genome.fa.s13.2.7.7.80.10.50.1000.29.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  29  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5979505--5979705	105	1.9	102	82	10	248	48	2	10	38	1.53
5979712--5979744	15	2.3	15	94	5	59	60	9	0	30	1.27
5979760--5979903	59	2.4	60	82	5	175	47	6	10	36	1.63
5983750--5983844	9	9.5	10	70	15	63	84	0	9	6	0.78
5983741--5983844	20	5.1	22	75	17	91	82	0	10	6	0.83
5983750--5983844	1	95.0	1	72	0	55	84	0	9	6	0.78
5985029--5985651	21	26.5	25	69	14	299	38	9	13	37	1.78
5985003--5985307	46	6.5	46	80	5	306	37	9	13	39	1.78
5985119--5985260	26	5.7	26	78	9	127	38	9	12	39	1.77
5985029--5985611	92	6.2	95	79	11	405	38	9	13	38	1.78
5985290--5985672	46	8.3	46	79	6	382	38	10	12	38	1.78
5985290--5985672	92	4.2	92	83	6	425	38	10	12	38	1.78
5985638--5985687	21	2.4	21	89	0	73	38	6	12	44	1.66
5985638--5985700	21	3.0	21	85	0	63	38	4	15	41	1.69
5985823--5986202	114	3.3	114	89	0	562	36	14	14	34	1.87
5986464--5986600	43	3.2	43	81	3	159	26	10	18	44	1.82
5986520--5986613	43	2.2	43	84	1	116	23	9	18	48	1.77
5986741--5986784	8	5.2	8	81	10	52	77	2	2	18	0.98
5986741--5986785	9	5.2	9	82	12	51	77	2	2	17	0.97
5986745--5986786	18	2.3	18	83	0	57	80	2	2	14	0.90
5987651--5987696	23	2.0	22	83	4	56	23	4	0	71	1.03
5987706--5987817	57	1.9	56	84	12	138	51	5	8	34	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5987720--5987832	57	2.0	57	83	10	142	52	4	7	35	1.51
5987720--5987934	106	2.0	103	81	11	240	49	4	11	35	1.58
5987926--5987959	15	2.3	15	90	5	52	61	2	0	35	1.11
5987835--5988141	125	2.3	129	83	9	367	47	4	11	36	1.60
5987954--5988083	62	2.1	62	83	8	167	50	4	9	36	1.55
5988071--5988209	60	2.3	59	82	6	181	51	6	8	33	1.58
5994856--5995084	124	1.9	120	84	5	307	45	3	14	36	1.60
5995531--5995738	115	1.8	116	80	8	255	48	7	6	37	1.57
5997013--5997040	1	28.0	1	100	0	56	100	0	0	0	0.00
6001878--6001938	29	2.1	28	84	3	77	44	1	0	54	1.10
6002285--6002349	28	2.3	28	94	0	112	33	9	6	50	1.59
6003052--6003078	2	13.5	2	100	0	54	0	48	0	51	1.00
6003852--6003878	4	6.8	4	100	0	54	22	0	0	77	0.76
6004620--6004653	17	2.0	17	88	11	52	29	11	17	41	1.85
6015638--6015683	22	2.1	22	100	0	92	52	17	4	26	1.63
6016814--6016843	15	2.0	15	93	0	51	13	13	23	50	1.77
6020151--6020200	25	2.0	25	96	0	91	46	18	12	24	1.82
6023167--6023199	12	2.5	14	85	14	52	60	3	0	36	1.12
6024991--6025030	18	2.2	18	86	4	53	70	10	10	10	1.36
6027741--6027816	32	2.5	31	74	21	79	43	3	7	44	1.51
6027803--6027877	15	4.9	15	73	17	66	53	1	1	44	1.17
6027811--6027899	24	3.6	24	72	17	76	56	1	1	41	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6033709--6033751	17	2.5	17	85	14	54	27	2	4	65	1.25
6035531--6035601	21	3.3	21	82	9	81	53	0	0	46	1.00
6035571--6035611	16	2.6	16	96	0	73	65	0	0	34	0.93
6037306--6037445	59	2.4	58	83	8	176	20	2	20	56	1.55
6037389--6037462	33	2.2	33	83	11	87	21	1	17	59	1.45
6037543--6037583	21	1.9	22	85	5	57	19	0	17	63	1.31
6043362--6043396	18	1.9	18	88	0	52	37	25	14	22	1.92
6047064--6047109	21	2.2	21	92	3	76	34	0	0	65	0.93
6047146--6047184	13	3.1	13	81	3	53	56	0	0	43	0.99
6047419--6047485	3	22.3	3	96	0	125	64	1	0	34	1.03
6047700--6047745	24	1.9	24	82	8	58	36	34	8	19	1.83
6048976--6049097	33	3.8	32	78	7	120	46	31	0	21	1.57
6048985--6049075	16	5.6	16	71	14	71	48	27	1	23	1.58
6048976--6049075	32	3.1	33	85	5	107	48	29	1	22	1.57
6048975--6049077	16	6.3	16	67	19	61	48	29	0	21	1.57
6049074--6049161	45	1.9	46	81	6	108	45	31	0	22	1.53
6049125--6049188	15	4.5	14	80	11	53	50	31	0	18	1.48
6049114--6049225	51	2.2	51	82	7	129	50	31	0	18	1.48
6049164--6049225	14	4.2	14	80	10	61	53	29	0	17	1.44
6049168--6049211	22	2.0	23	86	4	63	47	31	0	20	1.50
6049184--6049214	16	1.9	16	93	0	53	45	29	0	25	1.54
6051500--6051525	13	2.0	13	100	0	52	76	0	7	15	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6056307--6056475	89	1.9	92	87	5	254	15	15	24	43	1.86
6064026--6064054	15	1.9	15	100	0	58	0	31	0	68	0.89
6066883--6066912	15	2.0	15	93	0	51	26	0	3	70	1.03
6067638--6067699	23	2.7	23	82	9	74	58	0	0	41	0.98
6067649--6067699	25	2.1	23	82	17	59	58	0	0	41	0.98
6067639--6067700	25	2.8	22	70	25	58	56	0	0	43	0.99
6076704--6076768	31	2.1	31	100	0	130	47	3	3	46	1.33
6077134--6077223	44	2.0	44	97	0	171	26	33	8	31	1.87
6077932--6077957	2	13.0	2	100	0	52	0	50	0	50	1.00
6078267--6078306	13	3.0	13	81	3	53	52	0	0	47	1.00
6078431--6078485	16	3.6	14	79	13	56	67	0	0	32	0.91
6080060--6080088	9	3.3	9	90	9	51	20	0	0	79	0.74
6080996--6081078	9	9.2	9	73	5	51	42	2	21	33	1.66
6080996--6081081	15	5.9	15	76	11	81	43	2	20	33	1.65
6080996--6081069	21	3.5	21	75	10	71	40	2	21	35	1.68
6084137--6084234	49	2.0	49	82	4	117	28	9	23	38	1.85
6087117--6087156	20	2.0	20	85	9	55	5	15	7	72	1.24
6087497--6087910	145	2.9	145	77	7	369	42	10	12	34	1.77
6089887--6089923	12	3.2	12	81	14	51	48	0	0	51	1.00
6089885--6089919	18	1.9	18	88	0	52	54	0	0	45	0.99
6089935--6089983	23	2.1	23	85	7	64	59	6	0	34	1.22
6090742--6090771	6	4.8	6	92	8	51	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6091830--6091863	17	2.0	17	94	0	59	41	2	0	55	1.15
6091848--6091947	30	3.3	31	78	10	100	45	1	3	51	1.23
6091951--6091975	9	2.8	9	100	0	50	8	0	0	92	0.40
6094331--6094363	16	2.1	16	94	0	57	51	0	0	48	1.00
6097205--6097269	32	2.0	33	90	3	105	63	10	4	21	1.45
6106959--6106990	2	16.0	2	93	0	55	46	0	3	50	1.17
6107418--6107510	44	2.1	45	84	11	122	41	0	1	56	1.06
6107473--6107531	29	2.1	28	84	9	75	47	0	0	52	1.00
6110850--6110886	2	19.0	2	88	5	58	48	0	0	51	1.00
6111410--6111436	2	13.5	2	100	0	54	48	0	0	51	1.00
6116936--6117006	14	5.2	14	70	11	58	74	1	14	9	1.13
6117639--6117712	19	3.8	19	72	12	69	62	0	5	32	1.18
6117656--6117731	18	4.0	18	73	11	53	65	0	7	26	1.19
6117932--6117972	21	2.0	21	85	0	55	82	4	7	4	0.93
6119284--6119563	139	2.0	137	93	2	472	57	8	7	26	1.57
6123581--6123606	2	13.0	2	100	0	52	50	0	0	50	1.00
6131309--6131343	2	17.5	2	100	0	70	48	0	0	51	1.00
6135276--6135321	4	11.5	4	90	0	74	30	0	19	50	1.48
6137172--6137198	1	27.0	1	100	0	54	100	0	0	0	0.00
6141252--6141277	2	13.0	2	100	0	52	50	0	0	50	1.00
6143374--6143435	31	2.0	31	84	6	81	43	0	3	53	1.17
6152502--6152538	2	18.5	2	100	0	74	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6159526--6159577	24	2.2	24	89	0	77	50	13	9	26	1.72
6159533--6159582	24	2.1	24	100	0	100	48	16	8	28	1.74
6159894--6159953	19	3.1	20	73	7	61	68	18	1	11	1.28
6160086--6160153	33	2.0	34	83	13	88	69	13	8	8	1.37
6160765--6160812	3	16.0	3	100	0	96	33	0	0	66	0.92
6160994--6161035	18	2.3	18	88	8	59	9	2	7	80	0.97
6161003--6161042	18	2.2	18	86	4	53	10	2	10	77	1.08
6161053--6161102	24	2.2	24	79	13	61	66	2	0	32	1.03
6163206--6163231	10	2.6	10	100	0	52	46	0	0	53	1.00
6163522--6163557	19	1.9	19	88	5	56	80	8	0	11	0.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129