genome.fa.s13.2.7.7.80.10.50.1000.67.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  67  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12792036--12792082	21	2.2	21	81	7	60	21	2	0	76	0.89
12793127--12793245	38	3.0	41	83	8	154	46	20	12	21	1.83
12793713--12793795	22	3.8	22	78	7	89	38	21	6	33	1.78
12793720--12793979	46	5.7	46	83	2	256	35	15	8	41	1.76
12793713--12793979	21	11.8	22	69	13	130	35	15	8	40	1.77
12793767--12793979	46	4.6	46	86	2	266	34	13	8	43	1.76
12795202--12795281	8	10.0	8	77	11	76	3	13	0	82	0.80
12795205--12795296	15	5.7	17	70	17	54	5	14	0	80	0.88
12795206--12795249	23	1.9	23	90	0	70	6	13	0	79	0.92
12795205--12795280	9	8.6	9	74	8	66	3	13	0	82	0.79
12795222--12795304	8	10.6	8	76	14	50	6	13	1	79	0.97
12795222--12795288	9	7.3	9	82	11	57	4	13	0	82	0.82
12795205--12795288	10	8.1	10	74	15	73	4	13	0	82	0.83
12800556--12800588	11	3.1	11	91	8	59	18	0	0	81	0.68
12802878--12802915	19	2.0	19	85	10	51	31	2	0	65	1.06
12806568--12806630	27	2.4	27	84	5	76	73	0	1	25	0.93
12806566--12806622	26	2.2	26	78	12	64	73	0	1	24	0.92
12812271--12812378	24	4.6	24	67	22	61	71	5	2	20	1.19
12812292--12812349	17	3.3	17	79	13	64	72	5	5	17	1.22
12812290--12812383	24	3.9	24	72	12	70	74	5	4	15	1.16
12813183--12813311	3	45.3	3	69	18	71	58	5	3	32	1.36
12813184--12813292	20	5.6	19	71	21	82	55	5	3	34	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12813238--12813289	22	2.4	21	90	6	77	55	3	3	36	1.36
12813660--12813918	119	2.2	118	80	2	277	42	11	23	23	1.86
12815436--12815468	14	2.4	14	90	10	50	3	6	3	87	0.71
12818454--12818505	4	13.2	4	76	11	54	71	1	3	23	1.13
12818883--12818937	27	2.0	27	93	6	94	32	9	12	45	1.74
12819228--12819277	19	2.7	18	72	22	50	36	0	8	56	1.29
12819756--12819794	20	2.0	20	100	0	78	46	5	2	46	1.38
12820245--12820394	3	52.3	3	71	16	86	59	6	3	31	1.38
12825628--12825667	8	4.7	9	90	9	66	22	0	0	77	0.77
12825628--12825667	17	2.4	17	91	8	64	22	0	0	77	0.77
12825883--12825940	21	2.7	21	84	15	75	75	6	0	17	1.01
12825891--12825931	20	2.1	20	90	4	66	75	4	0	19	0.98
12833681--12834381	232	3.0	232	95	0	1226	31	19	20	28	1.97
12835113--12835184	7	10.0	7	69	21	51	45	0	0	54	0.99
12835116--12835180	34	1.9	33	84	9	87	46	0	0	53	1.00
12835161--12835215	27	2.0	27	82	6	67	49	0	0	50	1.00
12835210--12835252	17	2.5	16	82	14	50	60	2	0	37	1.10
12835216--12835275	22	2.9	20	81	13	68	53	1	0	45	1.10
12835221--12835278	21	2.7	22	86	2	82	50	1	0	48	1.11
12835784--12835817	5	7.0	5	86	6	52	38	2	0	58	1.13
12835989--12836054	20	3.4	19	72	12	62	45	1	0	53	1.09
12836033--12836080	10	4.2	12	73	24	50	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12836114--12836160	6	7.5	6	92	7	76	31	0	0	68	0.90
12844087--12844171	44	1.9	44	100	0	170	35	10	21	32	1.88
12845999--12846041	17	2.9	14	81	18	59	48	6	11	32	1.66
12846003--12846036	17	2.0	17	100	0	68	47	5	11	35	1.65
12851909--12851959	18	2.8	18	84	3	57	84	3	9	1	0.83
12851909--12851968	22	2.6	22	81	5	57	83	3	11	1	0.84
12851923--12851970	9	5.1	9	85	9	60	85	2	12	0	0.69
12851923--12851977	10	5.5	10	82	18	53	83	1	12	1	0.80
12853194--12853246	27	2.0	27	88	0	79	32	18	7	41	1.79
12853495--12853536	22	1.9	22	85	0	57	35	19	16	28	1.93
12855887--12855993	3	38.3	3	68	20	54	29	2	4	62	1.29
12855885--12855971	32	2.6	33	78	14	90	33	3	5	57	1.39
12855963--12855995	5	6.4	5	96	3	57	21	0	0	78	0.75
12856786--12856836	22	2.4	21	81	12	59	17	1	3	76	1.03
12857713--12857764	4	13.0	4	78	15	54	25	3	1	69	1.16
12857713--12857763	25	2.0	25	81	7	59	25	3	1	68	1.17
12865929--12866060	59	2.2	60	84	6	171	59	9	18	12	1.59
12866801--12867170	116	3.2	116	77	6	356	22	24	14	37	1.93
12867489--12867548	3	21.7	3	80	19	69	30	0	0	70	0.88
12867493--12867532	14	2.6	16	81	18	57	35	0	0	65	0.93
12867490--12867548	17	3.6	16	84	10	75	30	0	0	69	0.89
12867489--12867548	23	2.7	23	87	10	72	30	0	0	70	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12868089--12868129	19	2.1	20	90	4	66	39	9	19	31	1.84
12868343--12868383	19	2.2	18	91	4	64	14	7	2	75	1.12
12868350--12868386	10	3.8	10	82	17	51	18	8	2	70	1.25
12868350--12868391	18	2.3	19	83	4	50	16	7	4	71	1.26
12868363--12868428	25	2.6	24	75	17	71	18	4	3	74	1.12
12868397--12868443	21	2.1	24	88	11	73	19	4	2	74	1.09
12871170--12871215	19	2.4	19	92	0	74	19	21	15	43	1.87
12872902--12872939	19	2.0	19	100	0	76	10	10	31	47	1.72
12886390--12886453	22	2.7	22	74	21	58	75	1	6	17	1.09
12886401--12886477	26	3.0	27	83	5	79	72	2	6	18	1.17
12886408--12886485	11	6.7	11	71	19	52	73	2	6	17	1.17
12886446--12886472	14	1.9	14	100	0	54	74	7	3	14	1.18
12886445--12886497	25	2.1	25	82	6	63	73	7	7	11	1.24
12887711--12887769	18	3.4	18	74	9	68	11	0	35	52	1.38
12887756--12887820	20	3.2	20	77	12	71	13	0	41	44	1.44
12887750--12887821	13	5.5	13	76	18	69	12	0	41	45	1.42
12887756--12887820	7	9.7	7	72	21	59	13	0	41	44	1.44
12889297--12889636	141	2.4	141	77	10	361	42	13	11	32	1.79
12893471--12893497	3	9.0	3	100	0	54	66	0	0	33	0.92
12896850--12896940	40	2.3	40	82	0	110	43	14	14	27	1.84
12896864--12897054	106	1.8	106	82	3	251	43	18	9	27	1.81
12896946--12897063	41	2.9	40	88	3	173	47	20	6	25	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12898382--12898411	15	1.9	16	93	6	53	3	16	0	80	0.85
12898381--12898418	20	1.9	20	89	10	60	5	13	0	81	0.85
12898380--12898421	22	1.9	22	85	9	59	7	11	0	80	0.88
12902961--12903025	20	3.2	20	78	16	55	23	3	3	70	1.15
12904491--12904611	61	2.0	61	88	0	179	49	12	10	27	1.73
12905015--12905086	13	5.5	13	72	20	53	65	6	1	26	1.26
12909906--12910304	146	2.8	142	82	6	455	33	14	11	41	1.81
12912178--12912220	2	21.5	2	80	0	50	44	2	4	48	1.36
12913890--12913961	3	24.0	3	82	0	72	62	6	4	26	1.39
12913890--12913958	15	4.6	15	83	0	84	62	7	4	26	1.40
12914035--12914074	3	13.3	3	100	0	80	32	0	0	67	0.91
12924209--12924253	23	2.0	23	86	8	65	80	6	2	11	0.99
12924631--12924760	63	2.1	63	92	0	215	37	7	14	40	1.75
12925310--12925342	11	2.7	13	86	13	52	48	9	6	36	1.60
12925266--12925385	53	2.3	51	84	12	147	40	15	13	31	1.85
12926097--12926506	145	2.8	145	80	6	442	32	14	11	41	1.81
12928386--12928428	3	14.3	3	100	0	86	67	0	0	32	0.91
12931210--12931263	21	2.5	22	82	8	58	77	1	12	7	1.05
12931210--12931258	22	2.2	23	85	3	64	77	2	12	8	1.07
12932262--12932295	7	5.1	7	86	13	54	44	41	0	14	1.45
12932247--12932294	12	3.8	12	77	20	53	45	37	2	14	1.57
12932264--12932315	19	2.7	19	88	8	70	42	40	1	15	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12939571--12939607	3	12.3	3	88	0	56	29	0	5	64	1.15
12943113--12943157	2	22.5	2	95	0	81	51	2	0	46	1.13
12943119--12943168	14	3.6	14	88	0	55	46	6	2	46	1.39
12943368--12943396	2	14.5	2	100	0	58	51	0	0	48	1.00
12950938--12951003	30	2.1	32	86	10	93	19	13	6	60	1.54
12951351--12951376	2	13.0	2	100	0	52	50	0	0	50	1.00
12952899--12952923	13	1.9	13	100	0	50	64	4	16	16	1.44
12952969--12953013	15	3.1	14	81	12	56	68	2	8	20	1.27
12952966--12953013	24	2.0	24	91	0	78	66	2	10	20	1.32
12953054--12953103	22	2.2	23	82	3	66	76	4	6	14	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129