0	43	1.24
6546804--6547014	105	2.0	105	94	1	370	32	12	10	44	1.77
6565087--6565145	24	2.4	24	77	2	64	38	11	10	38	1.76
6565069--6565206	60	2.3	60	84	5	188	36	12	13	36	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6565522--6565674	42	3.6	42	83	1	155	22	15	22	40	1.90
6565613--6566042	75	5.6	75	76	8	400	24	12	21	41	1.87
6565613--6566040	150	2.8	152	83	6	488	24	12	21	41	1.87
6565829--6565944	42	2.7	42	80	4	126	27	11	19	41	1.86
6565754--6566060	159	1.9	160	84	4	415	25	11	20	42	1.86
6566241--6566623	50	7.8	50	80	7	417	29	9	19	40	1.84
6566243--6566624	98	3.9	98	84	2	448	29	9	19	41	1.84
6566241--6566604	148	2.5	147	82	6	434	29	10	19	40	1.85
6567683--6567728	11	4.1	11	83	11	58	34	0	0	65	0.93
6567685--6567728	21	2.0	22	91	4	72	31	0	0	68	0.90
6569380--6569404	13	1.9	13	100	0	50	44	0	0	56	0.99
6569392--6569431	20	2.0	20	85	4	55	47	5	2	45	1.38
6570697--6570728	10	3.2	10	95	0	55	87	0	12	0	0.54
6570727--6570764	6	5.6	7	90	9	53	76	0	0	23	0.79
6570727--6570761	15	2.3	15	90	9	54	77	0	0	22	0.78
6570733--6570770	16	2.3	17	86	13	53	76	2	0	21	0.91
6574124--6574161	19	2.0	19	89	0	58	68	0	5	26	1.11
6576933--6577032	48	2.2	44	83	7	119	46	8	7	39	1.61
6577964--6577998	18	1.9	18	88	0	52	14	8	2	74	1.17
6578504--6578769	65	4.1	63	68	9	160	53	11	15	20	1.72
6587446--6587493	24	2.0	24	95	0	87	52	16	2	29	1.56
6591169--6591199	16	1.9	16	93	0	53	64	6	0	29	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6594197--6594223	2	13.5	2	100	0	54	48	0	0	51	1.00
6594686--6594734	16	3.1	16	84	0	62	38	0	2	59	1.09
6595039--6595097	28	2.1	28	90	0	91	57	1	3	37	1.25
6595140--6595207	27	2.6	27	73	2	66	51	4	0	44	1.21
6596519--6596569	11	4.6	11	97	0	93	23	9	21	45	1.82
6596558--6596777	106	2.1	106	98	0	422	30	5	26	37	1.80
6604964--6604998	18	2.0	17	88	5	52	37	2	2	57	1.29
6605077--6605126	24	2.0	24	85	11	66	46	0	0	54	1.00
6607533--6607590	22	2.7	21	78	7	62	50	0	1	48	1.11
6607671--6607711	12	3.3	13	76	13	50	29	0	0	70	0.87
6607654--6607726	24	3.1	23	84	5	92	32	2	0	64	1.08
6607652--6607719	11	5.7	12	73	18	61	33	1	0	64	1.02
6608735--6608770	2	18.0	2	100	0	72	50	50	0	0	1.00
6623959--6623993	2	17.5	2	100	0	70	51	0	0	48	1.00
6624434--6624471	18	2.1	18	85	9	51	47	15	0	36	1.46
6625293--6625407	46	2.5	46	86	2	131	31	2	1	64	1.17
6625338--6625362	13	1.9	13	100	0	50	24	0	0	76	0.80
6625438--6625467	11	2.7	11	89	0	51	53	6	0	40	1.27
6630963--6631039	38	2.0	38	94	0	136	18	31	5	45	1.71
6636898--6636925	2	14.0	2	100	0	56	0	50	0	50	1.00
6637205--6637241	3	12.3	3	100	0	74	32	0	0	67	0.91
6637575--6637639	28	2.4	27	82	10	78	46	1	1	50	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6639839--6639872	5	6.6	5	90	6	50	85	0	14	0	0.60
6639838--6639872	11	3.3	11	88	8	54	85	0	14	0	0.59
6639839--6639872	16	2.2	15	89	5	50	85	0	14	0	0.60
6640174--6640203	11	2.8	11	95	5	53	83	0	16	0	0.65
6639702--6640684	332	2.9	332	98	1	1878	42	21	13	21	1.88
6640462--6640908	224	2.0	224	100	0	894	48	19	16	15	1.82
6643268--6643302	18	1.9	18	94	0	61	37	25	14	22	1.92
6643243--6643304	24	2.6	24	73	0	61	30	25	16	27	1.96
6647802--6647861	29	2.1	28	84	9	84	31	0	1	66	1.01
6647922--6647986	23	2.7	24	81	15	73	47	1	0	50	1.10
6647939--6647991	17	3.0	19	86	10	69	47	0	0	52	1.00
6648196--6648254	29	2.0	29	96	0	109	30	27	10	32	1.89
6648756--6648798	22	2.0	22	86	9	61	37	0	0	62	0.95
6652448--6652478	2	15.5	2	100	0	62	51	0	48	0	1.00
6653984--6654009	2	13.0	2	100	0	52	0	0	50	50	1.00
6654009--6654038	2	15.0	2	92	0	51	53	0	46	0	1.00
6661528--6661552	2	12.5	2	100	0	50	48	0	0	52	1.00
6667683--6667731	3	16.3	3	81	8	55	32	26	2	38	1.68
6667685--6667728	15	2.9	15	83	10	63	34	25	2	38	1.68
6675026--6675078	22	2.4	22	84	9	72	64	0	5	30	1.17
6675155--6675189	7	5.0	7	89	0	52	51	0	2	45	1.16
6675812--6675838	6	4.5	6	100	0	54	0	14	18	66	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6679779--6679881	30	3.4	30	82	6	129	37	6	19	35	1.78
6689763--6689802	2	20.0	2	84	0	53	57	0	0	42	0.98
6689763--6689802	12	3.3	12	89	0	62	57	0	0	42	0.98
6695183--6695420	120	2.0	118	89	6	365	37	8	6	47	1.60
6702084--6702149	12	5.8	12	79	13	77	48	0	0	51	1.00
6702187--6702218	11	2.8	12	95	4	57	40	0	0	59	0.97
6702254--6702296	12	3.5	12	84	6	50	34	4	0	60	1.17
6703109--6703146	11	3.5	11	82	13	51	50	0	2	47	1.15
6708480--6708521	11	3.8	11	87	12	68	69	0	0	30	0.89
6710639--6710693	20	2.5	21	85	11	67	38	0	0	61	0.96
6710712--6710754	19	2.2	20	84	12	63	67	0	0	32	0.91
6711333--6711364	2	16.5	2	93	6	57	50	0	0	50	1.00
6712122--6712158	15	2.5	14	91	8	56	56	2	0	40	1.13
6712122--6712158	7	5.0	7	90	9	56	56	2	0	40	1.13
6723861--6723891	2	15.5	2	100	0	62	51	0	48	0	1.00
6726269--6726296	2	14.0	2	100	0	56	50	0	0	50	1.00
6732352--6732400	13	4.2	13	75	24	56	53	0	0	46	1.00
6732354--6732395	20	2.0	22	90	9	70	52	0	0	47	1.00
6732414--6732464	17	3.0	17	91	5	77	62	0	0	37	0.95
6732414--6732456	19	2.2	20	88	12	72	62	0	0	37	0.95
6732420--6732479	17	3.4	18	86	6	79	58	0	1	40	1.08
6733442--6733479	20	1.9	20	89	10	60	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6736198--6736510	160	2.0	161	92	1	531	28	17	14	39	1.89
6738370--6738569	99	2.0	99	99	0	391	35	11	15	38	1.83
6740558--6740612	27	2.0	28	85	7	76	29	0	3	67	1.08
6740896--6740928	17	1.9	17	100	0	66	21	0	18	60	1.36
6743908--6743937	2	15.0	2	100	0	60	50	0	0	50	1.00
6749770--6749860	44	2.1	44	95	0	164	23	15	19	41	1.89
6765045--6765129	15	5.5	15	69	14	57	47	9	5	37	1.60
6776748--6776778	16	1.9	16	93	0	53	51	6	29	12	1.65
6778238--6778313	30	2.5	30	85	8	109	59	23	0	17	1.38
6780958--6780989	14	2.3	14	94	0	55	84	15	0	0	0.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129