genome.fa.s13.2.7.7.80.10.50.1000.60.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  60  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11655100--11655134	15	2.2	16	90	5	54	14	2	5	77	1.07
11655099--11655134	16	2.2	16	90	9	56	13	2	5	77	1.05
11655430--11655477	20	2.5	18	78	15	51	45	0	0	54	0.99
11655583--11655620	19	2.1	19	85	14	53	10	7	5	76	1.15
11656729--11656769	20	2.1	19	86	9	55	2	17	2	78	0.98
11659097--11659127	2	15.5	2	100	0	62	0	0	48	51	1.00
11662726--11662765	21	1.9	21	84	0	53	45	20	5	30	1.72
11667097--11667142	24	1.9	23	86	8	65	63	13	6	17	1.50
11667529--11667583	21	2.6	21	85	0	74	25	38	0	36	1.56
11668269--11668298	14	2.1	14	100	0	60	56	0	13	30	1.37
11671968--11672034	25	2.8	25	77	18	65	58	1	2	37	1.23
11673926--11673952	14	1.9	14	100	0	54	44	7	7	40	1.60
11673927--11673960	14	2.4	14	90	0	50	44	8	11	35	1.72
11674123--11674196	32	2.3	32	97	0	139	12	4	28	55	1.54
11676588--11677107	48	11.0	47	79	3	479	42	11	15	30	1.83
11676592--11677107	95	5.4	93	79	5	444	42	11	15	30	1.82
11676588--11677108	236	2.2	238	83	6	655	42	11	15	30	1.83
11677214--11677248	13	2.8	12	87	12	52	8	2	2	85	0.79
11678377--11678425	21	2.4	21	90	6	75	10	12	0	77	0.99
11678378--11678440	21	3.1	20	78	13	67	6	12	0	80	0.88
11678377--11678440	20	3.3	18	80	18	67	7	12	0	79	0.92
11688510--11688534	13	1.9	13	100	0	50	4	8	8	80	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11690164--11690212	10	4.9	10	87	0	71	0	8	4	87	0.65
11690163--11690214	1	52.0	1	76	0	50	0	7	3	88	0.62
11694505--11694538	12	2.8	13	91	8	54	50	26	11	11	1.73
11694529--11694556	14	2.0	14	100	0	56	50	28	7	14	1.69
11694674--11694709	18	1.9	19	94	5	65	41	19	11	27	1.85
11696469--11696573	52	2.0	52	92	0	174	49	0	18	32	1.48
11701422--11701472	21	2.5	20	81	9	57	11	13	9	64	1.49
11701852--11701917	12	5.2	13	80	12	75	19	3	9	68	1.31
11701881--11701917	13	2.8	13	91	4	56	21	5	8	64	1.40
11701864--11701915	27	1.9	27	84	7	70	17	3	9	69	1.31
11703278--11703361	18	4.6	18	75	17	59	75	1	16	7	1.09
11703317--11703364	19	2.6	18	81	12	53	75	2	18	4	1.07
11703358--11703629	142	1.9	140	85	2	348	40	12	18	29	1.87
11704377--11704446	32	2.3	29	83	11	79	31	14	10	44	1.78
11704438--11704522	29	2.8	32	80	10	97	28	22	18	30	1.97
11704770--11705015	33	7.5	33	73	7	189	34	20	13	30	1.92
11704735--11705015	66	4.3	66	75	11	254	34	19	14	31	1.92
11704735--11705009	133	2.1	133	83	4	342	34	20	14	31	1.92
11704923--11705058	32	4.1	32	79	7	130	36	19	14	28	1.92
11704770--11705105	66	5.1	66	76	12	248	35	20	13	30	1.92
11705273--11705336	22	2.9	22	78	17	62	37	17	18	26	1.93
11705445--11705501	12	4.3	13	82	13	64	80	10	1	7	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11705458--11705501	14	3.1	14	93	3	70	79	11	2	6	1.01
11705875--11705934	12	5.3	11	81	16	70	71	1	0	26	0.95
11705875--11705942	12	6.3	10	72	24	50	72	1	0	26	0.94
11705891--11705942	15	3.6	14	76	19	54	71	1	0	26	0.97
11705876--11705938	21	3.2	20	78	13	67	71	1	0	26	0.95
11710949--11710981	15	2.1	16	88	5	50	63	6	6	24	1.40
11718011--11718304	62	4.8	61	75	12	253	41	10	11	36	1.76
11718023--11718342	62	5.2	61	74	11	151	39	11	11	37	1.79
11722033--11722086	25	2.2	26	77	16	60	38	11	3	46	1.57
11726260--11726397	62	2.2	63	81	1	161	36	10	14	38	1.81
11726481--11726808	63	5.2	63	72	6	218	39	11	10	38	1.77
11726476--11726837	126	2.9	125	80	6	385	38	11	11	38	1.77
11732497--11732536	19	2.0	21	85	9	57	25	25	12	37	1.91
11735242--11735310	3	23.3	3	97	2	131	31	0	0	68	0.90
11736186--11736245	19	3.2	19	76	4	59	48	40	0	11	1.40
11736307--11736366	18	3.4	18	68	13	52	21	13	11	53	1.71
11737207--11737250	19	2.3	19	88	7	63	72	9	0	18	1.10
11740612--11740645	13	2.6	13	95	0	59	38	35	2	23	1.70
11742033--11742186	71	2.1	73	93	2	267	14	16	11	57	1.66
11747893--11747932	21	2.0	21	90	5	64	45	10	12	32	1.75
11750483--11750576	22	4.0	25	68	17	76	77	1	15	5	1.00
11750471--11750580	44	2.5	45	82	12	122	75	0	17	6	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11750502--11750575	19	3.7	20	80	5	78	78	1	16	4	0.97
11750491--11750581	6	14.7	6	71	14	51	76	1	17	4	1.00
11751993--11752037	19	2.4	19	100	0	90	37	15	13	33	1.86
11753141--11753261	45	2.6	45	87	7	156	31	12	9	46	1.74
11762148--11762189	14	2.9	14	82	10	50	21	4	7	66	1.35
11765572--11765608	2	18.5	2	100	0	74	51	0	0	48	1.00
11766795--11766949	64	2.5	61	76	5	150	39	15	15	29	1.88
11766835--11766976	64	2.2	63	80	7	153	36	13	18	31	1.89
11771149--11771302	80	1.9	79	86	1	218	43	22	9	25	1.82
11777649--11777679	11	2.8	11	100	0	62	32	0	9	58	1.31
11782039--11782086	21	2.3	21	75	7	53	56	0	0	43	0.99
11782952--11782992	2	20.5	2	100	0	82	48	0	0	51	1.00
11784153--11784275	32	3.9	31	76	7	104	39	2	7	50	1.43
11784267--11784315	20	2.5	20	86	0	62	40	2	2	55	1.23
11784378--11784421	22	2.0	23	86	4	63	45	2	2	50	1.27
11786417--11786446	15	1.9	16	93	6	53	73	3	0	23	0.98
11787842--11787921	33	2.4	33	79	6	90	47	10	5	37	1.59
11788026--11788072	14	3.3	14	77	14	51	57	4	2	36	1.30
11788582--11788611	2	15.0	2	92	0	51	53	0	0	46	1.00
11793933--11793968	2	18.0	2	100	0	72	50	0	0	50	1.00
11794906--11794930	12	2.1	12	100	0	50	56	0	0	44	0.99
11795167--11795194	13	2.2	13	100	0	56	14	0	0	85	0.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11795994--11796043	18	2.8	19	73	11	52	54	2	0	44	1.11
11796159--11796199	13	3.2	13	82	0	55	60	0	0	39	0.96
11796247--11796308	32	1.9	31	81	12	72	48	8	3	40	1.49
11798166--11798206	20	2.0	20	90	0	64	58	19	4	17	1.56
11801832--11801930	48	2.1	48	96	3	182	49	10	20	20	1.77
11804959--11804999	2	20.5	2	100	0	82	51	0	48	0	1.00
11805713--11805749	15	2.4	15	90	4	56	45	0	0	54	1.00
11806977--11807014	20	1.9	20	84	10	51	44	2	0	52	1.14
11808196--11808280	19	4.4	18	76	16	64	54	2	4	38	1.34
11808197--11808280	18	4.5	17	75	17	60	54	2	4	38	1.34
11808181--11808276	21	4.9	21	77	7	78	54	3	4	38	1.36
11808325--11808468	67	2.2	64	75	14	141	62	2	1	33	1.18
11808353--11808397	17	2.6	17	86	10	56	64	4	0	31	1.13
11808450--11808495	21	2.2	21	84	0	56	32	8	2	56	1.42
11808660--11808749	9	9.3	9	73	13	63	33	3	5	57	1.38
11808659--11808741	19	4.2	19	77	14	80	31	3	4	60	1.35
11808658--11808741	20	4.2	19	78	15	82	30	3	4	60	1.34
11808686--11808749	30	2.2	30	80	2	67	34	1	7	56	1.38
11808772--11808811	19	2.1	19	90	0	62	32	0	10	57	1.32
11810230--11810309	12	6.8	12	69	18	53	2	32	0	65	1.06
11815670--11815701	11	2.9	11	95	0	55	21	0	25	53	1.46
11815725--11815881	52	3.0	52	84	1	190	39	8	24	26	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11816422--11816480	25	2.4	25	80	5	66	33	6	32	27	1.83
11816751--11816782	11	2.9	11	95	0	55	21	0	25	53	1.46
11816808--11816963	52	3.0	52	81	7	174	40	8	20	30	1.82
11817596--11817636	4	10.5	4	80	15	50	2	26	0	70	0.99
11818530--11818573	15	2.8	16	83	13	56	43	6	0	50	1.29
11818613--11818843	58	4.0	57	85	5	295	39	10	3	46	1.55
11818634--11818843	116	1.8	117	93	1	368	40	10	2	46	1.54
11820196--11820236	18	2.3	18	88	12	59	70	9	0	19	1.14
11820205--11820269	13	5.0	13	79	5	69	80	4	0	15	0.88
11820228--11820269	6	6.8	6	84	15	59	85	0	0	14	0.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129