genome.fa.s13.2.7.7.80.10.50.1000.93.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23775123

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  93  of  129  ( 15449 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16609287--16609326	21	2.0	20	85	5	53	45	7	0	47	1.31
16610451--16610490	12	3.1	12	86	13	53	50	0	0	50	1.00
16613595--16613635	9	4.2	10	79	14	50	68	0	0	31	0.90
16613594--16613631	20	1.9	20	89	10	60	63	0	0	36	0.95
16622885--16622924	14	3.1	14	75	17	50	55	2	5	37	1.35
16622922--16622965	17	2.5	18	85	3	54	63	9	2	25	1.35
16623834--16623900	19	3.3	20	82	12	75	62	1	4	31	1.24
16623848--16623897	16	3.1	16	88	2	73	60	0	6	34	1.21
16623834--16623900	3	23.3	3	75	14	61	62	1	4	31	1.24
16624198--16624321	56	2.2	55	81	1	140	32	14	29	24	1.94
16624338--16624403	31	2.1	31	86	5	89	39	10	25	24	1.87
16624535--16624667	57	2.3	57	84	0	185	36	16	24	21	1.94
16630657--16630733	38	2.0	38	94	0	136	33	31	7	27	1.85
16630758--16630810	23	2.2	25	83	6	65	49	18	11	20	1.78
16634091--16634133	20	2.1	20	87	12	61	32	18	0	48	1.48
16643659--16643719	24	2.6	23	84	7	77	72	8	4	14	1.26
16643651--16643742	30	3.0	30	75	13	89	73	7	3	15	1.18
16643707--16643738	14	2.3	14	100	0	64	75	6	0	18	1.01
16643936--16644180	121	2.0	121	94	0	427	41	20	9	28	1.84
16644636--16644713	3	26.3	3	84	2	86	58	0	8	32	1.29
16644732--16644813	42	1.9	44	83	14	109	54	8	2	34	1.44
16645084--16645150	29	2.2	32	82	12	88	50	0	1	47	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16645243--16645298	12	4.2	12	79	18	58	44	0	0	55	0.99
16645205--16645296	29	3.4	28	78	12	102	46	2	0	51	1.13
16657809--16657851	22	2.0	22	85	0	59	46	9	6	37	1.63
16661458--16661493	18	1.9	19	94	5	65	5	19	27	47	1.72
16661852--16662060	50	4.3	48	78	17	225	38	15	14	31	1.88
16661927--16662061	52	2.9	43	75	19	137	40	17	13	28	1.88
16661877--16662061	95	2.0	93	88	6	275	40	16	14	29	1.88
16663012--16663061	9	5.4	9	80	4	55	4	10	2	84	0.84
16663010--16663064	18	3.0	18	91	2	83	3	9	1	85	0.79
16667238--16667400	81	2.0	81	97	0	308	30	21	16	31	1.95
16673854--16673880	3	9.0	3	100	0	54	33	0	0	66	0.92
16677605--16677789	48	3.7	51	78	7	191	35	12	14	37	1.84
16677604--16677789	98	1.9	102	84	5	254	36	12	13	37	1.84
16678707--16678784	10	7.5	10	79	12	77	7	11	1	79	0.99
16678699--16678776	21	3.6	22	89	3	106	8	14	0	76	1.00
16678699--16678776	11	7.1	11	78	10	88	8	14	0	76	1.00
16689479--16689530	3	17.3	3	100	0	104	32	0	0	67	0.91
16697947--16697985	19	2.0	20	85	5	53	35	10	0	53	1.35
16707485--16707516	3	10.7	3	100	0	64	68	0	0	31	0.90
16709167--16709214	25	1.9	25	83	8	62	25	6	10	58	1.54
16710969--16711220	123	2.0	123	85	7	343	42	14	7	35	1.73
16714998--16715031	17	2.1	16	88	5	50	26	20	14	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16715560--16715609	19	2.7	18	81	9	64	28	20	12	40	1.87
16715579--16715952	98	3.8	98	75	8	291	35	13	14	36	1.85
16715748--16715791	19	2.3	19	88	7	63	20	20	18	40	1.91
16715763--16715801	19	2.1	19	90	0	60	20	23	15	41	1.90
16715532--16715981	195	2.3	196	79	5	457	34	14	13	37	1.85
16715871--16716180	79	3.9	78	75	7	279	34	12	12	39	1.82
16716324--16716420	47	2.1	47	84	7	126	32	9	14	43	1.77
16717221--16717329	48	2.3	47	83	9	132	27	11	21	39	1.88
16717249--16717350	47	2.1	47	79	10	109	29	11	19	39	1.87
16717417--16717704	85	3.4	82	74	13	235	31	12	23	32	1.92
16717557--16717736	85	2.1	85	80	6	195	28	13	25	32	1.94
16720070--16720117	25	1.9	25	91	0	78	22	18	14	43	1.87
16727262--16727299	19	2.1	19	90	5	60	81	2	2	13	0.90
16728176--16728230	24	2.2	24	83	6	65	38	7	12	41	1.71
16733086--16733128	16	2.9	16	86	10	56	34	37	0	27	1.57
16734644--16734711	20	3.7	18	78	20	77	80	0	13	5	0.87
16734645--16734736	7	13.1	7	81	13	82	79	0	11	8	0.94
16734655--16734734	15	5.5	14	77	12	63	80	0	11	8	0.92
16734655--16734733	22	3.6	22	75	11	81	81	0	11	7	0.89
16736094--16736475	43	8.7	43	81	6	338	25	12	16	45	1.83
16736116--16736475	89	4.1	86	80	7	325	25	12	16	45	1.83
16736646--16736682	17	2.1	18	95	5	67	78	0	2	18	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16742353--16742404	2	26.0	2	100	0	104	50	0	50	0	1.00
16748779--16748803	2	12.5	2	100	0	50	52	0	0	48	1.00
16752296--16752425	45	2.9	45	75	4	129	35	28	19	16	1.94
16758931--16759031	50	2.0	50	96	0	184	31	6	18	42	1.77
16762817--16762860	16	2.7	17	75	10	56	47	22	6	22	1.75
16762458--16763749	710	1.8	711	88	2	1970	43	11	7	36	1.70
16763548--16763617	16	4.4	16	78	3	52	47	14	8	30	1.74
16763548--16763618	32	2.2	32	84	0	88	47	14	8	29	1.73
16767038--16767287	66	3.8	66	70	10	168	45	7	16	30	1.75
16767200--16767449	33	7.6	33	70	8	114	44	8	20	26	1.79
16767134--16767449	99	3.2	98	72	11	243	45	7	18	28	1.77
16767236--16767751	66	7.8	66	71	7	235	45	9	17	27	1.79
16767257--16767581	132	2.5	131	80	2	330	45	10	17	26	1.80
16767339--16767581	131	1.8	132	82	2	310	47	10	16	26	1.78
16767504--16767781	33	8.5	33	73	3	152	45	8	18	27	1.78
16767561--16767743	99	1.8	99	80	4	217	47	7	16	28	1.73
16767668--16767806	65	2.1	66	84	4	174	46	7	20	25	1.77
16768507--16768571	25	2.6	25	90	0	94	24	15	29	30	1.96
16768528--16768579	25	2.1	25	88	0	77	28	15	28	26	1.96
16771604--16771656	28	2.0	27	85	7	72	30	13	11	45	1.78
16775048--16775516	156	3.0	156	92	0	744	37	11	15	35	1.84
16775885--16775916	16	2.0	16	93	0	55	12	0	9	78	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16778091--16778132	20	2.1	20	86	0	57	33	11	16	38	1.86
16780943--16780993	23	2.2	22	80	16	59	31	3	3	60	1.33
16781024--16781110	21	4.4	19	76	11	77	39	5	9	45	1.60
16784855--16784900	11	3.9	11	85	8	56	84	2	10	2	0.79
16784836--16784911	27	2.8	26	84	11	91	78	1	15	3	0.96
16784853--16784904	14	3.8	13	84	5	68	84	1	11	1	0.78
16784853--16784901	13	3.8	12	82	17	62	85	2	10	2	0.76
16784879--16784912	17	2.0	17	88	0	50	82	0	8	8	0.85
16786758--16786959	84	2.4	84	79	3	201	24	9	19	47	1.79
16787036--16787168	69	1.9	69	81	3	160	25	18	15	40	1.90
16787480--16787628	44	3.4	44	75	5	140	34	24	11	29	1.91
16787512--16787618	22	4.9	22	72	0	70	34	25	12	28	1.91
16787555--16787630	22	3.5	22	73	10	75	39	26	7	26	1.83
16787458--16787672	88	2.4	88	75	10	213	33	22	14	30	1.94
16787656--16787706	22	2.3	22	89	0	75	29	21	17	31	1.96
16792072--16792163	47	1.9	48	80	6	107	36	10	23	28	1.89
16793288--16793334	24	1.9	25	82	4	60	21	19	14	44	1.86
16794777--16794823	18	2.7	17	80	12	51	78	4	12	4	1.04
16795882--16795945	24	2.7	23	83	9	74	18	7	3	70	1.25
16798893--16798933	15	2.7	15	80	0	55	78	0	7	14	0.96
16800809--16800841	16	2.0	17	88	5	50	42	3	36	18	1.66
16804453--16804500	21	2.4	19	83	10	60	50	12	2	35	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16804449--16804507	30	1.9	30	86	3	82	47	13	5	33	1.65
16806778--16807143	188	1.9	188	94	0	642	30	15	15	38	1.88
16807661--16807719	25	2.4	25	97	0	109	59	11	15	13	1.62
16816297--16816526	121	1.9	121	88	0	343	51	11	6	31	1.62
16816295--16816526	80	2.9	82	86	2	342	51	11	6	31	1.62
16816297--16816526	20	11.4	20	70	14	143	51	11	6	31	1.62
16816297--16816526	41	5.7	41	85	2	320	51	11	6	31	1.62
16816536--16816609	20	3.7	20	83	0	85	52	8	8	31	1.60
16816633--16816678	16	2.9	16	80	0	56	56	8	4	30	1.49
16816616--16816678	32	1.9	33	87	3	92	55	9	3	31	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129